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| Field | Value |
|---|---|
| Gene ID | LotjaGi5g1v0345100 |
| Transcript ID | LotjaGi5g1v0345100.2 |
| Related isoforms 2 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Lipoyl synthase; TAIR: AT5G08415.1 Radical SAM superfamily protein; Swiss-Prot: sp|B9RX57|LISC_RICCO Lipoyl synthase, chloroplastic; TrEMBL-Plants: tr|A0A0R4J646|A0A0R4J646_SOYBN Lipoyl synthase, chloroplastic; Found in the gene: LotjaGi5g1v0345100 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr5:66184407..66187106) extracted from Lotus japonicus Gifu genome v1.2.
AACGAACATTGTTCTCTCCGCTTCCTTGCTACAAAATCTCCAAACCCAACCCAAAAACCTCTCGAATTCACACTCAGTAA TCAACAATGATTCAGCAATCGCTCTTCAACCCACCTTCGATCCCGTTCTCAACAACAACAACAAAACGCTCCCGTTTCCA CCACCCTCCTTCCGCCTCCGCGAAGCTGACGACGACGACGGAATCGGAGCAGCAGAAGAGTGGGCTTGGACCGTACACGG GGAGAGACCCGAACGTGAAGAAGCCGGAATGGTTGAGACAGAAAGCTCCTCAAGGCGAAAGGTTCCAGCAGATTAAGGAT TCATTGTCACATTTGAAGCTCAACACTGTTTGCGAGGAGGCTCAGTGCCCCAACATTGGAGAGGTCTCATTCAATTGTTC TGTATATTGCCATGTTGTTTTGATTTTTGATAGGAAAATAAATTGTGTATTAATGGAAGTAATAATTGATTGTGACTATA ATGTGTTGTGTTGACATTTGAATTGTTATGGTTAGTGTTGGAATGGAGGTGGAGATGGTATCGCGACTGCGACGATCATG CTTCTTGGAGATACTTGCACCCGTGGCTGTAGATTTTGCGCTGTGAAGACAAGTAGAAACCCGGCGCCTCCTGATCCGAT GGAGCCGGAGAATACTGCCAATGCCATTGCAAGTTGGGAGTGAGTACTTGCTTTGTGCTATTTATACTAACGAGTGTTAT CTTAATGCGAGTTTTGCAATTGCTAACACACTTTTTCCAACACTATTAGTTGTAAGTTGGGTGAAGGATTGATGAAACTG GAAGTGCGAGGGTCTGCTTGGTTTATATTTGAATAGAGTGACTTTTTGGAGAATTATGTTAGAAAGAATTAATAATGGAA GGATGCATTTTGGTAGAATGATTTGTGTTTAGGAATGATATTGTAAAAGTAAGTTTCAAATAATTCTTTTTGTTTGGATA GTATGATAGAATTACTTTTGAAGTGCAAATACTACATACAGTTATATTTTATGGTCTCACACTAGAATGAATGTTTCTCA GCGGAAAAGTAGTAAGTTTTGACTTCTCGTAGAAGGCCTTTTAGTGGAACTTATATGAACTTCAACCAATATGAGAAAGT GTGTTAGAGAGAGTGTGCTAGAGAGTGTTCAACAAACAAATATATATACAATCTGCTTCTTATGCATTATGATCAGAATC AGATATGTACTTAAGCAATCATCTTGATGGTCAGTGTAATTAACTTTTTGCAAACTTTTGTAATTTATAGAAGGTTATCA CATTCTTAGTTAAATGACTAGATTGATCACAGATTTAACATGTTCACCCAAGACTTTATTAGATCTCATTCCGTGTTAAA TATAAATTACCAATTTTCAGTGTGGATTACATTGTCCTAACAAGCGTGGATCGTGATGATATACCTGATGGAGGAAGTGG CCATTTTGCTCAGACTGTCAAAGCTATGAAGGTGCTTTGATTGTTGAATTGTTGTTTCTTACAACGCAAATAGAAACTAC ATGTGAGCTTAATTGTTGTCTTTTGTATTGCTTGTGCAGAATCTCAAACCTGAGATCATGGTGGAGTGCTTAACCTCTGA TTTTCGGGGTGACCTTACGGCTGTAGAAACTTTGGTTCACTCAGGTTTAGATGTTTTTGCTCACAATGTTGAGACAGTCA AACGGCTCCAGAGAATTGTTAGAGATCCCAGGGCTGGGTAAGTGCATTGCTGATGCTGATCCAACTGCTTTGTCATAATA TCAACCTTTGCTTCTTCAAGAGTATATGAAAAGCGTATGGTTACACACATCATACATTTTCTTAATAGCAATATACATAT TTGGGAAAAAATACTCGAAATATAGAGGCATGAATATAAGAAATATATGAACAGTAATTTTAAATAGTTATTTCATATAT GTAGTGTGGTTGCAGGTATGAGCAAAGCTTGTCAGTTCTGAAACATGCAAAACATAGCAAGGAGGGTATGATAACCAAAA CTTCAATAATGCTGGGCCTTGGAGAATCCGATGATGAGCTTAAGGAAGTGATGGCTGATTTGAGGGCCATAGATGTGGAT ATTTTGACACTTGGTCAATATTTGCAGGTTAGTTATGTAAAATTCCGTCCAGAGAAAAAAAGTTAATGTAAAATTCCTTG ATGCTTTTCACACCTACTTAGAAATGGAGTCTGAGATTCTGTTGTAGCTAATCTAATCTTCACATGATTTCATAATTTTA AGTAGCTATACCATGTTTTATTGAATTCGTATTTGTACTGTGTTTGGCTTATCTGACACAAGCTTTCTTTCATATTGGTT GTTAACTTCTTGTGGCTCATAGTTGGTTAATTTAAAAGATGGTGTTGTTGCAGCCAACTCCCTTGCACTTGACTGTAAAA GAGTATGTTACTCCTGAGAAGTTTGCTTTCTGGAAAGAATACGGGGAGTCGATTGGTTTTCGTTATGTAGCTAGTGGGCC ACTGGTAAGCTCTCGGCAAATGCATTATAATTTGTCTGTTCCCTTCTTCTAGTATGACTTCACTGCATAGTCAGTGAAAT AACAAAAAAGGCAAATCTTCCTCATAGCATGTTCGGTTCCACGGTGAAATGCTCTACAATCACTCATGGTTAGAAACTAC AAGTCTTGTAGTAAACACGCCTTGAATTTTGTGTAAACTGTGGAATCAAACATGCTATAA
CDS sequence (LotjaGi5g1v0345100.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGATTCAGCAATCGCTCTTCAACCCACCTTCGATCCCGTTCTCAACAACAACAACAAAACGCTCCCGTTTCCACCACCC TCCTTCCGCCTCCGCGAAGCTGACGACGACGACGGAATCGGAGCAGCAGAAGAGTGGGCTTGGACCGTACACGGGGAGAG ACCCGAACGTGAAGAAGCCGGAATGGTTGAGACAGAAAGCTCCTCAAGGCGAAAGGTTCCAGCAGATTAAGGATTCATTG TCACATTTGAAGCTCAACACTGTTTGCGAGGAGGCTCAGTGCCCCAACATTGGAGAGTGTTGGAATGGAGGTGGAGATGG TATCGCGACTGCGACGATCATGCTTCTTGGAGATACTTGCACCCGTGGCTGTAGATTTTGCGCTGTGAAGACAAGTAGAA ACCCGGCGCCTCCTGATCCGATGGAGCCGGAGAATACTGCCAATGCCATTGCAAGTTGGGATGTGGATTACATTGTCCTA ACAAGCGTGGATCGTGATGATATACCTGATGGAGGAAGTGGCCATTTTGCTCAGACTGTCAAAGCTATGAAGAATCTCAA ACCTGAGATCATGGTGGAGTGCTTAACCTCTGATTTTCGGGGTGACCTTACGGCTGTAGAAACTTTGGTTCACTCAGGTT TAGATGTTTTTGCTCACAATGTTGAGACAGTCAAACGGCTCCAGAGAATTGTTAGAGATCCCAGGGCTGGGTATGAGCAA AGCTTGTCAGTTCTGAAACATGCAAAACATAGCAAGGAGGGTATGATAACCAAAACTTCAATAATGCTGGGCCTTGGAGA ATCCGATGATGAGCTTAAGGAAGTGATGGCTGATTTGAGGGCCATAGATGTGGATATTTTGACACTTGGTCAATATTTGC AGCCAACTCCCTTGCACTTGACTGTAAAAGAGTATGTTACTCCTGAGAAGTTTGCTTTCTGGAAAGAATACGGGGAGTCG ATTGGTTTTCGTTATGTAGCTAGTGGGCCACTGAATCACTCATGGTTAGAAACTACAAGTCTTGTAGTAAACACGCCTTG A
Protein sequence (LotjaGi5g1v0345100.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MIQQSLFNPPSIPFSTTTTKRSRFHHPPSASAKLTTTTESEQQKSGLGPYTGRDPNVKKPEWLRQKAPQGERFQQIKDSL SHLKLNTVCEEAQCPNIGECWNGGGDGIATATIMLLGDTCTRGCRFCAVKTSRNPAPPDPMEPENTANAIASWDVDYIVL TSVDRDDIPDGGSGHFAQTVKAMKNLKPEIMVECLTSDFRGDLTAVETLVHSGLDVFAHNVETVKRLQRIVRDPRAGYEQ SLSVLKHAKHSKEGMITKTSIMLGLGESDDELKEVMADLRAIDVDILTLGQYLQPTPLHLTVKEYVTPEKFAFWKEYGES IGFRYVASGPLNHSWLETTSLVVNTP
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| MobiDBLite | 1 | 58 | 58 | - | – | |
| MobiDBLite | 1 | 49 | 49 | - | – | |
| PIRSF | 8 | 345 | 338 | 1.2E-136 | ||
| PANTHER | 31 | 343 | 313 | 2.8E-196 | – | |
| PANTHER | 31 | 343 | 313 | 2.8E-196 | ||
| Pfam | 52 | 94 | 43 | 1.1E-10 | ||
| SFLD | 53 | 335 | 283 | 0.0 | – | |
| SFLD | 53 | 335 | 283 | 0.0 | ||
| TIGRFAM | 54 | 340 | 287 | 2.0E-117 | ||
| Hamap | 58 | 346 | 289 | 125.25 | ||
| SUPERFAMILY | 70 | 334 | 265 | 3.53E-52 | – | |
| Gene3D | 104 | 310 | 207 | 1.5E-18 | ||
| SMART | 110 | 319 | 210 | 3.6E-13 | ||
| CDD | 114 | 293 | 180 | 1.6952E-7 | – | |
| Pfam | 118 | 278 | 161 | 4.4E-15 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Catalytic activity | Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic. | ||
| Biological process | Lipoate biosynthetic process | The chemical reactions and pathways resulting in the formation of lipoate, 1,2-dithiolane-3-pentanoate, the anion derived from lipoic acid. | ||
| Molecular function | Lipoate synthase activity | Catalysis of the reaction: protein N6-(octanoyl)lysine + 2 sulfur + 2 S-adenosyl-L-methionine = protein N6-(lipoyl)lysine + 2 L-methionine + 2 5'-deoxyadenosyl. | ||
| Molecular function | Iron-sulfur cluster binding | Interacting selectively and non-covalently with an iron-sulfur cluster, a combination of iron and sulfur atoms. | ||
| Molecular function | 4 iron, 4 sulfur cluster binding | Interacting selectively and non-covalently with a 4 iron, 4 sulfur (4Fe-4S) cluster; this cluster consists of four iron atoms, with the inorganic sulfur atoms found between the irons and acting as bridging ligands. |
Expression pattern of LotjaGi5g1v0345100.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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