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TREX

Transcript Explorer
for L. japonicus reference genomes

The Transcript Explorer tool can be used to search for candidate Lotus genes using user-defined keywords, or to comb a specific genomic interval—a combination of chromosome and position range—for genes/transcripts of interest.

Repeat Search

  • IPR000467
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We have found 57 results. Now displaying 1 of 2 with 50 rows per page. This search has taken 5.780s to perform.

Transcript Name Description Chr Start End Strand Domain predictions GO predictions
Lj0g3v0002439.1
n.a. PREDICTED: protein MOS2-like isoform X1 [Cicer arietinum] gi|502123464|ref|XP_004498120.1| chr0 812634 814003 -
3 domain predictions
1 GO term
Lj0g3v0074159.1
n.a. Gag-pro-like protein [Theobroma cacao] gi|508716038|gb|EOY07935.1| chr0 27915819 27918169 -
4 domain predictions
1 GO term
Lj0g3v0130119.1
n.a. PREDICTED: G patch domain-containing protein 8-like [Glycine max] gi|356505733|ref|XP_003521644.1| chr0 58961485 58965145 -
4 domain predictions
1 GO term
Lj0g3v0258109.1
n.a. PREDICTED: protein MOS2-like [Glycine max] gi|356521374|ref|XP_003529331.1| chr0 134036181 134040484 +
3 domain predictions
1 GO term
Lj0g3v0325829.1
n.a. PREDICTED: SURP and G-patch domain-containing protein 1-like protein-like [Glycine max] gi|356557138|ref|XP_003546875.1| chr0 170279573 170286912 +
4 domain predictions
1 GO term
Lj0g3v0327279.1
n.a. Zinc finger CCCH-type with G patch domain-containing protein [Medicago truncatula] gi|357478467|ref|XP_003609519.1| chr0 171099644 171103374 -
4 domain predictions
1 GO term
Lj0g3v0327279.2
n.a. Zinc finger CCCH-type with G patch domain-containing protein [Medicago truncatula] gi|357478467|ref|XP_003609519.1| chr0 171099644 171106480 -
4 domain predictions
1 GO term
Lj0g3v0363599.1
n.a. Zinc finger CCCH-type with G patch domain-containing protein [Medicago truncatula] gi|357478467|ref|XP_003609519.1| chr0 191823002 191835411 +
4 domain predictions
1 GO term
Lj0g3v0363599.2
n.a. zinc finger CCCH domain-containing protein [Arabidopsis thaliana] gi|334182742|ref|NP_173577.2| chr0 191823002 191831132 +
4 domain predictions
1 GO term
Lj1g3v0330950.1
n.a. RNA-binding protein [Medicago truncatula] gi|357461869|ref|XP_003601216.1| chr1 4043004 4048082 +
4 domain predictions
1 GO term
Lj1g3v2155530.1
n.a. PREDICTED: tuftelin-interacting protein 11-like [Glycine max] gi|356559565|ref|XP_003548069.1| chr1 26007925 26013359 -
4 domain predictions
1 GO term
Lj2g3v0440420.1
n.a. Gag-pro-like protein [Theobroma cacao] gi|508775680|gb|EOY22936.1| chr2 6469907 6471985 +
3 domain predictions
1 GO term
Lj2g3v2925120.1
n.a. PREDICTED: DNA-damage-repair/toleration protein DRT111, chloroplastic-like [Glycine max] gi|356521610|ref|XP_003529447.1| chr2 38126022 38129325 +
4 domain predictions
1 GO term
Lj2g3v3317710.1
n.a. PREDICTED: SURP and G-patch domain-containing protein 1-like protein-like isoform X5 [Cicer arietinum] gi|502157971|ref|XP_004510976.1| chr2 41865427 41874667 +
4 domain predictions
1 GO term
Lj2g3v3317710.2
n.a. Os09g0281600 [Oryza sativa Japonica Group] gi|115478346|ref|NP_001062768.1| chr2 41865427 41874667 +
4 domain predictions
1 GO term
Lj3g3v0478110.1
n.a. Os09g0281600 [Oryza sativa Japonica Group] gi|115478346|ref|NP_001062768.1| chr3 5499831 5506050 -
4 domain predictions
1 GO term
Lj3g3v0478110.2
n.a. PREDICTED: SURP and G-patch domain-containing protein 1-like protein-like isoform X5 [Cicer arietinum] gi|502157971|ref|XP_004510976.1| chr3 5499831 5508356 -
4 domain predictions
1 GO term
Lj4g3v0668270.1
n.a. DNA-damage-repair/toleration protein DRT111 [Medicago truncatula] gi|357475093|ref|XP_003607832.1| chr4 10974601 10978580 -
4 domain predictions
1 GO term
Lj4g3v2376320.2
n.a. PREDICTED: coiled-coil domain-containing protein 75-like [Glycine max] gi|356536473|ref|XP_003536762.1| chr4 32958769 32964395 +
4 domain predictions
1 GO term
Lj4g3v2990160.1
n.a. PREDICTED: PIN2/TERF1-interacting telomerase inhibitor 1-like isoform X2 [Cicer arietinum] gi|502139178|ref|XP_004503672.1| chr4 39528669 39532523 +
4 domain predictions
1 GO term
Lj5g3v2263950.1
n.a. PREDICTED: coiled-coil domain-containing protein 75-like [Glycine max] gi|356536473|ref|XP_003536762.1| chr5 33040163 33042027 +
4 domain predictions
1 GO term
Lj6g3v0831440.1
n.a. PREDICTED: zinc finger CCCH domain-containing protein 18-like [Cicer arietinum] gi|502166431|ref|XP_004513890.1| chr6 8410187 8417048 -
4 domain predictions
1 GO term
Lj6g3v0831440.2
n.a. PREDICTED: zinc finger CCCH domain-containing protein 18-like [Glycine max] gi|356567208|ref|XP_003551813.1| chr6 8410187 8417048 -
4 domain predictions
1 GO term
LotjaGi1g1v0078900_LC.1
n.a. Zinc finger CCCH domain protein, putative; TAIR: AT1G21580.1 Zinc finger C-x8-C-x5-C-x3-H type family protein; Swiss-Prot: sp|Q3ED78|C3H7_ARATH Zinc finger CCCH domain-containing protein 7; TrEMBL-Plants: tr|K7LY40|K7LY40_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0078900_LC LjG1.1_chr1 11369076 11377981 -
4 domain predictions
1 GO term
LotjaGi1g1v0176900.1
n.a. D111/G-patch domain protein; TAIR: AT4G34140.1 D111/G-patch domain-containing protein; Swiss-Prot: sp|Q99KG3|RBM10_MOUSE RNA-binding protein 10; TrEMBL-Plants: tr|I1JXA4|I1JXA4_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0176900 LjG1.1_chr1 33943876 33954422 +
4 domain predictions
1 GO term
LotjaGi1g1v0427300.1
n.a. Tuftelin interacting protein 11 domain containing protein; TAIR: AT1G17070.1 GC-rich sequence DNA-binding factor-like protein with Tuftelin interacting domain-containing protein; Swiss-Prot: sp|Q9SHG6|STIP1_ARATH Septin and tuftelin-interacting protein 1 homolog 1; TrEMBL-Plants: tr|A0A0B2RLS8|A0A0B2RLS8_GLYSO Tuftelin-interacting protein 11; Found in the gene: LotjaGi1g1v0427300 LjG1.1_chr1 92133944 92139465 -
4 domain predictions
1 GO term
LotjaGi1g1v0427300.2
n.a. Tuftelin interacting protein 11 domain containing protein; TAIR: AT1G17070.1 GC-rich sequence DNA-binding factor-like protein with Tuftelin interacting domain-containing protein; Swiss-Prot: sp|Q9SHG6|STIP1_ARATH Septin and tuftelin-interacting protein 1 homolog 1; TrEMBL-Plants: tr|A0A0B2RLS8|A0A0B2RLS8_GLYSO Tuftelin-interacting protein 11; Found in the gene: LotjaGi1g1v0427300 LjG1.1_chr1 92134148 92139247 -
4 domain predictions
1 GO term
LotjaGi1g1v0427300.3
n.a. Tuftelin interacting protein 11 domain containing protein; TAIR: AT1G17070.1 GC-rich sequence DNA-binding factor-like protein with Tuftelin interacting domain-containing protein; Swiss-Prot: sp|Q9SHG6|STIP1_ARATH Septin and tuftelin-interacting protein 1 homolog 1; TrEMBL-Plants: tr|A0A0B2RLS8|A0A0B2RLS8_GLYSO Tuftelin-interacting protein 11; Found in the gene: LotjaGi1g1v0427300 LjG1.1_chr1 92134173 92139377 -
4 domain predictions
1 GO term
LotjaGi1g1v0751700.1
n.a. G-patch domain-containing protein; TAIR: AT5G26610.1 D111/G-patch domain-containing protein; Swiss-Prot: sp|A2A6A1|GPTC8_MOUSE G patch domain-containing protein 8; TrEMBL-Plants: tr|I3T461|I3T461_LOTJA Uncharacterized protein; Found in the gene: LotjaGi1g1v0751700 LjG1.1_chr1 132389551 132393898 -
4 domain predictions
1 GO term
LotjaGi1g1v0751700.2
n.a. G-patch domain-containing protein; TAIR: AT5G26610.1 D111/G-patch domain-containing protein; Swiss-Prot: sp|Q9UKJ3|GPTC8_HUMAN G patch domain-containing protein 8; TrEMBL-Plants: tr|I3T461|I3T461_LOTJA Uncharacterized protein; Found in the gene: LotjaGi1g1v0751700 LjG1.1_chr1 132389551 132393898 -
4 domain predictions
1 GO term
LotjaGi2g1v0021800.1
n.a. G-patch domain-containing protein; TAIR: AT1G33520.1 D111/G-patch domain-containing protein; Swiss-Prot: sp|Q9C801|MOS2_ARATH Protein MOS2; TrEMBL-Plants: tr|K7L2Q5|K7L2Q5_SOYBN Uncharacterized protein; Found in the gene: LotjaGi2g1v0021800 LjG1.1_chr2 7707378 7713898 -
3 domain predictions
1 GO term
LotjaGi2g1v0021800.2
n.a. G-patch domain-containing protein; TAIR: AT1G33520.1 D111/G-patch domain-containing protein; Swiss-Prot: sp|Q9C801|MOS2_ARATH Protein MOS2; TrEMBL-Plants: tr|K7L2Q5|K7L2Q5_SOYBN Uncharacterized protein; Found in the gene: LotjaGi2g1v0021800 LjG1.1_chr2 7707378 7715116 -
3 domain predictions
1 GO term
LotjaGi2g1v0021800.3
n.a. G-patch domain-containing protein; TAIR: AT1G33520.1 D111/G-patch domain-containing protein; Swiss-Prot: sp|Q9C801|MOS2_ARATH Protein MOS2; TrEMBL-Plants: tr|K7L2Q5|K7L2Q5_SOYBN Uncharacterized protein; Found in the gene: LotjaGi2g1v0021800 LjG1.1_chr2 7707821 7713769 -
3 domain predictions
1 GO term
LotjaGi3g1v0059200.2
n.a. G-patch domain-containing protein; TAIR: AT3G52120.1 SWAP (Suppressor-of-White-APricot)/surp domain-containing protein / D111/G-patch domain-containing protein; Swiss-Prot: sp|Q94C11|SUGP1_ARATH SURP and G-patch domain-containing protein 1-like protein; TrEMBL-Plants: tr|V7BWV7|V7BWV7_PHAVU Uncharacterized protein; Found in the gene: LotjaGi3g1v0059200 LjG1.1_chr3 6218684 6228301 -
4 domain predictions
1 GO term
LotjaGi3g1v0059200.3
n.a. G-patch domain-containing protein; TAIR: AT3G52120.1 SWAP (Suppressor-of-White-APricot)/surp domain-containing protein / D111/G-patch domain-containing protein; Swiss-Prot: sp|Q94C11|SUGP1_ARATH SURP and G-patch domain-containing protein 1-like protein; TrEMBL-Plants: tr|V7BWV7|V7BWV7_PHAVU Uncharacterized protein; Found in the gene: LotjaGi3g1v0059200 LjG1.1_chr3 6219332 6228102 -
4 domain predictions
1 GO term
LotjaGi3g1v0059200.5
n.a. G-patch domain-containing protein; TAIR: AT3G52120.1 SWAP (Suppressor-of-White-APricot)/surp domain-containing protein / D111/G-patch domain-containing protein; Swiss-Prot: sp|Q94C11|SUGP1_ARATH SURP and G-patch domain-containing protein 1-like protein; TrEMBL-Plants: tr|V7BWV7|V7BWV7_PHAVU Uncharacterized protein; Found in the gene: LotjaGi3g1v0059200 LjG1.1_chr3 6219425 6227996 -
4 domain predictions
1 GO term
LotjaGi3g1v0124100.1
n.a. G-patch domain-containing protein; TAIR: AT3G52120.1 SWAP (Suppressor-of-White-APricot)/surp domain-containing protein / D111/G-patch domain-containing protein; Swiss-Prot: sp|Q94C11|SUGP1_ARATH SURP and G-patch domain-containing protein 1-like protein; TrEMBL-Plants: tr|A0A0S3SJH4|A0A0S3SJH4_PHAAN Uncharacterized protein; Found in the gene: LotjaGi3g1v0124100 LjG1.1_chr3 15156214 15164068 +
4 domain predictions
1 GO term
LotjaGi3g1v0124100.2
n.a. G-patch domain-containing protein; TAIR: AT3G52120.1 SWAP (Suppressor-of-White-APricot)/surp domain-containing protein / D111/G-patch domain-containing protein; Swiss-Prot: sp|Q94C11|SUGP1_ARATH SURP and G-patch domain-containing protein 1-like protein; TrEMBL-Plants: tr|A0A0S3SJH4|A0A0S3SJH4_PHAAN Uncharacterized protein; Found in the gene: LotjaGi3g1v0124100 LjG1.1_chr3 15156376 15163693 +
4 domain predictions
1 GO term
LotjaGi3g1v0547500.1
n.a. Gag-pro; TAIR: AT3G57910.1 D111/G-patch domain-containing protein; Swiss-Prot: sp|Q6GQ76|CMTR1_XENLA Cap-specific mRNA (nucleoside-2'-O-)-methyltransferase 1; TrEMBL-Plants: tr|A0A061EXR3|A0A061EXR3_THECC Uncharacterized protein; Found in the gene: LotjaGi3g1v0547500 LjG1.1_chr3 96418037 96429828 -
4 domain predictions
1 GO term
LotjaGi4g1v0086400.1
n.a. Splicing factor; TAIR: AT1G30480.1 D111/G-patch domain-containing protein; Swiss-Prot: sp|P42698|DR111_ARATH DNA-damage-repair/toleration protein DRT111, chloroplastic; TrEMBL-Plants: tr|V7CI72|V7CI72_PHAVU Uncharacterized protein; Found in the gene: LotjaGi4g1v0086400 LjG1.1_chr4 11392781 11397125 -
4 domain predictions
1 GO term
LotjaGi4g1v0147400.1
n.a. RNA-binding protein, putative; TAIR: AT3G54230.2 suppressor of abi3-5; Swiss-Prot: sp|F4JCU0|SUA_ARATH SUPPRESSOR OF ABI3-5; TrEMBL-Plants: tr|A0A072U387|A0A072U387_MEDTR RNA-binding protein, putative; Found in the gene: LotjaGi4g1v0147400 LjG1.1_chr4 23934405 23943673 -
4 domain predictions
1 GO term
LotjaGi4g1v0147400.3
n.a. RNA-binding protein, putative; TAIR: AT3G54230.2 suppressor of abi3-5; Swiss-Prot: sp|F4JCU0|SUA_ARATH SUPPRESSOR OF ABI3-5; TrEMBL-Plants: tr|A0A072U387|A0A072U387_MEDTR RNA-binding protein, putative; Found in the gene: LotjaGi4g1v0147400 LjG1.1_chr4 23935085 23942746 -
4 domain predictions
1 GO term
LotjaGi4g1v0147400.4
n.a. RNA-binding protein, putative; TAIR: AT3G54230.2 suppressor of abi3-5; Swiss-Prot: sp|F4JCU0|SUA_ARATH SUPPRESSOR OF ABI3-5; TrEMBL-Plants: tr|A0A072U387|A0A072U387_MEDTR RNA-binding protein, putative; Found in the gene: LotjaGi4g1v0147400 LjG1.1_chr4 23935321 23942652 -
4 domain predictions
1 GO term
LotjaGi4g1v0147400.5
n.a. RNA-binding protein, putative; TAIR: AT3G54230.2 suppressor of abi3-5; Swiss-Prot: sp|F4JCU0|SUA_ARATH SUPPRESSOR OF ABI3-5; TrEMBL-Plants: tr|A0A072TS81|A0A072TS81_MEDTR RNA-binding protein, putative; Found in the gene: LotjaGi4g1v0147400 LjG1.1_chr4 23935321 23942733 -
4 domain predictions
1 GO term
LotjaGi4g1v0164000_LC.1
n.a. G-patch domain-containing protein; TAIR: AT1G63980.1 D111/G-patch domain-containing protein; Swiss-Prot: sp|Q6GQ76|CMTR1_XENLA Cap-specific mRNA (nucleoside-2'-O-)-methyltransferase 1; TrEMBL-Plants: tr|A0A151R2D5|A0A151R2D5_CAJCA Uncharacterized protein; Found in the gene: LotjaGi4g1v0164000_LC LjG1.1_chr4 30857190 30860992 -
4 domain predictions
1 GO term
LotjaGi4g1v0282900.1
n.a. Zinc finger family protein / D111/G-patch domain-containing protein; TAIR: AT3G09850.1 D111/G-patch domain-containing protein; Swiss-Prot: sp|Q9UTK6|YKR3_SCHPO G-patch domain-containing protein C1486.03; TrEMBL-Plants: tr|I1LZN2|I1LZN2_SOYBN Uncharacterized protein; Found in the gene: LotjaGi4g1v0282900 LjG1.1_chr4 65483473 65491183 +
4 domain predictions
1 GO term
LotjaGi4g1v0349100_LC.2
n.a. Pyruvate dehydrogenase E1 component subunit beta; TAIR: AT3G52350.1 D111/G-patch domain-containing protein; Swiss-Prot: sp|P52904|ODPB_PEA Pyruvate dehydrogenase E1 component subunit beta, mitochondrial; TrEMBL-Plants: tr|A0A0D6DQF0|A0A0D6DQF0_LUPAN Similar to uncharacterized protein; Found in the gene: LotjaGi4g1v0349100_LC LjG1.1_chr4 72793123 72801247 -
4 domain predictions
1 GO term
LotjaGi4g1v0430200.1
n.a. D111/G-patch domain protein; TAIR: AT1G63980.2 D111/G-patch domain-containing protein; Swiss-Prot: sp|Q96BK5|PINX1_HUMAN PIN2/TERF1-interacting telomerase inhibitor 1; TrEMBL-Plants: tr|I1K6E1|I1K6E1_SOYBN Uncharacterized protein; Found in the gene: LotjaGi4g1v0430200 LjG1.1_chr4 80439864 80444256 +
4 domain predictions
1 GO term
LotjaGi5g1v0141800_LC.1
n.a. Pyruvate dehydrogenase E1 component subunit beta; TAIR: AT3G52350.1 D111/G-patch domain-containing protein; Swiss-Prot: sp|P52904|ODPB_PEA Pyruvate dehydrogenase E1 component subunit beta, mitochondrial; TrEMBL-Plants: tr|A0A0D6DQF0|A0A0D6DQF0_LUPAN Similar to uncharacterized protein; Found in the gene: LotjaGi5g1v0141800_LC LjG1.1_chr5 35197711 35206032 +
4 domain predictions
1 GO term
LotjaGi5g1v0141800_LC.2
n.a. Pyruvate dehydrogenase E1 component subunit beta; TAIR: AT3G52350.1 D111/G-patch domain-containing protein; Swiss-Prot: sp|P52904|ODPB_PEA Pyruvate dehydrogenase E1 component subunit beta, mitochondrial; TrEMBL-Plants: tr|A0A0D6DQF0|A0A0D6DQF0_LUPAN Similar to uncharacterized protein; Found in the gene: LotjaGi5g1v0141800_LC LjG1.1_chr5 35197712 35204836 +
4 domain predictions
1 GO term