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Field | Value |
---|---|
Gene ID | LotjaGi6g1v0005900 |
Transcript ID | LotjaGi6g1v0005900.6 |
Related isoforms 6 | |
Lotus japonicus genome version | Gifu v1.2 |
Description | Serine/threonine-protein phosphatase; TAIR: AT2G39840.1 type one serine/threonine protein phosphatase 4; Swiss-Prot: sp|P48489|PP1_ORYSJ Serine/threonine-protein phosphatase PP1; TrEMBL-Plants: tr|G7I5D1|G7I5D1_MEDTR Serine/threonine-protein phosphatase; Found in the gene: LotjaGi6g1v0005900 |
Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr6:1215721..1218608) extracted from Lotus japonicus Gifu genome v1.2.
ATTCCTTCCTTCTCTGCACAGTGAGTCTCCCTTTCTGTTTTTGTGATTTTTAAAACGCACTCTTCTCTTCCTTCAACCAA CCGAATATATTCTCTTCCTTCAAGTTCACCTGCCACCACTCGTTTCCAATAGCTCACAAGAACCACAAGGGGCCCCTCAA AAGATTGCATATCTAAACCAAAGGATTGATTCCATTGTTCCCTTGAGTTGAAGTTATAACCTTGTTTTCAAAGTGATGAT GCCTCTTATAAAACACTCAACAACATCATCAACCAAAGGTTCTTTATTATACTTTGCTCTTTTCTTAATTCCTCTTGCCT TTTCTTTTTCCTTGCTTGTTAGTTTATCTTTGAGGATTGATTGGTATCATTTTTGGGTCAGAGCCATTGTCATGGAACGA GAATTTCTGGATGCTATCATCAATAGGCTGCTTGAAGTGAGAGGGAGACCTGGGAAGCAGGTGCAGCTTTCAGAGACAGA GATCAAGAAGCTTTGTATGGTTTCTAGAGATATCTTCCTGAAGCAACCAATGCTGTTGGAACTTGAGGCACCAATTAAGA TATGTGGTATGTATTTGCTAACTCCCATGTTCTGTTTTACTTTTAGAATTCACTTCTTAGTTTCTTGCTCAATTTTTAAG TATATGGCAATTGGTTTTTTATGATGTTTCTGATGATGTTAATGAGTTTTACATCCAGTTTTAAGTTTCATAGAACATAA TCTAGTCTAAGGTTGGGTTAAATTATACCAAAATGGAACAACAATTAAATGAACATCCAGTCTTTATTCTAATTTGAATA AGAAGAATGGTGTTTCTAATGGTTTCTCCTAATGTTTTTATTGGGTGAAATTTTTCTTTTGTTTTCTTTTTTGAAACTTA GGAGGGTATTTAATTACTGAAGTGAAGATGAAACTGAGAAGATAGGAAGCATTAATTGGCTAAACATGAATGTTGTAGGA ACTAGGATATTACAGTGATTGCAGAGGATTACTATGTTTATTCTAATTAGAAGATCTAGTTTCCAAGACAACCTCTAAGA AATGGGGATACCTTACCATGAGTTGCATTTTATATTTTTGGGAAAGTTGATTTGCTCTTCTCATTCTTGATTGTTGTACA TGTTTTGAATCATCCACTTTAGTTTACTTGATTGTTGCAGAAAACTATTGTCAGCTAAATAGAATTTCGAGATAAACTTT TTAGTTGATCATAATTTGTGTGAAATTTATATTTTAAGGTATTTTTTGAGATATGAATTCAAATCTTTATAAATTTCAAT TATGAATGTGAGAATTTTTAATCTAAACTTGTATTCACTATGTTATGTAGATATCATATTGCTTTTGTCTCGTATAAAAA ACAAAAGGTTTTATTAATATAAAGTAGGAACTAGTATCATTCTTGATTCAATTCAATATGTTACCAGGAGATATCCATGG CCAATATGCAGACCTTCTGAGACTCTTTGAGCATGGTGGATTCCCTCCTCGTTCCAATTACTTGTTTCTAGGCGATTATG TGGATCGTGGAAAGCAAAGTCTTGAGACAATATGTCTTCTCCTCGCCTACAAAATAAAATATCCAGAAAATTTTTTCCTT CTTAGGGGAAACCATGAGTGTGCTTCAATAAACCGTGTCTATGGATTTTATGATGAATGTAAAAGGAGATTCAATGTCAG GATCTGGAAAACATTTTCAGATTGTTTCAACTGTTTGCCTGTGGCGGCTATCATTGAAGATAAGATCCTGTGCATGCATG GTGGACTCTCCCCTGAATTGCATAGCTTAAATCAGATTAGCATGTTGCCACGTCCAGCAGAAGTTCCAGAAACTGGTCTG TTATGTGATCTCTTGTGGTCTGATCCTAGTAAAGAGATTCAGGACTGGGGAATGAGTGAACGTGGAGTTTCATATACTTT TGGTGCTACCAGGGTTGCAGAGTTTCTTCAAAAGCATGATCTTGACTTGATTTGTAGAGCGCACCAGGTTACTCATAAAC TTTATAAGTGTACGGTAGAAAAACACGGTGAAGTTAAAATCACGCTAGACAGAAGGAAAAGCTAAAGGAAGTTGTTTTTC CTCACCATGATTTAGACACGCCGTGATTTTCTTATAGTGTATAGAAACATGCCTGACGTCTTAATATGGAATTATATGAC AAGAGTTTAAGTATATGACTCATGAACCAACTATCCTAAACATTTAAATTGTTGGAAAAAGAACACATGAATTATTTTAT ATTATATTTCTAACATGACCTCCCACGCAAGAGCTCATTCGGCTTGAAGCATGGACAATGCATACACTACCTTATGCTGA AATTCAACTTTTTATTATATTTGTAGGAAACAAGAATCAAACTCTACATTACTTATAAAAACTCTAATACCATGTCAAAA CCCAACTACTTTAAAATCTTAAGTTGTTGGGTGAAGGACATGTGAATATTTACATTATATTTCTAACAATATTTATTACT TCTGATAGGTGGTTGAAGATGGATATGAATTTTTTGCTAATAGACAACTTGTGACTATCTTTTCTGCTCCTAATTACTGT GGAGAGTTTGACAATGCTGGGGCAATGATGAGTGTTGATGACACACTTATGTGCTCTTTTCAGATATTAAGGCCTGTGGA TCATAAAAGGCCCAAGTTTGGTTTTGGGAAAACAACTAGATTCAAGGCTAGTACTCCAAAAGAATCTTGGTATTTTTAGT TCTTGAATCCAGAATTTTGACATGTTCAGTAAATGGTTATATGATATTTTGGTAGTTTCATATTATTGCAAACTCCACAT AGGGTGTGATTACCTACTAGCATTACTTAATTCAGGAAAAAAATGTGTTGGCTCTCAATTTTCAGTAGGGAACTGTCTAA TACTCTAA
CDS sequence (LotjaGi6g1v0005900.6) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGAACGAGAATTTCTGGATGCTATCATCAATAGGCTGCTTGAAGTGAGAGGGAGACCTGGGAAGCAGGTGCAGCTTTC AGAGACAGAGATCAAGAAGCTTTGTATGGTTTCTAGAGATATCTTCCTGAAGCAACCAATGCTGTTGGAACTTGAGGCAC CAATTAAGATATGTGGAGATATCCATGGCCAATATGCAGACCTTCTGAGACTCTTTGAGCATGGTGGATTCCCTCCTCGT TCCAATTACTTGTTTCTAGGCGATTATGTGGATCGTGGAAAGCAAAGTCTTGAGACAATATGTCTTCTCCTCGCCTACAA AATAAAATATCCAGAAAATTTTTTCCTTCTTAGGGGAAACCATGAGTGTGCTTCAATAAACCGTGTCTATGGATTTTATG ATGAATGTAAAAGGAGATTCAATGTCAGGATCTGGAAAACATTTTCAGATTGTTTCAACTGTTTGCCTGTGGCGGCTATC ATTGAAGATAAGATCCTGTGCATGCATGGTGGACTCTCCCCTGAATTGCATAGCTTAAATCAGATTAGCATGTTGCCACG TCCAGCAGAAGTTCCAGAAACTGGTCTGTTATGTGATCTCTTGTGGTCTGATCCTAGTAAAGAGATTCAGGACTGGGGAA TGAGTGAACGTGGAGTTTCATATACTTTTGGTGCTACCAGGGTTGCAGAGTTTCTTCAAAAGCATGATCTTGACTTGATT TGTAGAGCGCACCAGGTGGTTGAAGATGGATATGAATTTTTTGCTAATAGACAACTTGTGACTATCTTTTCTGCTCCTAA TTACTGTGGAGAGTTTGACAATGCTGGGGCAATGATGAGTGTTGATGACACACTTATGTGCTCTTTTCAGATATTAAGGC CTGTGGATCATAAAAGGCCCAAGTTTGGTTTTGGGAAAACAACTAGATTCAAGGCTAGTACTCCAAAAGAATCTTGCTAC TAG
Protein sequence (LotjaGi6g1v0005900.6) extracted from Lotus japonicus Gifu v1.2 Proteins.
MEREFLDAIINRLLEVRGRPGKQVQLSETEIKKLCMVSRDIFLKQPMLLELEAPIKICGDIHGQYADLLRLFEHGGFPPR SNYLFLGDYVDRGKQSLETICLLLAYKIKYPENFFLLRGNHECASINRVYGFYDECKRRFNVRIWKTFSDCFNCLPVAAI IEDKILCMHGGLSPELHSLNQISMLPRPAEVPETGLLCDLLWSDPSKEIQDWGMSERGVSYTFGATRVAEFLQKHDLDLI CRAHQVVEDGYEFFANRQLVTIFSAPNYCGEFDNAGAMMSVDDTLMCSFQILRPVDHKRPKFGFGKTTRFKASTPKESCY
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
---|---|---|---|---|---|---|
PANTHER | 1 | 315 | 315 | 1.5E-208 | – | |
PANTHER | 1 | 315 | 315 | 1.5E-208 | – | |
Gene3D | 2 | 305 | 304 | 4.2E-134 | ||
CDD | 5 | 294 | 290 | 0.0 | – | |
Pfam | 6 | 52 | 47 | 6.6E-22 | ||
SUPERFAMILY | 17 | 299 | 283 | 1.19E-117 | – | |
SMART | 26 | 296 | 271 | 6.5E-164 | ||
Pfam | 54 | 245 | 192 | 4.4E-40 | ||
PRINTS | 54 | 81 | 28 | 6.9E-95 | ||
PRINTS | 83 | 110 | 28 | 6.9E-95 | ||
PRINTS | 116 | 140 | 25 | 6.9E-95 | ||
ProSitePatterns | 117 | 122 | 6 | - | ||
PRINTS | 150 | 176 | 27 | 6.9E-95 | ||
PRINTS | 179 | 206 | 28 | 6.9E-95 | ||
PRINTS | 236 | 256 | 21 | 6.9E-95 | ||
PRINTS | 258 | 274 | 17 | 6.9E-95 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
GO term | Namespace | Name | Definition | Relationships |
---|---|---|---|---|
Molecular function | Hydrolase activity | Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3. |
Expression pattern of LotjaGi6g1v0005900.6, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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