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TREX

Transcript Explorer
for L. japonicus reference genomes

The Transcript Explorer tool can be used to search for candidate Lotus genes using user-defined keywords, or to comb a specific genomic interval—a combination of chromosome and position range—for genes/transcripts of interest.

Repeat Search

  • IPR029052
Separate each keyword, or gene/transcript ID, with a comma or tab. Spaces are not accepted as delimiters due to their potential use in boolean searches.
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Download the entire search result as a CSV file.

We have found 237 results. Now displaying 1 of 5 with 50 rows per page. This search has taken 6.627s to perform.

Transcript Name Description Chr Start End Strand Domain predictions GO predictions
Lj0g3v0036759.1
n.a. Vacuolar protein sorting [Medicago truncatula] gi|357493205|ref|XP_003616891.1| chr0 11798227 11801406 +
3 domain predictions
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Lj0g3v0109269.1
n.a. PREDICTED: probable inactive purple acid phosphatase 29-like [Glycine max] gi|356573279|ref|XP_003554790.1| chr0 47291067 47294879 +
3 domain predictions
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Lj0g3v0127469.1
n.a. PREDICTED: probable purple acid phosphatase 20-like [Glycine max] gi|356503803|ref|XP_003520692.1| chr0 57456957 57460154 +
3 domain predictions
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Lj0g3v0278189.1
n.a. PREDICTED: serine/threonine-protein phosphatase PP1 isozyme 1-like [Cicer arietinum] gi|502155470|ref|XP_004510082.1| chr0 144465061 144465513 +
3 domain predictions
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Lj0g3v0289529.1
n.a. Pectinesterase [Medicago truncatula] gi|357491093|ref|XP_003615834.1| chr0 150356222 150361734 +
3 domain predictions
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Lj0g3v0295769.1
n.a. PREDICTED: probable inactive purple acid phosphatase 1-like [Glycine max] gi|356567597|ref|XP_003552004.1| chr0 153659619 153668384 -
3 domain predictions
 –
Lj0g3v0295769.2
n.a. PREDICTED: probable inactive purple acid phosphatase 1-like [Glycine max] gi|356567597|ref|XP_003552004.1| chr0 153659619 153668384 -
3 domain predictions
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Lj0g3v0300529.1
n.a. protein phosphatase 1 catalitic subunit [Medicago sativa] gi|3176076|emb|CAA05493.1| chr0 156153751 156158582 -
3 domain predictions
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Lj0g3v0332219.1
n.a. PREDICTED: purple acid phosphatase 15-like [Cicer arietinum] gi|502135092|ref|XP_004502218.1| chr0 173783382 173788732 -
3 domain predictions
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Lj0g3v0334279.1
n.a. PREDICTED: serine/threonine-protein phosphatase 7-like [Glycine max] gi|356531319|ref|XP_003534225.1| chr0 174951999 174959092 -
3 domain predictions
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Lj0g3v0335139.1
n.a. Manganese-dependent ADP-ribose/CDP-alcohol diphosphatase [Medicago truncatula] gi|357461745|ref|XP_003601154.1| chr0 175457813 175461497 +
3 domain predictions
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Lj0g3v0335139.2
n.a. PREDICTED: manganese-dependent ADP-ribose/CDP-alcohol diphosphatase-like isoform X6 [Cicer arietinum] gi|502133712|ref|XP_004501864.1| chr0 175457813 175461497 +
3 domain predictions
 –
Lj0g3v0345689.1
n.a. Calcineurin-like metallo-phosphoesterase superfamily protein isoform 2 [Theobroma cacao] gi|508782349|gb|EOY29605.1| chr0 181326948 181332260 -
3 domain predictions
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Lj0g3v0348919.1
n.a. purple acid phosphatases [Glycine max] gi|304421406|gb|ADM32502.1| chr0 183162435 183165003 -
3 domain predictions
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Lj0g3v0358329.1
n.a. PREDICTED: purple acid phosphatase 22-like [Cicer arietinum] gi|502111775|ref|XP_004494164.1| chr0 188619282 188623263 -
3 domain predictions
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Lj0g3v0358329.2
n.a. PREDICTED: purple acid phosphatase 22-like [Cicer arietinum] gi|502111775|ref|XP_004494164.1| chr0 188619282 188622044 -
3 domain predictions
 –
Lj0g3v0363459.1
n.a. PREDICTED: probable inactive purple acid phosphatase 27-like [Glycine max] gi|356529842|ref|XP_003533496.1| chr0 191723313 191725524 -
3 domain predictions
 –
Lj0g3v0363469.1
n.a. PREDICTED: probable inactive purple acid phosphatase 27-like [Glycine max] gi|356529842|ref|XP_003533496.1| chr0 191725943 191732444 -
3 domain predictions
 –
Lj1g3v1596960.1
n.a. PREDICTED: double-strand break repair protein MRE11-like [Glycine max] gi|356542248|ref|XP_003539581.1| chr1 19135032 19143836 +
3 domain predictions
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Lj1g3v1810140.2
n.a. PREDICTED: lariat debranching enzyme-like [Cicer arietinum] gi|502133507|ref|XP_004501789.1| chr1 21911596 21920109 -
3 domain predictions
 –
Lj1g3v2842350.1
n.a. Transmembrane protein [Medicago truncatula] gi|357507853|ref|XP_003624215.1| chr1 32387753 32392076 +
3 domain predictions
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Lj1g3v3646370.1
n.a. n.a. chr1 42063169 42068880 -
3 domain predictions
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Lj1g3v4763900.1
n.a. PREDICTED: serine/threonine-protein phosphatase PP2A catalytic subunit-like [Cicer arietinum] gi|502112354|ref|XP_004494304.1| chr1 57201547 57206785 +
3 domain predictions
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Lj1g3v4918780.1
n.a. PREDICTED: serine/threonine-protein phosphatase PP1-like [Glycine max] gi|356505811|ref|XP_003521683.1| chr1 59715120 59718009 +
3 domain predictions
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Lj2g3v0636570.1
n.a. PREDICTED: purple acid phosphatase 17-like isoform X1 [Cicer arietinum] gi|502164940|ref|XP_004513338.1| chr2 10163608 10166676 -
3 domain predictions
 –
Lj2g3v0661360.1
n.a. PREDICTED: vacuolar protein sorting-associated protein 29-like [Cicer arietinum] gi|502134242|ref|XP_004502048.1| chr2 10656263 10658063 +
3 domain predictions
 –
Lj2g3v1068840.1
n.a. PREDICTED: purple acid phosphatase 23-like [Cicer arietinum] gi|502091054|ref|XP_004489427.1| chr2 17248038 17253767 -
3 domain predictions
 –
Lj2g3v1068840.2
n.a. PREDICTED: purple acid phosphatase 23-like [Cicer arietinum] gi|502091054|ref|XP_004489427.1| chr2 17248038 17253767 -
3 domain predictions
 –
Lj2g3v1252560.1
n.a. PREDICTED: probable inactive purple acid phosphatase 1-like isoform X1 [Cicer arietinum] gi|502094354|ref|XP_004490199.1| chr2 19856023 19862226 -
3 domain predictions
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Lj2g3v1364780.1
n.a. PREDICTED: serine/threonine-protein phosphatase PP2A catalytic subunit-like [Cicer arietinum] gi|502093455|ref|XP_004489948.1| chr2 21384404 21389264 -
3 domain predictions
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Lj2g3v2351590.1
n.a. Pectinesterase [Medicago truncatula] gi|357491093|ref|XP_003615834.1| chr2 33820039 33824446 -
3 domain predictions
 –
Lj2g3v2351590.2
n.a. Pectinesterase [Medicago truncatula] gi|357491093|ref|XP_003615834.1| chr2 33820039 33823436 -
3 domain predictions
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Lj2g3v2661450.1
n.a. PREDICTED: serine/threonine-protein phosphatase PP1 isozyme 4-like [Cicer arietinum] gi|502096857|ref|XP_004490848.1| chr2 35836494 35842251 -
3 domain predictions
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Lj2g3v2899890.1
n.a. Calcineurin-like metallo-phosphoesterase superfamily protein isoform 1 [Theobroma cacao] gi|508723949|gb|EOY15846.1| chr2 37607944 37613087 +
3 domain predictions
 –
Lj2g3v2899890.2
n.a. Calcineurin-like metallo-phosphoesterase superfamily protein isoform 1 [Theobroma cacao] gi|508723949|gb|EOY15846.1| chr2 37607944 37613087 +
3 domain predictions
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Lj2g3v3224090.1
n.a. n.a. chr2 41206745 41208004 -
3 domain predictions
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Lj2g3v3224220.1
n.a. PREDICTED: serine/threonine-protein phosphatase PP-X isozyme 2-like isoform X2 [Cicer arietinum] gi|502099270|ref|XP_004491437.1| chr2 41223069 41227463 -
3 domain predictions
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Lj3g3v0323380.1
n.a. PREDICTED: serine/threonine-protein phosphatase 7-like [Glycine max] gi|356550416|ref|XP_003543583.1| chr3 2485241 2490358 -
3 domain predictions
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Lj3g3v0323380.2
n.a. PREDICTED: serine/threonine-protein phosphatase 7 inactive homolog isoform X2 [Cicer arietinum] gi|502081380|ref|XP_004486849.1| chr3 2485241 2490358 -
3 domain predictions
 –
Lj3g3v0461550.1
n.a. PREDICTED: serine/threonine-protein phosphatase PP1 isozyme 1-like [Cicer arietinum] gi|502155470|ref|XP_004510082.1| chr3 4875057 4876530 -
3 domain predictions
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Lj3g3v0681540.1
n.a. PREDICTED: double-strand break repair protein MRE11-like [Glycine max] gi|356542248|ref|XP_003539581.1| chr3 7399235 7408039 -
3 domain predictions
 –
Lj3g3v0821240.1
n.a. PREDICTED: probable inactive purple acid phosphatase 16-like [Cicer arietinum] gi|502179076|ref|XP_004516368.1| chr3 9981741 9986211 -
3 domain predictions
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Lj3g3v1294420.2
n.a. BRI1 suppressor 1 (BSU1)-like 3 isoform 4 [Theobroma cacao] gi|508786023|gb|EOY33279.1| chr3 16460160 16469937 -
3 domain predictions
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Lj3g3v2531210.1
n.a. PREDICTED: probable inactive purple acid phosphatase 29-like, partial [Cicer arietinum] gi|502156735|ref|XP_004510621.1| chr3 31071890 31072687 -
3 domain predictions
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Lj3g3v2532300.1
n.a. Serine/threonine phosphatase-like protein [Medicago truncatula] gi|357514393|ref|XP_003627485.1| chr3 31108794 31114812 +
3 domain predictions
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Lj3g3v2613500.1
n.a. Metallophosphoesterase [Medicago truncatula] gi|357513939|ref|XP_003627258.1| chr3 32199664 32202613 -
3 domain predictions
 –
Lj3g3v2613500.2
n.a. PREDICTED: metallophosphoesterase 1-like [Fragaria vesca subsp]. vesca] gi|470127340|ref|XP_004299630.1| chr3 32199664 32202613 -
2 domain predictions
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Lj3g3v2928410.1
n.a. BRI1 suppressor 1 (BSU1)-like 2 isoform 1 [Theobroma cacao] gi|508786020|gb|EOY33276.1| chr3 36606657 36618050 +
3 domain predictions
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Lj3g3v2928410.2
n.a. BRI1 suppressor 1 (BSU1)-like 2 isoform 1 [Theobroma cacao] gi|508786020|gb|EOY33276.1| chr3 36607398 36618050 +
3 domain predictions
 –
Lj3g3v3640290.1
n.a. PREDICTED: probable inactive purple acid phosphatase 27-like [Glycine max] gi|356529842|ref|XP_003533496.1| chr3 44449951 44459166 +
3 domain predictions
 –