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TREX

Transcript Explorer
for L. japonicus reference genomes

The Transcript Explorer tool can be used to search for candidate Lotus genes using user-defined keywords, or to comb a specific genomic interval—a combination of chromosome and position range—for genes/transcripts of interest.

Repeat Search

  • IPR007603
Separate each keyword, or gene/transcript ID, with a comma or tab. Spaces are not accepted as delimiters due to their potential use in boolean searches.
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We have found 24 results. Now displaying 1 of 1 with 50 rows per page. This search has taken 6.163s to perform.

Transcript Name Description Chr Start End Strand Domain predictions GO predictions
Lj0g3v0175929.1
n.a. PREDICTED: choline transporter-like protein 5-A-like [Glycine max] gi|356544028|ref|XP_003540458.1| chr0 84971311 84972891 -
2 domain predictions
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Lj0g3v0285829.1
n.a. PREDICTED: choline transporter-like protein 5-A-like [Glycine max] gi|356544028|ref|XP_003540458.1| chr0 148378954 148382956 -
3 domain predictions
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Lj0g3v0287459.1
n.a. PREDICTED: choline transporter-like protein 2-like [Glycine max] gi|356517164|ref|XP_003527259.1| chr0 149356968 149361462 +
2 domain predictions
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Lj0g3v0287459.2
n.a. PREDICTED: choline transporter-like protein 2-like [Cicer arietinum] gi|502168246|ref|XP_004514344.1| chr0 149358244 149361462 +
3 domain predictions
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Lj0g3v0306559.1
n.a. Choline transporter-like protein 5-A [Medicago truncatula] gi|357488431|ref|XP_003614503.1| chr0 159944664 159948849 -
3 domain predictions
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Lj1g3v3981460.1
n.a. PREDICTED: protein pns1-like [Cicer arietinum] gi|502107299|ref|XP_004493221.1| chr1 47366496 47368528 -
3 domain predictions
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Lj3g3v0824710.1
n.a. PREDICTED: protein PNS1-like [Glycine max] gi|356539148|ref|XP_003538062.1| chr3 10171413 10174732 -
3 domain predictions
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Lj5g3v2217210.1
n.a. PREDICTED: CTL-like protein DDB_G0274487-like [Glycine max] gi|356574175|ref|XP_003555227.1| chr5 31936854 31940451 -
3 domain predictions
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Lj5g3v2217210.2
n.a. PREDICTED: CTL-like protein DDB_G0274487-like [Glycine max] gi|356574175|ref|XP_003555227.1| chr5 31936854 31940451 -
3 domain predictions
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LotjaGi1g1v0038500_LC.1
n.a. Plasma-membrane choline transporter family protein; TAIR: AT1G25500.1 Plasma-membrane choline transporter family protein; Swiss-Prot: sp|Q483A0|CYSD_COLP3 Sulfate adenylyltransferase subunit 2; TrEMBL-Plants: tr|A0A1J7FSI7|A0A1J7FSI7_LUPAN Uncharacterized protein; Found in the gene: LotjaGi1g1v0038500_LC LjG1.1_chr1 5351089 5351922 +
2 domain predictions
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LotjaGi1g1v0648800.1
n.a. Plasma-membrane choline transporter family protein; TAIR: AT3G03700.1 Plasma-membrane choline transporter family protein; Swiss-Prot: sp|Q4WYG7|PNS1_ASPFU Protein pns1; TrEMBL-Plants: tr|K7MF21|K7MF21_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0648800 LjG1.1_chr1 120665650 120675178 -
3 domain predictions
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LotjaGi2g1v0279600.1
n.a. Choline transporter-like protein; TAIR: AT1G25500.2 Plasma-membrane choline transporter family protein; Swiss-Prot: sp|Q869R1|CTLHB_DICDI CTL-like protein DDB_G0274487; TrEMBL-Plants: tr|G7JYE2|G7JYE2_MEDTR Plasma-membrane choline transporter family protein; Found in the gene: LotjaGi2g1v0279600 LjG1.1_chr2 75099155 75105273 -
3 domain predictions
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LotjaGi3g1v0049400.1
n.a. Choline transporter-related family protein; TAIR: AT3G15380.1 Plasma-membrane choline transporter family protein; Swiss-Prot: sp|Q8BY89|CTL2_MOUSE Choline transporter-like protein 2; TrEMBL-Plants: tr|I1KDY6|I1KDY6_SOYBN Uncharacterized protein; Found in the gene: LotjaGi3g1v0049400 LjG1.1_chr3 5166154 5171775 +
3 domain predictions
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LotjaGi3g1v0049400.2
n.a. Choline transporter-related family protein; TAIR: AT3G15380.1 Plasma-membrane choline transporter family protein; Swiss-Prot: sp|Q8BY89|CTL2_MOUSE Choline transporter-like protein 2; TrEMBL-Plants: tr|I1KDY6|I1KDY6_SOYBN Uncharacterized protein; Found in the gene: LotjaGi3g1v0049400 LjG1.1_chr3 5166345 5171500 +
3 domain predictions
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LotjaGi3g1v0118600.1
n.a. Plasma-membrane choline transporter family protein; TAIR: AT5G13760.1 Plasma-membrane choline transporter family protein; Swiss-Prot: sp|Q869R1|CTLHB_DICDI CTL-like protein DDB_G0274487; TrEMBL-Plants: tr|A0A0S3SJG3|A0A0S3SJG3_PHAAN Uncharacterized protein; Found in the gene: LotjaGi3g1v0118600 LjG1.1_chr3 14522250 14525974 -
3 domain predictions
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LotjaGi3g1v0118600.2
n.a. Plasma-membrane choline transporter family protein; TAIR: AT5G13760.1 Plasma-membrane choline transporter family protein; Swiss-Prot: sp|Q869R1|CTLHB_DICDI CTL-like protein DDB_G0274487; TrEMBL-Plants: tr|A0A0S3SJG3|A0A0S3SJG3_PHAAN Uncharacterized protein; Found in the gene: LotjaGi3g1v0118600 LjG1.1_chr3 14522913 14525543 -
3 domain predictions
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LotjaGi3g1v0148200_LC.1
n.a. Plasma-membrane choline transporter family protein; TAIR: AT1G25500.1 Plasma-membrane choline transporter family protein; Swiss-Prot: sp|P0CM93|PNS1_CRYNB Protein PNS1; TrEMBL-Plants: tr|A0A1J7FSI7|A0A1J7FSI7_LUPAN Uncharacterized protein; Found in the gene: LotjaGi3g1v0148200_LC LjG1.1_chr3 19942333 19947122 -
2 domain predictions
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LotjaGi3g1v0148200_LC.2
n.a. Plasma-membrane choline transporter family protein; TAIR: AT1G25500.1 Plasma-membrane choline transporter family protein; Swiss-Prot: sp|P0CM93|PNS1_CRYNB Protein PNS1; TrEMBL-Plants: tr|A0A1J7FSI7|A0A1J7FSI7_LUPAN Uncharacterized protein; Found in the gene: LotjaGi3g1v0148200_LC LjG1.1_chr3 19943672 19947222 -
2 domain predictions
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LotjaGi3g1v0266300.1
n.a. Choline transporter-related family protein; TAIR: AT3G15380.1 Plasma-membrane choline transporter family protein; Swiss-Prot: sp|Q8BY89|CTL2_MOUSE Choline transporter-like protein 2; TrEMBL-Plants: tr|I1LUZ7|I1LUZ7_SOYBN Uncharacterized protein; Found in the gene: LotjaGi3g1v0266300 LjG1.1_chr3 50307750 50319959 -
3 domain predictions
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LotjaGi5g1v0341600.1
n.a. Choline transporter-like protein; TAIR: AT1G25500.2 Plasma-membrane choline transporter family protein; Swiss-Prot: sp|Q869R1|CTLHB_DICDI CTL-like protein DDB_G0274487; TrEMBL-Plants: tr|I1LEY5|I1LEY5_SOYBN Uncharacterized protein; Found in the gene: LotjaGi5g1v0341600 LjG1.1_chr5 65880119 65886455 -
3 domain predictions
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LotjaGi5g1v0341600.2
n.a. Plasma-membrane choline transporter family protein; TAIR: AT1G25500.2 Plasma-membrane choline transporter family protein; Swiss-Prot: sp|Q4WYG7|PNS1_ASPFU Protein pns1; TrEMBL-Plants: tr|I1LEY5|I1LEY5_SOYBN Uncharacterized protein; Found in the gene: LotjaGi5g1v0341600 LjG1.1_chr5 65882961 65884020 -
3 domain predictions
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LotjaGi5g1v0341600.3
n.a. Plasma-membrane choline transporter family protein; TAIR: AT1G25500.2 Plasma-membrane choline transporter family protein; Swiss-Prot: sp|Q869R1|CTLHB_DICDI CTL-like protein DDB_G0274487; TrEMBL-Plants: tr|I1LEY5|I1LEY5_SOYBN Uncharacterized protein; Found in the gene: LotjaGi5g1v0341600 LjG1.1_chr5 65882961 65885635 -
3 domain predictions
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LotjaGi5g1v0341600.4
n.a. Plasma-membrane choline transporter family protein; TAIR: AT1G25500.2 Plasma-membrane choline transporter family protein; Swiss-Prot: sp|Q4WYG7|PNS1_ASPFU Protein pns1; TrEMBL-Plants: tr|I1LEY5|I1LEY5_SOYBN Uncharacterized protein; Found in the gene: LotjaGi5g1v0341600 LjG1.1_chr5 65882961 65885759 -
3 domain predictions
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LotjaGi5g1v0341600.5
n.a. Choline transporter-like protein; TAIR: AT1G25500.3 Plasma-membrane choline transporter family protein; Swiss-Prot: sp|Q869R1|CTLHB_DICDI CTL-like protein DDB_G0274487; TrEMBL-Plants: tr|I1LEY5|I1LEY5_SOYBN Uncharacterized protein; Found in the gene: LotjaGi5g1v0341600 LjG1.1_chr5 65882961 65885759 -
3 domain predictions
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