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Field | Value |
---|---|
Gene ID | LotjaGi5g1v0355300 |
Transcript ID | LotjaGi5g1v0355300.1 |
Related isoforms 1 | |
Lotus japonicus genome version | Gifu v1.2 |
Description | G-patch domain containing protein, expressed; TAIR: AT5G08535.1 D111/G-patch domain-containing protein; Swiss-Prot: sp|Q6C233|SQS1_YARLI Protein SQS1; TrEMBL-Plants: tr|A0A0D6DQF0|A0A0D6DQF0_LUPAN Similar to uncharacterized protein; Found in the gene: LotjaGi5g1v0355300 |
Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr5:67061873..67064114) extracted from Lotus japonicus Gifu genome v1.2.
GTTCCGGGAAATTAAATACCGAAGGGCACTTCTGACATTTTTTTCTAATTAATGGTTGGGGTAAGAATTCCAAATCCCCT TTAATAATTAGTAATTTGAATACAAAAAAGAAAAAACGAGATAGAAGAGAAGAGAAAAGAAGGACGAAGAAAAAACGCGA GAACGTTGTTCCCCTAAACTCGGTTAGCGATGTGTTCCAAATTGATAAATGTTGTGTAGTTCAATTCGTAGCTAGTTTCT TAGTTTTTATTCAGTTTTCGTTGTAAACGTGTAATGGAAAAGGGGGTTTATGGTGAATTTGGGAATTTGAGTGGTTTGAT TTGATTGTATTCTCTTTCTCCAGTGTGCTCAATGGAAGACATGAGTGGTGGTTCAGCAACAGCAACAGCAACAGCAATCA ACTCTTCCAATATAGGGTTTCAGGTACCTCTCTTTCTTTTCCCTGTCATTCCTTTTTTCCTCCTTCTCCTTCATGTAAAT ATAATTGGGCATGTTGTTTTCTGCAGCTATTGAAGAAGCAAGGTTGGAAAGAAGGGACTGGTCTTGGGATATCTGAGCAG GTTTTGTTTCTTACTCTCTTTTCTTCTTCGTGACTTGAAACATTTTCTTACTTTATGTCATTCTTTTTCTTCATCATTTA AATTGAGTAAAGAGGGAAATTAGTTTCAGAATGATATGACATCACTGAATAGAAATTATGTTTGAGGTCTTGGAATGTTT ATTTTGTTGGTGAAATTAGTCCTTATAATCAGCGACCGATTTGACCAAACAAATACATACTCTGACTAATTTAATCAGTG AAATGCTCCTGCTTGTGTACTTGTCTTATTGCCATAATTGTAGTCAATAATCCTGTGTGTGAAATTTTCTTACATTGATT CTGATAAATGACTTCATGATGGAAACAGGGTAGACTAGAACCCGTGGAAACTCGTGTGAAGAATAACAAGCGAGGTTTGG GGGCGGACAAAGTGAAGAAAATGGCCGTGAAGTCTGATGATAGTGATGCCTCTAAAGGGAACAAGCAGCAGGTAACTTTT TGCTCCTAGATCGAATTTTCAAGTTTTATTCCATTCAATTTGATGGGGGAGTTTTAGAAATATGATATAGTTTTCAGTAA TGAGTAAACTCTGATGAATTGAGTAATTAGTTTCTTTAGTGCAACCAAAATATTGGTTATTTGTATCTTTATGTAACATA CTAGTACTATAAAATAATTGGAGTATTCAGTCAGCTTTTGCATCTAACTATTCTCAGTCATTACTAATTAGTAAAATACT GCATTCCCTTTGTCTTGCATCACTCCATCTAGTATCCCCTTTTGTTTTTCAACATTTGTCATTCTGATGGTACTCGGAAT ATATTTTTAGAATTTGTACATTTGAGTTCTACTTAAGTAGTATTTTCTGTAGTTTTTTATTAGTCTCTTCAAAGTAAAAT GAAATGGTAAAAACTACAAAATTAGAAAATTGGAGGAAGGGATAGAAGAACATAATAATTTATTCTCTGAGTAGCAAACT TTGTGTATTGTGCCAGAGTGTAGAATCAGTAGCATAGGATCACACTTACCAGGAACCAGGGTTGTCAATAATGTATTGTA GCGCATATTATCCCTCTCTCTTCTTTAAACAGTATAATATTTCCTGCTTTTCATTGATGTCAATTGATTTCAGGAAAACT CGTCTCAAAAGAAAAAAACCAAAGCACTCTCTAAACGGATGAGAAAGATGCAGGAGTATGAAAAGCAGATGGAGGAGAAG GAATTTGAGCGCGCATTCTTTAGAGAGTTCTGGCCAGAAAATGTGTAAAGGAGAATTTGGCGGTTCGTGTCATTATGTGT ATCAGCATAGTTAGAAAAGGCTGTTGCGAACAGAGAGGATTTCAACATAGCTTCTTTTTCATGTGTAAATAATCAACTCA TTTTCTTTATTCTTTTGTACAACAGAGAAATATGTAATTGCTAAGGGAATGTCAAGGGATGTCATCGCCCAAAAAATGAT TCTTTTACATAATCGTTATCTTGGCCTCCCTGGACAATGTTTTTTGTTTGTGTCATGGTAAAGTTCATTTACAAAGAAAT CCCCTAGAATGTTTGAATATGTTAAAAGACGAGTGAAATGAATTGGAAAATAATGAAAATTTATTTCATCATTTAGATAG CTTATAATGGAATAGGATAAAGTTATATTTGTGGAAGTAGATGAGATCAGTTATAACGTTTTCTTCTTATTTGCCTTTTA TT
CDS sequence (LotjaGi5g1v0355300.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGAAGACATGAGTGGTGGTTCAGCAACAGCAACAGCAACAGCAATCAACTCTTCCAATATAGGGTTTCAGCTATTGAA GAAGCAAGGTTGGAAAGAAGGGACTGGTCTTGGGATATCTGAGCAGGGTAGACTAGAACCCGTGGAAACTCGTGTGAAGA ATAACAAGCGAGGTTTGGGGGCGGACAAAGTGAAGAAAATGGCCGTGAAGTCTGATGATAGTGATGCCTCTAAAGGGAAC AAGCAGCAGGAAAACTCGTCTCAAAAGAAAAAAACCAAAGCACTCTCTAAACGGATGAGAAAGATGCAGGAGTATGAAAA GCAGATGGAGGAGAAGGAATTTGAGCGCGCATTCTTTAGAGAGTTCTGGCCAGAAAATGTGTAA
Protein sequence (LotjaGi5g1v0355300.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MEDMSGGSATATATAINSSNIGFQLLKKQGWKEGTGLGISEQGRLEPVETRVKNNKRGLGADKVKKMAVKSDDSDASKGN KQQENSSQKKKTKALSKRMRKMQEYEKQMEEKEFERAFFREFWPENV
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
---|---|---|---|---|---|---|
PANTHER | 10 | 124 | 115 | 4.2E-44 | ||
SMART | 16 | 62 | 47 | 3.5E-18 | ||
ProSiteProfiles | 18 | 64 | 47 | 16.921 | ||
Pfam | 19 | 61 | 43 | 3.6E-18 | ||
MobiDBLite | 34 | 104 | 71 | - | – | |
MobiDBLite | 46 | 91 | 46 | - | – | |
Coils | 95 | 115 | 21 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
GO term | Namespace | Name | Definition | Relationships |
---|---|---|---|---|
Molecular function | Nucleic acid binding | Interacting selectively and non-covalently with any nucleic acid. |
Expression pattern of LotjaGi5g1v0355300.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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