Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message
| Field | Value |
|---|---|
| Gene ID | LotjaGi5g1v0341600 |
| Transcript ID | LotjaGi5g1v0341600.1 |
| Related isoforms 4 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Choline transporter-like protein; TAIR: AT1G25500.2 Plasma-membrane choline transporter family protein; Swiss-Prot: sp|Q869R1|CTLHB_DICDI CTL-like protein DDB_G0274487; TrEMBL-Plants: tr|I1LEY5|I1LEY5_SOYBN Uncharacterized protein; Found in the gene: LotjaGi5g1v0341600 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr5:65880119..65886455) extracted from Lotus japonicus Gifu genome v1.2.
ATTTCCAATGAACTTTATTCAATACAAACATATAAGACAAATTCCGTTGGGGGAGTTTGAGTCCCTGGTAAAAGCCAAGC CAATTTGTTCAACTCTGCTTCCAGAAAGAAGAGAACGATTCTACTCTCTATCTATCTCTATCTGTTAGCCGTTAACTTTC AGTTTACTTTCTGAGCAGTTTCCTTCGAATTCAATTGTCTTCTTCTTCTTCTACTACTATTCATATTCAAAACCCTAATA AACAAATCCCATTGACCTTCTTCTCTCTAAGAAACCTTTCGCCTTAGTCCTCACGTTTTCTCCATTTCCACACAGCCTCT CTATTTCTATATACAATACACAACACAATGCTTCTCCATTGCTTCCAATGATGGATTCTCCCTCTTCCTCTTCCTCTGAG TTTGCTTCCATAGCCACAGCCAATCAGGTATCTCAAATAATCATTTTTCACTCTTTTTCTCTATCTGGGTAACCAATTAT TTGTTACTTCATCATTTTAATTGATTTAGTTCTTCTATCTGAGTACCCAAGTAACCCAACCACTCTCTAATGGCAAAAAG ATTCCATTTTTCTGCTTTAAAGGGAGAATTGACTAAGTTTGTGTATCTGGGTCATTTTGACTGGTCTTTGGTGTCCCCAG TTACCCTCTAATGGCGAAAACTTTTACTGTTTTCACTGGTTTAGTTCTACTTGGTTGTTTTTAATTCTGTTGACTAGTGA GAATTGAGTTCCAAGTTTCTAAATTCTGCTGATTTTGTTGTGGTAGAGTCTAGCGAGAAGTCGGAGAAGTGGCGATGGCA GTGGTAGTGAAGTGGCGGTGGTGGAAGAATCGCGGCCGTGGCATGATGTTTTCTGGTTAGGAATATTTGTAATCCATTTG ATTGGGCTGGGGTTCCTTCTAGGGGTTCTTGGCCTTAACAGATTTGAGCAAGAGAATAGACTTAACATTGATAAGTACAC GTCTCGGTTCTCTGAGAATGAGGCTGGGTTGACGGAGACTTACTGGCCGCTCTATGCCGCTGCTGCTGGGGTTGGGACTG TTCTTGGATGGATTTGGTTGTTGTTGTTGGGTTCCCAGGCTACTCAAATGATGAAGTTTTCTGTCCACATCCTCACCACT TATCTTGCTGTCATCAGTGTTCTGTGTTTCTGGGCTAAGCAGATTTTCTGGGGGGTTGCTTTTGGTATTGGAGCTTCTCT GCAGTTCTTGTATGTCATATCCGTCGTAGACAGGTATAGACCTGAAATCGAATTGTCCTTTACATGTTTTATGTTGGATT GAGTTTAAGTTGTTTTTCTATTACTGAGTGATTGCATAAAGCGAGTCATATTGGTGGTAGATAAGGAATAGGATAGGCCT TGAATGTTAGTATAAGTGTAAGAATATTTGGTCGGTTTCACTTTTTTTGCATTCTGTTTTAATGGAGTCTATAAAGGTTC CCTGTGGCTTCTTTTCTTCTCCAGACTTCCATTTACAATGTTAGTTCTGCAAAAAGCTGTGAAGATGGTTTGGAGTCTTC CTGAGGTTATGAGAGTGTCATACGCATTTATGCTTGTTGTGCTTTTATGGATGGTGTTATGGTCATTTGGAGCAGCAGGT GTTGTGGCTTCAAGCATGGGTGATGGCGGACGCTGGTGGCTTCTTGTGGTGAGCTGGCAAGTTTTGCTCTTCATTCTTAC TGTACTTGGTTGGACTGGTTATGGAAGCATGTTTCTTAAGCTTCCTCATTCGATTATGCTGATATTGCAATTCATTCTTG CAGGTTTTCTCTGTAAGCTTATTTTGGACAGGCGCAGTACTCTGTAATACTGTACATGTTATAGTGTCTGGGATGGTGTT TCTTGTTCTTCTCCATGGCGGTAGAGAGGCAGCATCGATTCCTGCTAACTCCTTAAAGAAATCTTTACAGTCTTCTTTAA CAACATCTTTTGGCAGCATTTGCTATGGCTCGTTATTTACTGCTGCTATTAGGACACTACGGTGGGAGGTAACAGATCAT TTGCATTTTGCGACTGATTTGAAGTTCATTTCTTTTATTCATGAAGGCTTTTTCTTCTTTCAGATTCGTGGAATTCGGTC AAAGATTGGCAATAATGAGTGTTTGCTTTGCTTTGTTGATTTCCTTTTCCATCTTGTGGAGACTCTTGTTCGTTTTTTTA ACAAGTATGCCTATGTTCAGGTAAACTTCGGCGTCCAAAGTCCATGTTATTAGCCAGTTCTCAATATGATATATATATAT ATATATATATATATATATATATATATTGCATCTTCTACATGACAATCAAACATGAAATATGGTTGATTTTCCTATAGTTT AATTTACACTGGATGTGTTGTACTCTTTGGATCACCAGAAAGAGTTCTATGATAATTTAAATATAGCATCTAGACAACTT TGTTGAAATTTGGTGAATGCATTGGTTCTTGCAAAATTGAGGCATGGTTCTTTGCTCATGTTCTTACAGATTGCTGTTAA TGGCAAAAGCTTCAACCATTCCGCTAGAGATGCGTGGGAGTTATTCCAGTCAACTGGAGTTGAAGCTCTTGTGGCCTATG ATTGTTCAGGTGCTGTCCTGCTCATGGGCACCATTTTTGGTGGGCTGATAACTGGAACTTGCTCTGGGATTTGGGCATGG GTTAAATGGAGTGACAGAGTTATTATGATTGGGTCCACGTCCATGCTGATGGGGATGGTACTGGTAAGTTTATAATCTCC TTGTTGGGGCTTGGACTACAAGCTTTTGGTTGAACTTTTTACAGTAATGATACTCAGATACCCATTTTTCTCTCTCACAC ACATTTCTTGCTGGGTTTTTGTTGGATGTCTGCGAATTATTTTCCAATTCCTTGTTCTCCAAAATTGATGAGGAACACTG ATAGCATGTTTGGACTAACTTCTCTTTCATTAGAATTAATTCTGACACCCAGAAGCTACTTACAAAAGCTTCTCCCAAGA ATTAATTTTGGCTTTAGAATCAATTATAGAAAGATTTCCGAGCATACATTGAATTGTTATTATTATAATTACTCCGGTCC TTTGCATTTCTCTATTAATCAAAGACATTGATGTTGGCATGCCATGATAATCATTCCCTGACATATGTTGACTATAAAAA ATATTCAAACTGTATTGTTGAATTTTAAGTTTTTTATAGGCACATGGCACAGCTAAATGATGGCCATTCCTTACATATAT CTATTGTTATATCTAAGAATCAGTCAAGCTGTATAATGTAGAACATGTGATTTTTGTGCATGTGACATGAAATACATAAT AAAATTTTCAGGTTGGGTTGGCAATGGTAGTGGTGGAAAGTGCTGTTACATCCATATATATCTGCTATGCAGAAGACCCC TTATTGATTCATAGATGGGACGCTGACTTTTTCAACCAGATTTCTGAGACACTGCATGAACGACTTCAATATAGGAGTGC TCGAGGAAGGGAAGTTTTGACCCACTCGCGGCTCCAAGAAAACGCCTCTATTTGAGTCTGAGGAATTGCATTGTTTCGTA TTACCACACTTTGTTTATCCATTATGGTTCATTCATGTCTAGCATATTTTCCCTTTTTTGTGTGGTTTTTAATAGGGTAA TTTTCATATTGTGTGTTAAATTAATAGGAATAGGAGAAAGTCCATGTTGTCTCATGGTCTTTTCGTGTATAAGAATGCAT AGATAAAACACAAAATGTACAGTTTCTATTAATTTTGGCAAAGAAATAAAAGCTTACGTTATTGAGATAGGTTTGAAAAT TCCAAACTGTAGTTCATCCATATATGCATGTTTTTTCAGTGTTTGGTGAGCTACATAACTTGTCACTAATACTCAAGTGT AACTCATTCCCTTAATAAGGACTTAAGCCCCTTTCTTCATGATTTTGCAATTAGCAATAGCCGATTTGATTTCAGCAAGA GGCATTTGGTGCCTGTTTGGAAATTATTATACAATTGATTCTAAAGTTAGAATTAGTTATTGGGAGAAGATTCTGTGCTA AATATCAGTATTGATTTACAAGAAAAGAGAAATTGATCCAAACATGTTGTTAATATATACATATACACAAATACACAGAG AGATTAAGCATTAAGCAATCTAAGTAATAAAACAGAATCAGAGACACATGAAGGACTTCACACGAGCCATCATTTCATGG GCTCTGATCTTTGACACCTGAGATTTGCTTAGAATCTGAAATGCATGTCCAACACCTTTGAAAACCACACACTCAACTCT TTTACCAGCTTTTACTAGAGCATCACACAGCTTCAAGTTCCTATCCTTCAATATGTCCATCTCTGAGACACACACCAAGG TTGGAAAGAGCTTCAATTCCTCCAATTTCAGGGACCCTCTAACCAATGGATTGCACCATGGATGATCACGACCAGCACCA GATGGTAGTGCCAAGCGCCAGTAAGTATCAGAAGCTGCCAAGTTCAAAGCAGAGCCTGGTGATTGTGCCATGCATTTCTC TGAGACTGTTCTGACTTCACCACCAAAAAAAGGTTGTATCAAAATGAGACCCTTTAAATTCAAAGGCCTTAAAGCAGCAC CTGTAGAAATTATAAGAGCAGCATGTATCAAAATCTAGAATTTAGATATATAATATAGCATTACGTATCACACATAACAA AGAATTAAAGATAAAGATAAATAAGAATATAGAGTGTGTCAAACTAGAGGTGTTAATTCGTGCTTTGCCCATGGGGTATT GCTTTTAAAAAAAAATCATTTGAAACATAATTTTCAGAAAATAAATTAAGGCAATTTTTTTTTTCATTTTTACTACATGA AAAAATAAAACACATACAAATGAATTTTTTTTTTGTTATTACTCTTATTTATTTATTTTATATTAATTTTAAATGCAACT GAGTTCTTTATAGTATAAATAATGAACTAAATGGTACTCTCCTTTTCAAATTTTCAAGAACAATTCAAAATCACACATTT TGATTAATCGATTAATACTAATCAAACATAATATAAACAATCTAACAGTACCTTCACATGCAGCTAGCCTTGTGGCAACA TAGTAAGCTATGTTAGCACCAGCACTGTCCCCTGCCAAGTAGACACTAGAAAAGTTGCATTTTGCTGTCCACCATTCACT ACCCTTGTATTGATGTAGCACCTGTTGTTTCACCCACATTAGAGCCTTTAACCCATCATCATAAGGAGCTGGGAGAGGGT TCTCTGGGGCCAATCTATAATTCACTGACATAATCAAACACCCCACTTTAGCAGCTAGCCTAGCAAGGAAATCATGGTAG CAACTCCAAGCTGCAGAGCCAACACAGAAGCCACCCCCATGAAAATAAACCATTAAAGGTAGCTTCTTTTGGCTAATTGG AACATAGAAACGTGCCCAAGTGTTTGTAACATTGTCAATGACCATGTCTCTTGAATTCACATTCAGCTCTGGGGTTAAAG CAGAAGTGACACATGGAACAATTTGAGGTCTTTCCACATGTCCATCATTGTGTACTTTGATAAGGCCTTCAATTTCCTCA ACCACAGAAGGACTATGGTGTTTGTAGTCTTTTCTGGTGTATTGTGGGTTATGGCTTAGACTTGAGGTGAGAGCAGCCAT TATGAGAAGGTGCTGAATCAAGAAACAAAAGAATGGAGTTTGTTTTGTGGTGATTGGGTTTGAAGATTGCTGGTTAGTGG TTTCCTTTATATACAGAGGAAGTGAGTGGAAATAACACTGTAAGGGGGGAAAGTGGTCAATGAATCTTTACGTGCCAAGT GGACAGTTTGTGCAAAGTCTACACGTGTCTTCACGTGAACTCACATGTGGAGGGTCATCTCCATTTTCAGATAAGCCTAC AATTCTGAGAATTCTTAGCTTTGACTATAAAGCTGGGAAGCATGAACAACTAAAAAAGGGGAAAGGGTTGATAGACACTG CCAGAGGTTTAAAAAAGAGCGAATTAGAAAAATAAGGTGAATGAAAGATTGAGTTGATGGTTGAAAACTCACCTACAATT GATTCTTAAAGTGTGATTAATTATGAGAAGAAGTTTATCTGATAACATGTTTAAATGAATTTATTGTTAAGTTTCACCTT AACAAGTGAAATGACAATTGAAGTGCTTATATGTGAGTAGATAGTTCTTTCATTTAGATGTAGTTTTTGAGGTAGAGTTA TATCTTCTAAACTCTAATATGAATTAATTGCATTTTTTAATATGTATATTTTTTCTTCCTGAACAATTAATAAGGAACTT AGAGAGTATACGAGTCCGTCCAAACATGAGGCAATATGACTACTGAAGCGCTTATACGTGAGAAGACAATCCTCATAACT GATTTGAGGGAAAGTAA
CDS sequence (LotjaGi5g1v0341600.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGATGGATTCTCCCTCTTCCTCTTCCTCTGAGTTTGCTTCCATAGCCACAGCCAATCAGAGTCTAGCGAGAAGTCGGAG AAGTGGCGATGGCAGTGGTAGTGAAGTGGCGGTGGTGGAAGAATCGCGGCCGTGGCATGATGTTTTCTGGTTAGGAATAT TTGTAATCCATTTGATTGGGCTGGGGTTCCTTCTAGGGGTTCTTGGCCTTAACAGATTTGAGCAAGAGAATAGACTTAAC ATTGATAAGTACACGTCTCGGTTCTCTGAGAATGAGGCTGGGTTGACGGAGACTTACTGGCCGCTCTATGCCGCTGCTGC TGGGGTTGGGACTGTTCTTGGATGGATTTGGTTGTTGTTGTTGGGTTCCCAGGCTACTCAAATGATGAAGTTTTCTGTCC ACATCCTCACCACTTATCTTGCTGTCATCAGTGTTCTGTGTTTCTGGGCTAAGCAGATTTTCTGGGGGGTTGCTTTTGGT ATTGGAGCTTCTCTGCAGTTCTTGTATGTCATATCCGTCGTAGACAGACTTCCATTTACAATGTTAGTTCTGCAAAAAGC TGTGAAGATGGTTTGGAGTCTTCCTGAGGTTATGAGAGTGTCATACGCATTTATGCTTGTTGTGCTTTTATGGATGGTGT TATGGTCATTTGGAGCAGCAGGTGTTGTGGCTTCAAGCATGGGTGATGGCGGACGCTGGTGGCTTCTTGTGGTTTTCTCT GTAAGCTTATTTTGGACAGGCGCAGTACTCTGTAATACTGTACATGTTATAGTGTCTGGGATGGTGTTTCTTGTTCTTCT CCATGGCGGTAGAGAGGCAGCATCGATTCCTGCTAACTCCTTAAAGAAATCTTTACAGTCTTCTTTAACAACATCTTTTG GCAGCATTTGCTATGGCTCGTTATTTACTGCTGCTATTAGGACACTACGGTGGGAGATTCGTGGAATTCGGTCAAAGATT GGCAATAATGAGTGTTTGCTTTGCTTTGTTGATTTCCTTTTCCATCTTGTGGAGACTCTTGTTCGTTTTTTTAACAAGTA TGCCTATGTTCAGATTGCTGTTAATGGCAAAAGCTTCAACCATTCCGCTAGAGATGCGTGGGAGTTATTCCAGTCAACTG GAGTTGAAGCTCTTGTGGCCTATGATTGTTCAGGTGCTGTCCTGCTCATGGGCACCATTTTTGGTGGGCTGATAACTGGA ACTTGCTCTGGGATTTGGGCATGGGTTAAATGGAGTGACAGAGTTATTATGATTGGGTCCACGTCCATGCTGATGGGGAT GGTACTGGTTGGGTTGGCAATGGTAGTGGTGGAAAGTGCTGTTACATCCATATATATCTGCTATGCAGAAGACCCCTTAT TGATTCATAGATGGGACGCTGACTTTTTCAACCAGATTTCTGAGACACTGCATGAACGACTTCAATATAGGAGTGCTCGA GGAAGGGAAGTTTTGACCCACTCGCGGCTCCAAGAAAACGCCTCTATTTGA
Protein sequence (LotjaGi5g1v0341600.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MMDSPSSSSSEFASIATANQSLARSRRSGDGSGSEVAVVEESRPWHDVFWLGIFVIHLIGLGFLLGVLGLNRFEQENRLN IDKYTSRFSENEAGLTETYWPLYAAAAGVGTVLGWIWLLLLGSQATQMMKFSVHILTTYLAVISVLCFWAKQIFWGVAFG IGASLQFLYVISVVDRLPFTMLVLQKAVKMVWSLPEVMRVSYAFMLVVLLWMVLWSFGAAGVVASSMGDGGRWWLLVVFS VSLFWTGAVLCNTVHVIVSGMVFLVLLHGGREAASIPANSLKKSLQSSLTTSFGSICYGSLFTAAIRTLRWEIRGIRSKI GNNECLLCFVDFLFHLVETLVRFFNKYAYVQIAVNGKSFNHSARDAWELFQSTGVEALVAYDCSGAVLLMGTIFGGLITG TCSGIWAWVKWSDRVIMIGSTSMLMGMVLVGLAMVVVESAVTSIYICYAEDPLLIHRWDADFFNQISETLHERLQYRSAR GREVLTHSRLQENASI
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 47 | 47 | - | – | |
| PANTHER | 24 | 490 | 467 | 2.3E-297 | ||
| PANTHER | 24 | 490 | 467 | 2.3E-297 | – | |
| Phobius | 48 | 70 | 23 | - | – | |
| TMHMM | 48 | 70 | 23 | - | – | |
| Phobius | 71 | 99 | 29 | - | – | |
| TMHMM | 99 | 121 | 23 | - | – | |
| Phobius | 100 | 121 | 22 | - | – | |
| Phobius | 122 | 132 | 11 | - | – | |
| TMHMM | 131 | 150 | 20 | - | – | |
| Phobius | 133 | 151 | 19 | - | – | |
| Phobius | 152 | 156 | 5 | - | – | |
| TMHMM | 155 | 174 | 20 | - | – | |
| Phobius | 157 | 179 | 23 | - | – | |
| Pfam | 158 | 452 | 295 | 1.4E-53 | ||
| Phobius | 180 | 199 | 20 | - | – | |
| Phobius | 200 | 227 | 28 | - | – | |
| TMHMM | 202 | 224 | 23 | - | – | |
| Phobius | 228 | 232 | 5 | - | – | |
| Phobius | 233 | 266 | 34 | - | – | |
| TMHMM | 236 | 258 | 23 | - | – | |
| Phobius | 267 | 385 | 119 | - | – | |
| TMHMM | 289 | 311 | 23 | - | – | |
| Phobius | 386 | 409 | 24 | - | – | |
| TMHMM | 387 | 409 | 23 | - | – | |
| Phobius | 410 | 414 | 5 | - | – | |
| TMHMM | 415 | 437 | 23 | - | – | |
| Phobius | 415 | 437 | 23 | - | – | |
| Phobius | 438 | 496 | 59 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi5g1v0341600.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
Loading expression data from ljgea-geneid. Please wait…