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TREX

Transcript Explorer
for L. japonicus reference genomes

The Transcript Explorer tool can be used to search for candidate Lotus genes using user-defined keywords, or to comb a specific genomic interval—a combination of chromosome and position range—for genes/transcripts of interest.

Repeat Search

  • IPR007197
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We have found 36 results. Now displaying 1 of 1 with 50 rows per page. This search has taken 7.195s to perform.

Transcript Name Description Chr Start End Strand Domain predictions GO predictions
Lj0g3v0131529.1
n.a. PREDICTED: oxygen-independent coproporphyrinogen-III oxidase-like protein sll1917-like [Cicer arietinum] gi|502133605|ref|XP_004501826.1| chr0 59839514 59841916 -
2 domain predictions
2 GO terms
Lj0g3v0285609.1
n.a. PREDICTED: elongator complex protein 3-like [Glycine max] gi|356508774|ref|XP_003523129.1| chr0 148259759 148264978 +
2 domain predictions
2 GO terms
Lj2g3v1728760.1
n.a. PREDICTED: CDK5RAP1-like protein-like [Glycine max] gi|356540793|ref|XP_003538869.1| chr2 26514805 26518129 +
2 domain predictions
2 GO terms
Lj2g3v2585500.1
n.a. PREDICTED: probable dual-specificity RNA methyltransferase RlmN-like [Cicer arietinum] gi|502097051|ref|XP_004490899.1| chr2 35435203 35441554 +
2 domain predictions
2 GO terms
Lj3g3v0930300.1
n.a. PREDICTED: molybdopterin biosynthesis protein CNX2-like [Glycine max] gi|356525689|ref|XP_003531456.1| chr3 10992313 10996774 +
2 domain predictions
2 GO terms
Lj3g3v0930300.2
n.a. PREDICTED: molybdopterin biosynthesis protein CNX2-like [Glycine max] gi|356525689|ref|XP_003531456.1| chr3 10993042 10996774 +
2 domain predictions
2 GO terms
Lj3g3v2780570.1
n.a. PREDICTED: lipoyl synthase 2, mitochondrial-like [Glycine max] gi|356543805|ref|XP_003540350.1| chr3 34213988 34218517 +
2 domain predictions
2 GO terms
Lj3g3v3599460.1
n.a. Biotin synthase [Medicago truncatula] gi|357474135|ref|XP_003607352.1| chr3 43546193 43549274 -
2 domain predictions
2 GO terms
Lj3g3v3755420.1
n.a. PREDICTED: CDKAL1-like protein-like [Glycine max] gi|356542899|ref|XP_003539902.1| chr3 45515460 45522025 -
2 domain predictions
2 GO terms
Lj5g3v0104720.1
n.a. PREDICTED: tRNA wybutosine-synthesizing protein 1 homolog isoform X1 [Cicer arietinum] gi|502126020|ref|XP_004499150.1| chr5 797873 803054 -
2 domain predictions
2 GO terms
Lj5g3v2240910.1
n.a. PREDICTED: lipoyl synthase, chloroplastic-like [Glycine max] gi|356575490|ref|XP_003555873.1| chr5 32231265 32234808 +
2 domain predictions
2 GO terms
LotjaGi1g1v0090900.1
n.a. Dual-specificity RNA methyltransferase RlmN; TAIR: AT2G39670.1 Radical SAM superfamily protein; Swiss-Prot: sp|Q8DG98|RLMN_THEEB Probable dual-specificity RNA methyltransferase RlmN; TrEMBL-Plants: tr|G7KBR0|G7KBR0_MEDTR 23S rRNA m2A2503 methyltransferase; Found in the gene: LotjaGi1g1v0090900 LjG1.1_chr1 13217820 13224334 -
3 domain predictions
2 GO terms
LotjaGi1g1v0234800.1
n.a. Oxygen-independent coproporphyrinogen III oxidase, putative; TAIR: AT5G63290.1 Radical SAM superfamily protein; Swiss-Prot: sp|P73245|Y1917_SYNY3 Oxygen-independent coproporphyrinogen-III oxidase-like protein sll1917; TrEMBL-Plants: tr|V7AWC4|V7AWC4_PHAVU Uncharacterized protein; Found in the gene: LotjaGi1g1v0234800 LjG1.1_chr1 55476734 55479228 -
2 domain predictions
2 GO terms
LotjaGi1g1v0235100.1
n.a. Elongator complex protein 3; TAIR: AT5G50320.1 radical SAM domain-containing protein / GCN5-related N-acetyltransferase (GNAT) family protein; Swiss-Prot: sp|Q93ZR1|ELP3_ARATH Elongator complex protein 3; TrEMBL-Plants: tr|A0A151R7U7|A0A151R7U7_CAJCA Elongator complex protein 3; Found in the gene: LotjaGi1g1v0235100 LjG1.1_chr1 55491555 55497461 -
3 domain predictions
2 GO terms
LotjaGi2g1v0385400.1
n.a. tRNA-2-methylthio-N(6)-dimethylallyladenosine synthase; TAIR: AT4G36390.1 Methylthiotransferase; Swiss-Prot: sp|Q8H0V1|CK5P1_ARATH CDK5RAP1-like protein; TrEMBL-Plants: tr|G7KGB3|G7KGB3_MEDTR Radical SAM methylthiotransferase, MiaB/RimO family protein; Found in the gene: LotjaGi2g1v0385400 LjG1.1_chr2 88149599 88153156 +
3 domain predictions
2 GO terms
LotjaGi2g1v0385400.2
n.a. tRNA-2-methylthio-N(6)-dimethylallyladenosine synthase; TAIR: AT4G36390.1 Methylthiotransferase; Swiss-Prot: sp|Q2R1U4|CK5P1_ORYSJ CDK5RAP1-like protein; TrEMBL-Plants: tr|K7LNH5|K7LNH5_SOYBN Uncharacterized protein; Found in the gene: LotjaGi2g1v0385400 LjG1.1_chr2 88150084 88152442 +
3 domain predictions
2 GO terms
LotjaGi2g1v0385400.3
n.a. tRNA-2-methylthio-N(6)-dimethylallyladenosine synthase; TAIR: AT4G36390.1 Methylthiotransferase; Swiss-Prot: sp|Q2R1U4|CK5P1_ORYSJ CDK5RAP1-like protein; TrEMBL-Plants: tr|K7LNH5|K7LNH5_SOYBN Uncharacterized protein; Found in the gene: LotjaGi2g1v0385400 LjG1.1_chr2 88150089 88152442 +
3 domain predictions
2 GO terms
LotjaGi2g1v0385400.4
n.a. tRNA-2-methylthio-N(6)-dimethylallyladenosine synthase; TAIR: AT4G36390.1 Methylthiotransferase; Swiss-Prot: sp|Q2R1U4|CK5P1_ORYSJ CDK5RAP1-like protein; TrEMBL-Plants: tr|K7LNH5|K7LNH5_SOYBN Uncharacterized protein; Found in the gene: LotjaGi2g1v0385400 LjG1.1_chr2 88150102 88152442 +
3 domain predictions
2 GO terms
LotjaGi2g1v0459900.1
n.a. Dual-specificity RNA methyltransferase RlmN; TAIR: AT3G19630.1 Radical SAM superfamily protein; Swiss-Prot: sp|Q6MDD0|RLMN2_PARUW Probable dual-specificity RNA methyltransferase RlmN 2; TrEMBL-Plants: tr|I3T8H2|I3T8H2_LOTJA Uncharacterized protein; Found in the gene: LotjaGi2g1v0459900 LjG1.1_chr2 95357089 95359342 -
2 domain predictions
2 GO terms
LotjaGi2g1v0459900.2
n.a. Dual-specificity RNA methyltransferase RlmN; TAIR: AT3G19630.1 Radical SAM superfamily protein; Swiss-Prot: sp|Q6MDD0|RLMN2_PARUW Probable dual-specificity RNA methyltransferase RlmN 2; TrEMBL-Plants: tr|I3T8H2|I3T8H2_LOTJA Uncharacterized protein; Found in the gene: LotjaGi2g1v0459900 LjG1.1_chr2 95357487 95358747 -
2 domain predictions
2 GO terms
LotjaGi3g1v0127600.1
n.a. GTP 3',8-cyclase; TAIR: AT2G31955.1 cofactor of nitrate reductase and xanthine dehydrogenase 2; Swiss-Prot: sp|Q39055|CNX2_ARATH GTP 3',8-cyclase, mitochondrial; TrEMBL-Plants: tr|I1KTQ5|I1KTQ5_SOYBN Uncharacterized protein; Found in the gene: LotjaGi3g1v0127600 LjG1.1_chr3 15687198 15692337 +
2 domain predictions
2 GO terms
LotjaGi3g1v0127600.2
n.a. GTP 3',8-cyclase; TAIR: AT2G31955.3 cofactor of nitrate reductase and xanthine dehydrogenase 2; Swiss-Prot: sp|Q39055|CNX2_ARATH GTP 3',8-cyclase, mitochondrial; TrEMBL-Plants: tr|I1KTQ5|I1KTQ5_SOYBN Uncharacterized protein; Found in the gene: LotjaGi3g1v0127600 LjG1.1_chr3 15687198 15692337 +
2 domain predictions
2 GO terms
LotjaGi3g1v0127600.3
n.a. GTP 3',8-cyclase; TAIR: AT2G31955.3 cofactor of nitrate reductase and xanthine dehydrogenase 2; Swiss-Prot: sp|Q39055|CNX2_ARATH GTP 3',8-cyclase, mitochondrial; TrEMBL-Plants: tr|D7MW86|D7MW86_ARALL Putative uncharacterized protein; Found in the gene: LotjaGi3g1v0127600 LjG1.1_chr3 15687722 15691685 +
2 domain predictions
2 GO terms
LotjaGi3g1v0127600.4
n.a. GTP 3',8-cyclase; TAIR: AT2G31955.1 cofactor of nitrate reductase and xanthine dehydrogenase 2; Swiss-Prot: sp|Q39055|CNX2_ARATH GTP 3',8-cyclase, mitochondrial; TrEMBL-Plants: tr|I1KTQ5|I1KTQ5_SOYBN Uncharacterized protein; Found in the gene: LotjaGi3g1v0127600 LjG1.1_chr3 15687722 15691685 +
3 domain predictions
2 GO terms
LotjaGi3g1v0127600.5
n.a. GTP 3',8-cyclase; TAIR: AT2G31955.1 cofactor of nitrate reductase and xanthine dehydrogenase 2; Swiss-Prot: sp|Q39055|CNX2_ARATH GTP 3',8-cyclase, mitochondrial; TrEMBL-Plants: tr|I1KTQ5|I1KTQ5_SOYBN Uncharacterized protein; Found in the gene: LotjaGi3g1v0127600 LjG1.1_chr3 15687842 15691685 +
3 domain predictions
2 GO terms
LotjaGi3g1v0441800.1
n.a. Lipoyl synthase; TAIR: AT2G20860.1 lipoic acid synthase 1; Swiss-Prot: sp|B7FM45|LIAS_MEDTR Lipoyl synthase, mitochondrial; TrEMBL-Plants: tr|V7BWP4|V7BWP4_PHAVU Lipoyl synthase, mitochondrial; Found in the gene: LotjaGi3g1v0441800 LjG1.1_chr3 85443020 85448534 +
2 domain predictions
2 GO terms
LotjaGi3g1v0535800.1
n.a. Biotin synthase; TAIR: AT2G43360.1 Radical SAM superfamily protein; Swiss-Prot: sp|P54967|BIOB_ARATH Biotin synthase; TrEMBL-Plants: tr|A0A1J7GGN8|A0A1J7GGN8_LUPAN Uncharacterized protein; Found in the gene: LotjaGi3g1v0535800 LjG1.1_chr3 95261212 95264511 -
2 domain predictions
2 GO terms
LotjaGi3g1v0535800.2
n.a. Biotin synthase; TAIR: AT2G43360.1 Radical SAM superfamily protein; Swiss-Prot: sp|P54967|BIOB_ARATH Biotin synthase; TrEMBL-Plants: tr|A0A1J7GGN8|A0A1J7GGN8_LUPAN Uncharacterized protein; Found in the gene: LotjaGi3g1v0535800 LjG1.1_chr3 95261348 95264456 -
2 domain predictions
2 GO terms
LotjaGi3g1v0535800.3
n.a. Biotin synthase; TAIR: AT2G43360.1 Radical SAM superfamily protein; Swiss-Prot: sp|P54967|BIOB_ARATH Biotin synthase; TrEMBL-Plants: tr|A0A1J7GGN8|A0A1J7GGN8_LUPAN Uncharacterized protein; Found in the gene: LotjaGi3g1v0535800 LjG1.1_chr3 95261559 95264288 -
2 domain predictions
2 GO terms
LotjaGi3g1v0556600.1
n.a. tRNA-2-methylthio-N(6)-dimethylallyladenosine synthase; TAIR: AT1G72090.1 Methylthiotransferase; Swiss-Prot: sp|Q6P4Y0|CDKAL_XENTR Threonylcarbamoyladenosine tRNA methylthiotransferase; TrEMBL-Plants: tr|I1LNN6|I1LNN6_SOYBN Uncharacterized protein; Found in the gene: LotjaGi3g1v0556600 LjG1.1_chr3 97447998 97457163 -
3 domain predictions
2 GO terms
LotjaGi3g1v0556600.2
n.a. tRNA-2-methylthio-N(6)-dimethylallyladenosine synthase; TAIR: AT1G72090.1 Methylthiotransferase; Swiss-Prot: sp|Q6NS26|CDKAL_XENLA Threonylcarbamoyladenosine tRNA methylthiotransferase; TrEMBL-Plants: tr|I1LNN6|I1LNN6_SOYBN Uncharacterized protein; Found in the gene: LotjaGi3g1v0556600 LjG1.1_chr3 97448097 97457171 -
3 domain predictions
2 GO terms
LotjaGi4g1v0165700.1
n.a. Dual-specificity RNA methyltransferase RlmN; TAIR: AT1G60230.1 Radical SAM superfamily protein; Swiss-Prot: sp|A0LQM1|RLMN_SYNFM Dual-specificity RNA methyltransferase RlmN; TrEMBL-Plants: tr|I1KXG4|I1KXG4_SOYBN Uncharacterized protein; Found in the gene: LotjaGi4g1v0165700 LjG1.1_chr4 31386702 31403588 -
2 domain predictions
2 GO terms
LotjaGi4g1v0165700.2
n.a. Dual-specificity RNA methyltransferase RlmN; TAIR: AT1G60230.1 Radical SAM superfamily protein; Swiss-Prot: sp|Q3A2Z4|RLMN_PELCD Dual-specificity RNA methyltransferase RlmN; TrEMBL-Plants: tr|V7C8D7|V7C8D7_PHAVU Uncharacterized protein; Found in the gene: LotjaGi4g1v0165700 LjG1.1_chr4 31387520 31401902 -
2 domain predictions
2 GO terms
LotjaGi5g1v0016300.1
n.a. NADPH--cytochrome P450 reductase; TAIR: AT1G75200.1 flavodoxin family protein / radical SAM domain-containing protein; Swiss-Prot: sp|Q8RXN5|TYW1_ARATH S-adenosyl-L-methionine-dependent tRNA 4-demethylwyosine synthase; TrEMBL-Plants: tr|A0A0R0GAG6|A0A0R0GAG6_SOYBN Uncharacterized protein; Found in the gene: LotjaGi5g1v0016300 LjG1.1_chr5 3194208 3201052 +
3 domain predictions
2 GO terms
LotjaGi5g1v0345100.2
n.a. Lipoyl synthase; TAIR: AT5G08415.1 Radical SAM superfamily protein; Swiss-Prot: sp|B9RX57|LISC_RICCO Lipoyl synthase, chloroplastic; TrEMBL-Plants: tr|A0A0R4J646|A0A0R4J646_SOYBN Lipoyl synthase, chloroplastic; Found in the gene: LotjaGi5g1v0345100 LjG1.1_chr5 66184407 66187106 +
2 domain predictions
2 GO terms
LotjaGi5g1v0345100.3
n.a. Lipoyl synthase; TAIR: AT5G08415.1 Radical SAM superfamily protein; Swiss-Prot: sp|B9RX57|LISC_RICCO Lipoyl synthase, chloroplastic; TrEMBL-Plants: tr|A0A0R4J646|A0A0R4J646_SOYBN Lipoyl synthase, chloroplastic; Found in the gene: LotjaGi5g1v0345100 LjG1.1_chr5 66184432 66187297 +
3 domain predictions
2 GO terms