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| Field | Value |
|---|---|
| Gene ID | LotjaGi5g1v0366000 |
| Transcript ID | LotjaGi5g1v0366000.1 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Peptidyl-prolyl cis-trans isomerase; TAIR: AT5G13120.1 cyclophilin 20-2; Swiss-Prot: sp|Q9ASS6|PNSL5_ARATH Photosynthetic NDH subunit of lumenal location 5, chloroplastic; TrEMBL-Plants: tr|M5XGJ2|M5XGJ2_PRUPE Peptidyl-prolyl cis-trans isomerase; Found in the gene: LotjaGi5g1v0366000 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr5:68072298..68076130) extracted from Lotus japonicus Gifu genome v1.2.
CGTTATATATTTTTTTCTCTTAATCCCAGCAACTTGAAATTCATCTCATAATTTTGGTTTATATTGTTTCATATTTTGTT TCTCTTTATACTATTATTTTCTCCTCCCATTTTCAAAACAAAACATAAAGTAATTGGATAGTTAATCCAAACAGATAGGG CAGTGCAAGGCCGGGCTGATAGAGCATCCTCGATAATATCTATCTATCTATCAATCCATTCATCCATCCATCCAGAGCAC TGGAGCGGAGGAGTGGGGTGGGTGTTGACGGACGATGGCAATGGCGGCTGCAACAACAGCACTATTATCACTGGTAGGTA ATTAGTTTTTTGAAATGAATCTTCGATACTGATGATTGATGACTGTGTCTTTGTTTTGAATGGTCAGTTAAATGTTCCAG AAAGAGACGGAATCAGCAGAGCTTTGAACCCTAACATTCAGTTCGTAGGGTTTGGTAGGCGCGTGAAGATGATGAATGTT TGTTGTCCTGCTGCTCCTCCTGCATTAACAAAAACAAGAGCGGATTCGGTAGTAGTGAGGGCCAGTGGTAGTGGTGGTTT TTCTTCAGAATCAGAGGAAGCAGCAGGAGCTGGTCTACAGTCAAAAGTGACTCACAAAGTATACTTTGATATCAGTATTG GAAACCCAGTTGGGAAGCTTGCTGGAAGGATTGTCATTGGACTCTTCGGTGACGATGTGCCCCAAACTGCTGAGAACTTC CGTGCCCTTTGTACCGGTAAGAAGGGCTTTGGTTACAAGGGCTCCACCTTCCATCGTGTCATCAAGGATTTCATGATTCA AGGAGGAGACTTTGACAAAGGAAATGGAACTGGAGGCAAAAGTATATATGGCCGTACTTTTAAAGATGAGAATTTTAAAT GTATGTATGTCACTTTATTTATTTATTTATTTATTTTGCTTCTTTTAATTTAACTAAACTCACCGCCTAATTTAGTTTAA GTCCTAGTTATTGCAAATATACTACTGATATCAATATGTATAATGTCTCTCTCTAGTGTCTCATACTGGACCTGGAGTTG TTAGCATGGCAAATGCAGGTCCAAACACAAACGGGAGCCAGTTTTTCATTTGCACTGTCAAGGTATATTTCTCTTCTTAA CTACTTCTTTTAGTCCATGCTTTTTCTGGTTGATTATGAAATAAATATGCTATATTCCTAACTAAATGTCTGTTTCAACT CTTAAGGTTCCTGGCTTCCTGCCTATGAAAATGACATACATTTTCGTTATGCTACTGGTATCAACTGTCTTTTCTCTATG CAGGTTAAATAAGCCTGATTTTCAGTGTTAGCTGACATTTGCACATTTTTCTCTACACTTACAAAGATCATTGATTTCAT ACTCAGATGTGAAAGTCTCATATTTAAAAAACAGCACTTTTTAATTTAGATTGTAATTAGATTACCACATTATTCCTACA CTGAGTCACTGAGATTGATTAGTGTTTATGATGACAAGTTAAAACCTCTTAGTATCTAGTGAACTAAGGGGAATTTGTTT ATAATCCTTGGTTTTGACCTAATAAACATGTCTGATGAATTGACAGACACCATGGCTGGATCAGAGGCATGTTGTATTTG GCCAAGTTTTGGAAGGCATCGACATTGTTAGGTTGATTGAGTCACAGGAAACAGATCGTGGTGACCGTCCTAGAAAGAGA GTGGTTATCATTGACTCTGGTGAGCTTCCAATTGCTTAAAGTTGTTCTCATGTATTTTTTGGGTCCTGACTTCTAGTGTT TCTTCCTATTGAGGAGGGGGGTATACGCAACTCCTGCTTTCTGGAATTTTTTGTTTGACTATTCCAAGACGAGTTCTGTC CATTTTCTTTTCATACTGAACCTATAAACTTTAAGCATCTATTGTATTCTAGTAGCATTATAGTTTGAGTTGGTGCCAGC TTGAATCTGAATGGTATCATTTGGCTAAAGAGTTGTTTTTGTGTGGAATTTAATGGTGAAGGAATTCCAGGAGTCTTTTA CAAATTTAATAATAAAATATTGAGTATCATTGCAATTGAATTGTCTTAGACTTTCTCTGCGCAATTCTAGCGTATCATTA ATCAAATTTCATTTTTTAGCCTGTGAAGAATGTCATTTTATGTTTTCAAATTAAAGAGTTCTTACTCTTTCTGAGGATAT CCTGTCAATTTTTTTTTCAAGGTGATACCCATTTAGATAGATTGATTTTTAAATTTGAAAGCATCTAGCTAAATTAGCAC TTGCTGCAGCCTGTAAGATTGGAGTGTGATGCTGATGTTAGGTTCATCTATGACCTACTCATCGGTCTCGTATACTCCTC TTCCTACCTAGTGCTTGCACTTGCAACTCTGTCCCCCTGCCCCAAAAATACTGAAATTTAGAACTTCATATGTTTGTTAT CCTATTTTTACAGTTGATGCATGCTTTGTCTATGGAAAAATGCTGTATAGAGTTAAAAAATAGTAATGTTCTAAATTGTA ACTTTCTCACGGTACATTCTTACTTCTATTCTATCCAATGTCTCCTATAATTTTCATTGTACATATTAAATATTTAGAGC ACCTAATGGATCATAGTAGCTTGTGAAAATTCATCGTCGTTTATGGAATCAGGTTGTATTAAATTGTTCCCAGAGACCTT CTAATAAAAGGGATTTTATTGTTAGAAATGCTGGTGTGTGCTCGAGCGTTGGGTCCTTTGGATGATTGAATGATGAGTCG CTTGTAAGTTTCACTTAAAAAAATATTACAGTGAAGGCTTGATGATCAAGCTTCACTTACGTATAAATAGTTACAATTAC AAGTTACAACTGTTTCGTTGTTCATTCAAATCACTACCTCTGTTTCACATTATTTCTTATGCTAATGGATTGGAAGAAAG CACTGCTGATTGTGGAGATTGATCAGGTAAAGAAGATTGTGGTGAAGGCTGATAAATTGAAATGGGAATACGAGTATTAG ATGCAGGGCAGTCAATAAGGGGTGATACAGAACTGCTATGAGATGTGGCCTGTGGGTAAAGGAAACATGGGAAAGACATC CCTGTTGTGATCACAATTAGTTCCAAAGAAAAGAAATACATTCTCATAAAAAACTACATGCCTTGAAAGAAAAATCTCCC TGGTATGAGGATCAAGGGTAAGATATCCCTTAATGCCCTCTTTGATCCCCAAAACAACTCACTTCCTAGCCCTTGGCTGA AACTCTATCCTTTGAGCTGTGTTTGTAGTAGCATAACATAAGGAACCCAAAATTCTAAGAGAATGGATCTCAGGATTTTT ATCATGAAGGGTAGAATAGGGTGAGAGTGAATGAAGTTTCTTGGATGGTAGAATATTAATGAGGTGGATAACATGAATGA TAGCATAAGACCAAAAATGAACTGGCAAATGATAATGAAACATGATAGACCTAGCTATCTTTAAAATGTGTCGGTGTTTT CTCTCAACCACCTGATTCTGTTAAGGGGTGGTTTCAACACAAGAAAGTTGGTGAAGAATATCGTTTGGGTGATAAAAATC AGTCATTACAAATTCTAAACCATTGTATGATCTTCTGGCTTTTGTTTGGAGGTGAAATTGTGTTTGAATGAAACCCAAAT TTGTTCTTCATTTGAAGAGACATTGTCATTACACAAGCCCAGTCATGCTAATTGGGACCTTCGAGAACAGGTATGATTTG AATCAAAGAAGGATTTTCATGAATGTAGTAATCATGAGAAGAACAATGATGAGGAAGAACAGGCGTAGAGGAGACACTAC AGTAGTGGGCATACTTGGCATAGTATGGCGGAGGATGCCATGGAAGAAAGAGAACATCTCCAGGAAAGAGAAG
CDS sequence (LotjaGi5g1v0366000.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCAATGGCGGCTGCAACAACAGCACTATTATCACTGTTAAATGTTCCAGAAAGAGACGGAATCAGCAGAGCTTTGAA CCCTAACATTCAGTTCGTAGGGTTTGGTAGGCGCGTGAAGATGATGAATGTTTGTTGTCCTGCTGCTCCTCCTGCATTAA CAAAAACAAGAGCGGATTCGGTAGTAGTGAGGGCCAGTGGTAGTGGTGGTTTTTCTTCAGAATCAGAGGAAGCAGCAGGA GCTGGTCTACAGTCAAAAGTGACTCACAAAGTATACTTTGATATCAGTATTGGAAACCCAGTTGGGAAGCTTGCTGGAAG GATTGTCATTGGACTCTTCGGTGACGATGTGCCCCAAACTGCTGAGAACTTCCGTGCCCTTTGTACCGGTAAGAAGGGCT TTGGTTACAAGGGCTCCACCTTCCATCGTGTCATCAAGGATTTCATGATTCAAGGAGGAGACTTTGACAAAGGAAATGGA ACTGGAGGCAAAAGTATATATGGCCGTACTTTTAAAGATGAGAATTTTAAATTGTCTCATACTGGACCTGGAGTTGTTAG CATGGCAAATGCAGGTCCAAACACAAACGGGAGCCAGTTTTTCATTTGCACTGTCAAGACACCATGGCTGGATCAGAGGC ATGTTGTATTTGGCCAAGTTTTGGAAGGCATCGACATTGTTAGGTTGATTGAGTCACAGGAAACAGATCGTGGTGACCGT CCTAGAAAGAGAGTGGTTATCATTGACTCTGGTGAGCTTCCAATTGCTTAA
Protein sequence (LotjaGi5g1v0366000.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MAMAAATTALLSLLNVPERDGISRALNPNIQFVGFGRRVKMMNVCCPAAPPALTKTRADSVVVRASGSGGFSSESEEAAG AGLQSKVTHKVYFDISIGNPVGKLAGRIVIGLFGDDVPQTAENFRALCTGKKGFGYKGSTFHRVIKDFMIQGGDFDKGNG TGGKSIYGRTFKDENFKLSHTGPGVVSMANAGPNTNGSQFFICTVKTPWLDQRHVVFGQVLEGIDIVRLIESQETDRGDR PRKRVVIIDSGELPIA
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 19 | 19 | - | – | |
| Phobius | 1 | 3 | 3 | - | – | |
| Phobius | 4 | 14 | 11 | - | – | |
| Phobius | 15 | 19 | 5 | - | – | |
| Phobius | 20 | 256 | 237 | - | – | |
| PANTHER | 72 | 253 | 182 | 3.3E-97 | – | |
| PANTHER | 72 | 253 | 182 | 3.3E-97 | – | |
| Gene3D | 76 | 256 | 181 | 2.9E-82 | ||
| SUPERFAMILY | 85 | 253 | 169 | 1.46E-71 | ||
| CDD | 89 | 251 | 163 | 1.79499E-104 | – | |
| ProSiteProfiles | 102 | 252 | 151 | 43.571 | ||
| Pfam | 103 | 249 | 147 | 6.0E-50 | ||
| PRINTS | 112 | 127 | 16 | 1.1E-38 | ||
| ProSitePatterns | 136 | 153 | 18 | - | ||
| PRINTS | 141 | 153 | 13 | 1.1E-38 | ||
| PRINTS | 184 | 199 | 16 | 1.1E-38 | ||
| PRINTS | 199 | 211 | 13 | 1.1E-38 | ||
| PRINTS | 212 | 227 | 16 | 1.1E-38 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Biological process | Protein peptidyl-prolyl isomerization | The modification of a protein by cis-trans isomerization of a proline residue. | ||
| Molecular function | Peptidyl-prolyl cis-trans isomerase activity | Catalysis of the reaction: peptidyl-proline (omega=180) = peptidyl-proline (omega=0). | ||
| Biological process | Protein folding | The process of assisting in the covalent and noncovalent assembly of single chain polypeptides or multisubunit complexes into the correct tertiary structure. |
Expression pattern of LotjaGi5g1v0366000.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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