Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message

TREX

Transcript Explorer
for L. japonicus reference genomes

The Transcript Explorer tool can be used to search for candidate Lotus genes using user-defined keywords, or to comb a specific genomic interval—a combination of chromosome and position range—for genes/transcripts of interest.

Repeat Search

  • IPR029000
Separate each keyword, or gene/transcript ID, with a comma or tab. Spaces are not accepted as delimiters due to their potential use in boolean searches.
or

Export options

Download the entire search result as a CSV file.

We have found 70 results. Now displaying 1 of 2 with 50 rows per page. This search has taken 5.628s to perform.

Transcript Name Description Chr Start End Strand Domain predictions GO predictions
Lj0g3v0018479.1
n.a. PREDICTED: peptidyl-prolyl cis-trans isomerase CYP20-1-like [Cicer arietinum] gi|502129296|ref|XP_004500254.1| chr0 7244928 7246442 -
3 domain predictions
 –
Lj0g3v0018489.1
n.a. PREDICTED: peptidyl-prolyl cis-trans isomerase CYP20-1-like [Cicer arietinum] gi|502129296|ref|XP_004500254.1| chr0 7245184 7246442 -
3 domain predictions
 –
Lj0g3v0212469.1
n.a. PREDICTED: peptidyl-prolyl cis-trans isomerase CYP40-like [Glycine max] gi|356511742|ref|XP_003524582.1| chr0 107221596 107225718 -
3 domain predictions
 –
Lj0g3v0215839.1
n.a. PREDICTED: peptidyl-prolyl cis-trans isomerase CYP37, chloroplastic-like isoform X1 [Cicer arietinum] gi|502168275|ref|XP_004514351.1| chr0 109470499 109474812 +
3 domain predictions
 –
Lj0g3v0254699.1
n.a. PREDICTED: peptidyl-prolyl cis-trans isomerase CWC27 homolog [Cicer arietinum] gi|502079117|ref|XP_004486160.1| chr0 132237057 132245885 -
3 domain predictions
 –
Lj0g3v0254699.2
n.a. PREDICTED: peptidyl-prolyl cis-trans isomerase CWC27 homolog [Cicer arietinum] gi|502079117|ref|XP_004486160.1| chr0 132237784 132245885 -
3 domain predictions
 –
Lj0g3v0286639.1
n.a. PREDICTED: peptidyl-prolyl cis-trans isomerase-like 4-like isoform X1 [Cicer arietinum] gi|502124034|ref|XP_004498355.1| chr0 148910402 148919746 +
3 domain predictions
 –
Lj0g3v0312029.1
n.a. PREDICTED: peptidyl-prolyl cis-trans isomerase-like 4-like isoform X2 [Cicer arietinum] gi|502124036|ref|XP_004498356.1| chr0 162867714 162875276 +
3 domain predictions
 –
Lj0g3v0347429.1
n.a. Peptidyl-prolyl cis-trans isomerase [Medicago truncatula] gi|357461217|ref|XP_003600890.1| chr0 182307308 182310821 -
3 domain predictions
 –
Lj1g3v1384110.1
n.a. PREDICTED: peptidyl-prolyl cis-trans isomerase CYP40-like [Glycine max] gi|356521481|ref|XP_003529384.1| chr1 16802248 16806591 -
3 domain predictions
 –
Lj1g3v1912840.1
n.a. PREDICTED: serine/arginine repetitive matrix protein 2-like isoform X2 [Cicer arietinum] gi|502124749|ref|XP_004498656.1| chr1 22717588 22722544 -
3 domain predictions
 –
Lj1g3v2898440.1
n.a. Peptidyl-prolyl cis-trans isomerase, cyclophilin type [Medicago truncatula] gi|124359489|gb|ABN05927.1| chr1 32712188 32717814 -
3 domain predictions
 –
Lj1g3v3343880.1
n.a. PREDICTED: peptidyl-prolyl cis-trans isomerase-like [Cicer arietinum] gi|502130706|ref|XP_004500742.1| chr1 38315871 38316894 -
3 domain predictions
 –
Lj1g3v4719660.1
n.a. PREDICTED: peptidyl-prolyl cis-trans isomerase-like 1-like [Cicer arietinum] gi|502111994|ref|XP_004494215.1| chr1 56367134 56369430 -
3 domain predictions
 –
Lj1g3v4719660.2
n.a. PREDICTED: peptidyl-prolyl cis-trans isomerase-like 1-like [Cicer arietinum] gi|502111994|ref|XP_004494215.1| chr1 56367134 56372311 -
3 domain predictions
 –
Lj1g3v4820020.1
n.a. PREDICTED: LOW QUALITY PROTEIN: peptidyl-prolyl cis-trans isomerase, chloroplastic-like [Glycine max] gi|356505701|ref|XP_003521628.1| chr1 58202440 58205242 +
3 domain predictions
 –
Lj2g3v1014320.2
n.a. PREDICTED: peptidyl-prolyl cis-trans isomerase CYP38, chloroplastic-like [Glycine max] gi|356571435|ref|XP_003553882.1| chr2 15531600 15536612 -
3 domain predictions
 –
Lj2g3v1296290.1
n.a. PREDICTED: probable peptidyl-prolyl cis-trans isomerase-like isoform X2 [Cicer arietinum] gi|502093698|ref|XP_004490023.1| chr2 20760563 20766607 +
3 domain predictions
 –
Lj2g3v1968380.1
n.a. PREDICTED: peptidyl-prolyl cis-trans isomerase-like 2-like isoform X3 [Cicer arietinum] gi|502160668|ref|XP_004511839.1| chr2 28672353 28676241 +
3 domain predictions
 –
Lj2g3v1988920.2
n.a. Peptidyl-prolyl cis-trans isomerases isoform 1 [Theobroma cacao] gi|508776905|gb|EOY24161.1| chr2 29649320 29657317 +
3 domain predictions
 –
Lj2g3v2613050.1
n.a. cyclophilin [Ziziphus jujuba] gi|196166898|gb|ACG70968.1| chr2 35599277 35599480 -
3 domain predictions
 –
Lj3g3v1145930.1
n.a. PREDICTED: peptidylprolyl isomerase domain and WD repeat-containing protein 1-like isoform X2 [Cicer arietinum] gi|502083631|ref|XP_004487517.1| chr3 15519682 15526218 -
3 domain predictions
 –
Lj3g3v1906510.1
n.a. PREDICTED: peptidyl-prolyl cis-trans isomerase H-like [Cicer arietinum] gi|502158162|ref|XP_004511051.1| chr3 24456923 24461522 +
3 domain predictions
 –
Lj3g3v1906510.2
n.a. Peptidyl-prolyl cis-trans isomerase [Medicago truncatula] gi|357515287|ref|XP_003627932.1| chr3 24457662 24461522 +
3 domain predictions
 –
Lj3g3v2723670.1
n.a. Peptidyl-prolyl cis-trans isomerase [Medicago truncatula] gi|358344345|ref|XP_003636250.1| chr3 33514853 33517521 +
3 domain predictions
 –
Lj3g3v3527420.1
n.a. PREDICTED: peptidyl-prolyl cis-trans isomerase 1-like [Glycine max] gi|356507991|ref|XP_003522746.1| chr3 43103043 43103984 -
3 domain predictions
 –
Lj3g3v3527430.1
n.a. PREDICTED: peptidyl-prolyl cis-trans isomerase isoform 1 [Vitis vinifera] gi|225457957|ref|XP_002274869.1| chr3 43106243 43107217 -
3 domain predictions
 –
Lj4g3v1784850.1
n.a. PREDICTED: peptidyl-prolyl cis-trans isomerase B-like [Glycine max] gi|356563117|ref|XP_003549812.1| chr4 25214791 25223573 -
3 domain predictions
 –
Lj5g3v1793380.1
n.a. PREDICTED: peptidyl-prolyl cis-trans isomerase CYP21-3, mitochondrial-like isoform X1 [Cicer arietinum] gi|502118339|ref|XP_004496218.1| chr5 25485069 25491103 +
3 domain predictions
 –
Lj6g3v1088970.1
n.a. PREDICTED: peptidyl-prolyl cis-trans isomerase B-like [Glycine max] gi|356556583|ref|XP_003546604.1| chr6 13168874 13170422 -
3 domain predictions
 –
LotjaGi1g1v0329100.1
n.a. Peptidyl-prolyl cis-trans isomerase; TAIR: AT2G15790.1 peptidyl-prolyl cis-trans isomerase / cyclophilin-40 (CYP40) / rotamase; Swiss-Prot: sp|Q9C566|CYP40_ARATH Peptidyl-prolyl cis-trans isomerase CYP40; TrEMBL-Plants: tr|I3SXT9|I3SXT9_LOTJA Uncharacterized protein; Found in the gene: LotjaGi1g1v0329100 LjG1.1_chr1 78423081 78428115 -
3 domain predictions
 –
LotjaGi1g1v0329100.2
n.a. Peptidyl-prolyl cis-trans isomerase; TAIR: AT2G15790.1 peptidyl-prolyl cis-trans isomerase / cyclophilin-40 (CYP40) / rotamase; Swiss-Prot: sp|Q9C566|CYP40_ARATH Peptidyl-prolyl cis-trans isomerase CYP40; TrEMBL-Plants: tr|I3SXT9|I3SXT9_LOTJA Uncharacterized protein; Found in the gene: LotjaGi1g1v0329100 LjG1.1_chr1 78424411 78427837 -
3 domain predictions
 –
LotjaGi1g1v0386100.1
n.a. Peptidyl-prolyl cis-trans isomerase; TAIR: AT4G32420.4 Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein; Swiss-Prot: sp|Q8RWY7|CYP95_ARATH Peptidyl-prolyl cis-trans isomerase CYP95; TrEMBL-Plants: tr|A0A0R0GCC6|A0A0R0GCC6_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0386100 LjG1.1_chr1 86948633 86956017 -
3 domain predictions
 –
LotjaGi1g1v0492400.1
n.a. Peptidyl-prolyl cis-trans isomerase; TAIR: AT4G17070.1 peptidyl-prolyl cis-trans isomerase; Swiss-Prot: sp|Q5ZLV2|PPIL3_CHICK Peptidyl-prolyl cis-trans isomerase-like 3; TrEMBL-Plants: tr|A0A1J7GE52|A0A1J7GE52_LUPAN Uncharacterized protein; Found in the gene: LotjaGi1g1v0492400 LjG1.1_chr1 100590286 100596558 -
3 domain predictions
 –
LotjaGi1g1v0560400.1
n.a. Peptidyl-prolyl cis-trans isomerase; TAIR: AT2G16600.1 rotamase CYP 3; Swiss-Prot: sp|Q8W171|CYP1_SOYBN Peptidyl-prolyl cis-trans isomerase 1; TrEMBL-Plants: tr|K7LSN8|K7LSN8_SOYBN Peptidyl-prolyl cis-trans isomerase; Found in the gene: LotjaGi1g1v0560400 LjG1.1_chr1 109264236 109265145 -
3 domain predictions
 –
LotjaGi1g1v0715100.1
n.a. Peptidyl-prolyl cis-trans isomerase; TAIR: AT3G63400.1 Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein; Swiss-Prot: sp|Q9LY75|CYP63_ARATH Peptidyl-prolyl cis-trans isomerase CYP63; TrEMBL-Plants: tr|A0A151SJ02|A0A151SJ02_CAJCA 40 kDa peptidyl-prolyl cis-trans isomerase; Found in the gene: LotjaGi1g1v0715100 LjG1.1_chr1 128303126 128310045 -
3 domain predictions
 –
LotjaGi1g1v0733700.1
n.a. Peptidyl-prolyl cis-trans isomerase; TAIR: AT2G36130.1 Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein; Swiss-Prot: sp|Q9SIH1|CP18B_ARATH Peptidyl-prolyl cis-trans isomerase CYP18-2; TrEMBL-Plants: tr|I3T4L8|I3T4L8_LOTJA Peptidyl-prolyl cis-trans isomerase; Found in the gene: LotjaGi1g1v0733700 LjG1.1_chr1 130720292 130727603 -
3 domain predictions
 –
LotjaGi1g1v0733700.2
n.a. Peptidyl-prolyl cis-trans isomerase; TAIR: AT2G36130.1 Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein; Swiss-Prot: sp|Q9SIH1|CP18B_ARATH Peptidyl-prolyl cis-trans isomerase CYP18-2; TrEMBL-Plants: tr|I3T4L8|I3T4L8_LOTJA Peptidyl-prolyl cis-trans isomerase; Found in the gene: LotjaGi1g1v0733700 LjG1.1_chr1 130721607 130723092 -
3 domain predictions
 –
LotjaGi1g1v0753600.1
n.a. Peptidyl-prolyl cis-trans isomerase; TAIR: AT3G62030.1 rotamase CYP 4; Swiss-Prot: sp|Q41651|CYPB_VICFA Peptidyl-prolyl cis-trans isomerase, chloroplastic; TrEMBL-Plants: tr|I3SRL0|I3SRL0_LOTJA Peptidyl-prolyl cis-trans isomerase; Found in the gene: LotjaGi1g1v0753600 LjG1.1_chr1 132647002 132647879 +
3 domain predictions
 –
LotjaGi1g1v0785800.1
n.a. Peptidyl-prolyl cis-trans isomerase; TAIR: AT3G56070.1 rotamase cyclophilin 2; Swiss-Prot: sp|Q38867|CP19C_ARATH Peptidyl-prolyl cis-trans isomerase CYP19-3; TrEMBL-Plants: tr|I3SVV5|I3SVV5_LOTJA Peptidyl-prolyl cis-trans isomerase; Found in the gene: LotjaGi1g1v0785800 LjG1.1_chr1 135820441 135822367 -
3 domain predictions
 –
LotjaGi1g1v0785800.2
n.a. Peptidyl-prolyl cis-trans isomerase; TAIR: AT3G56070.1 rotamase cyclophilin 2; Swiss-Prot: sp|Q38867|CP19C_ARATH Peptidyl-prolyl cis-trans isomerase CYP19-3; TrEMBL-Plants: tr|I3SVV5|I3SVV5_LOTJA Peptidyl-prolyl cis-trans isomerase; Found in the gene: LotjaGi1g1v0785800 LjG1.1_chr1 135820624 135822240 -
3 domain predictions
 –
LotjaGi2g1v0247600.1
n.a. Peptidyl-prolyl cis-trans isomerase, putative; TAIR: AT3G01480.1 cyclophilin 38; Swiss-Prot: sp|Q9SSA5|CYP38_ARATH Peptidyl-prolyl cis-trans isomerase CYP38, chloroplastic; TrEMBL-Plants: tr|B9RUU4|B9RUU4_RICCO Peptidyl-prolyl cis-trans isomerase, putative; Found in the gene: LotjaGi2g1v0247600 LjG1.1_chr2 71300369 71305718 -
3 domain predictions
 –
LotjaGi2g1v0247600.2
n.a. Peptidyl-prolyl cis-trans isomerase; TAIR: AT3G01480.1 cyclophilin 38; Swiss-Prot: sp|Q9SSA5|CYP38_ARATH Peptidyl-prolyl cis-trans isomerase CYP38, chloroplastic; TrEMBL-Plants: tr|A0A151QQR2|A0A151QQR2_CAJCA Uncharacterized protein; Found in the gene: LotjaGi2g1v0247600 LjG1.1_chr2 71300369 71305718 -
3 domain predictions
 –
LotjaGi2g1v0247600.3
n.a. Peptidyl-prolyl cis-trans isomerase, putative; TAIR: AT3G01480.1 cyclophilin 38; Swiss-Prot: sp|Q9SSA5|CYP38_ARATH Peptidyl-prolyl cis-trans isomerase CYP38, chloroplastic; TrEMBL-Plants: tr|B9RUU4|B9RUU4_RICCO Peptidyl-prolyl cis-trans isomerase, putative; Found in the gene: LotjaGi2g1v0247600 LjG1.1_chr2 71301064 71303262 -
3 domain predictions
 –
LotjaGi2g1v0247600.4
n.a. Peptidyl-prolyl cis-trans isomerase; TAIR: AT3G01480.1 cyclophilin 38; Swiss-Prot: sp|Q9SSA5|CYP38_ARATH Peptidyl-prolyl cis-trans isomerase CYP38, chloroplastic; TrEMBL-Plants: tr|A0A151QQR2|A0A151QQR2_CAJCA Uncharacterized protein; Found in the gene: LotjaGi2g1v0247600 LjG1.1_chr2 71301064 71305230 -
3 domain predictions
 –
LotjaGi2g1v0247600.5
n.a. Peptidyl-prolyl cis-trans isomerase; TAIR: AT3G01480.1 cyclophilin 38; Swiss-Prot: sp|Q9SSA5|CYP38_ARATH Peptidyl-prolyl cis-trans isomerase CYP38, chloroplastic; TrEMBL-Plants: tr|A0A151QQR2|A0A151QQR2_CAJCA Uncharacterized protein; Found in the gene: LotjaGi2g1v0247600 LjG1.1_chr2 71301064 71305237 -
3 domain predictions
 –
LotjaGi2g1v0306300.1
n.a. Peptidyl-prolyl cis-trans isomerase; TAIR: AT1G26940.1 Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein; Swiss-Prot: sp|Q8LDR3|CYP23_ARATH Peptidyl-prolyl cis-trans isomerase CYP23; TrEMBL-Plants: tr|V7CHS7|V7CHS7_PHAVU Peptidyl-prolyl cis-trans isomerase; Found in the gene: LotjaGi2g1v0306300 LjG1.1_chr2 77968708 77975378 +
3 domain predictions
 –
LotjaGi2g1v0306300.2
n.a. Peptidyl-prolyl cis-trans isomerase; TAIR: AT1G26940.2 Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein; Swiss-Prot: sp|Q8LDR3|CYP23_ARATH Peptidyl-prolyl cis-trans isomerase CYP23; TrEMBL-Plants: tr|B7FMU5|B7FMU5_MEDTR Peptidyl-prolyl cis-trans isomerase; Found in the gene: LotjaGi2g1v0306300 LjG1.1_chr2 77969287 77974780 +
3 domain predictions
 –
LotjaGi2g1v0306300.3
n.a. Peptidyl-prolyl cis-trans isomerase; TAIR: AT1G26940.2 Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein; Swiss-Prot: sp|Q8LDR3|CYP23_ARATH Peptidyl-prolyl cis-trans isomerase CYP23; TrEMBL-Plants: tr|B7FMU5|B7FMU5_MEDTR Peptidyl-prolyl cis-trans isomerase; Found in the gene: LotjaGi2g1v0306300 LjG1.1_chr2 77969287 77974780 +
3 domain predictions
 –
LotjaGi2g1v0409700.1
n.a. Peptidyl-prolyl cis-trans isomerase-like protein; TAIR: AT5G67530.1 plant U-box 49; Swiss-Prot: sp|Q9FJX0|PPIL2_ARATH Peptidyl-prolyl cis-trans isomerase CYP65; TrEMBL-Plants: tr|A0A151SC33|A0A151SC33_CAJCA Peptidyl-prolyl cis-trans isomerase-like 2; Found in the gene: LotjaGi2g1v0409700 LjG1.1_chr2 90654005 90658132 +
3 domain predictions
 –