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| Field | Value |
|---|---|
| Gene ID | LotjaGi6g1v0037500 |
| Transcript ID | LotjaGi6g1v0037500.2 |
| Related isoforms 2 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | ATP dependent RNA helicase; TAIR: AT2G42520.1 P-loop containing nucleoside triphosphate hydrolases superfamily protein; Swiss-Prot: sp|Q84W89|RH37_ARATH DEAD-box ATP-dependent RNA helicase 37; TrEMBL-Plants: tr|A0A151SQC4|A0A151SQC4_CAJCA DEAD-box ATP-dependent RNA helicase 37; Found in the gene: LotjaGi6g1v0037500 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr6:7386443..7390652) extracted from Lotus japonicus Gifu genome v1.2.
ATGCGATCTTCATGGGCTGATTTGGCTGCGAATTCCGCGGCCGAGAACAACGCACCTTCTTCCGCCACCAACAACTCTCA AGCTCCAACCCGTCCTGCTTATGTGCCTCCGCATCTCCGCAACCGCCCACCATCTCACCACTCTCCGGCGGAATCCTCTG CTCCTCCTCCGGCCGCCGCTCCCCGCTGGGGTGCGCCCAGGGATGATTACCGTTCCTCCGGGCCGCCCCGATGGGGCGGC AACCGGGGCGGAAGGGACCGTGAAGTCAACCCGTTTGACGATGTGGAGGATGTCCCTGAGGAAGCGTTTGGTGACCAGGA GAACACTGGGATAAACTTCGATGCGTATGAGGATATCCCTGTGGAGACTAGCGGCGGGAACGTGCCGCCGCCGGTGAACA CGTTTGCGGAGATCGATTTAGGGGATGCGCTGAATGAGAATATTCGCCGCTGCAAGTACACGAGGCCCACGCCGGTGCAG CGGCACGCCATTCCGATTTCCTTGGCTGGGAGGGACCTGATGGCGTGTGCACAGACCGGGTCGGGGAAGACGGCGGCGTT CTGCTTCCCCATCATCAGTGGGATCATGACGGGCCAGCCTGCACAGAGGCCGCCTCGCGGGGTGCGCACGGTGTATCCGC TTGCCCTCGTTCTGTCGCCGACTAGGGAGCTGTCGATGCAGGTGAGTTTTGGTTTGTTGTTTGCTGTGTTGGGACATGCC TTTTTCAATTGGGTTATATATCTGAAATGTTGTCATTTGGTTTCAGATACACCAAGAGGCTAAGAAGTTCTCATACCAGA CTGGGGTTAGGGTGGTTGTTGCTTATGGTGGAGCTCCAATAAACCAGCAGGTTTCTCTCTTCTTGTTCTTTGTTTTGTTT TTCTTAGAATTAATTAATTGTGCTATTCTTTTTACATGCTTCAATTATTGTTATCTATTTTATTCTGTTCATTGATTAAC ATGGATGACTCCACATCGTGCGATATAAGGCTAGGTAGTTGTTATTCTCACAGATGTTTCTGTTGATTCTGAAGCTTTTG TAGTGGTTACTTTAGATTGTTGCATCCATAATTCACATTCATTGATATCAGAGGGATTTCTGATATACATAAGGATAGGA GTTTGTGAACTACTGTATCTATTGAACAAATTAACTATTTCAGGACATTGCTAATGAACTAATCATTTTCTGAATAAAAT TTGCGAGTATGTTTAAACTTTATAAAATAAATGTTACTCTAGCTAGGATGCTCTGGAATTTGTGTTGAATATGTCCAATA TGGGCTCTGGAATCTAGAATATATTGTTCTCGAATGACCAATCTTATTTTACTTTTGAATGCTACTATGAACGTTTCTAT TTGGTATAGATTCTAACTGTATAAATTTTTCCAGCTACGCGATCTTGAGAGAGGTGTGGACATTCTTGTTGCAACTCCAG GAAGACTGGTAGATTTGCTGGAGAGAGCTAGAGTCTCACTGCAGATGATCCGATATCTGGCCTTAGATGAGGCAGATAGG ATGTTGGATATGGGTTTTGAACCACAAATACGGAAGATTGTGGAACAGATGGACATGCCTCCACCAGGTTCCAGACAGAC TATGCTGTTCAGTGCCACGTTTCCGAAAGAGATACAGGTTTGATTCATTCTCCAGAGTCATACTTTTTTCAGGGAAGCAT CCTTATAATATTCCCTTACCATTTTAGGTTGTCCAAGACGTGTTTTCCTTATGTACTTGTGCTGAGGAGTCTTAGCTCTC ACCCTTTTATCCTGTAGAAAATTTAAGTACTGTTGAGAACTTTGGATTAAATAATGGAAATTTCTGATTTGTGTTGAGGG AATAAGTGGCTTGAGATGTATAAATAACACATGAATACTCTTTGATGTGGGATAAGTAGGCTCCTCATTACATCTGACTT TTGTTGTGATTTACTGTTGATATGCAGAGACTGGCCGCTGATTTTCTTTCAAATTATATTTTTCTGGCTGTTGGAAGAGT GGGCTCAAGTACTGATTTAATTGTCCAAAGAGTTGAGTATGTTCAAGAGTCTGACAAGAGAAGTCACCTCATGGACCTTC TTCATGCACAGAGGGCAAATGGTGTACAAGGAAAGGTATTCTCGCAGTTCTCAGAAAGTGCATTTCTCTCATAAAACTTA TGAAATGTATCTGTGCTTTTTGGAAACTAAAACGTGAAAGTATAGAAATGCACCTTTCCAATGGTTTATTCAAGTTGTTT CGTCCTCAATCTGCTGCTGAATGCTGATGCATATATGCATTGGTCTTGGGAAATTAACCCAGATCAACTGAAGTTCTGGT TATGGATATAAAAATAATAATGCTGCGTTAAGTGAGGTGGTTGGTTGGTTTATGATTGCATCTTTTAGTAATATGTGGAT CTTTTAACAGTATTCCACATTCTGAAAAAGGTTATAAAGAAATACTTTTGCCTAGTATTGTCTAATAAACTGTCCTGACC CTCTCTGTATGGGTTGCCCTGGTTTATACTTATCCACCCAATACATTTGGCTCGCATCACTTGATCATATTTGTACTACC TCTTTTTGTCATTGCATATATTCTGTTGTTTATAATATCTTGGCATTTCTCTGTTTCTGTCATGTTTAGCTCTTTCAGAT TATACTCACCTCTGGATAGTTCCACATGGATATATCAGTGTAGTAGATATATAGTTTGGACGTTGTGTTTTCTCACAGTA TATACATGCGCTTTCTCTGTAGGAACAAACTCTATTGCTAAATTAGTAAATTATGTTAAGACTTTCATGCTTGATTTTAA TTTTGCAGCAAGCTTTGACTTTAGTTTTTGTGGAGACAAAAAAGGGAGCAGATGCTCTGGAACACTGGTTGTGTCTAAAT AACTTTCCTGCAACTACTATTCATGGTGACAGGTCACAACAGGTTAGTCAGTTGTTCAATCATATTTTCCTTTGATGTGC AAATTACTACTCTGCTCTGCTTAAATTTTTCAGTGGACAAGGTCCATCCATACCCCTGGATCCTCATTATAGTGTCTGGT TATAAGTTAGTTAAATGTGAGATATGAATGACATTAACTGACTTCTATATATTTGTTGCTTTCTCTGCCAATTTTTTGTA TTGGGAGAGTACAGTTATGGCGTATCGATGAACCACTGAAGCATATTTCATAATGAAAATTGAAAACTAAAATAAAATAA GATTGAGATATTCAATTTATTGAACCCTAAATAGTAAGTTGGCATTAGATGATTTTAGGGGTCATCATGAACTTATGCTG GCATTTGGTCTGAAAGAAAGATACCAATTGCATGTCACTCTGTAAATTCTAAGGAACCTAATTCCCGCAAATGTTTTGGA AGGAATTTTTGAAGAACTTTTTGGTCCACATTGTAAATTTTTTATTCCACTGAATCATTTTGAAAAAATTGTTTTGTTTG AATGACTATTTTTTAGCACCTTGTACATAATAATGATTTCCTTTTTTAAAAAAGTTTGAGGCACCCATACATCTTTTGTA GTTAGTCTGAGTTTTCTATTAGTTTGTTTGAAGCTGAAGCATGGAATTACCATGTCTCAAGGTTAAATGTGGTTACAATT AGTTATTTTTTTAATGAAATCTCAATTACTTTTCCAGTAGTTATAATGATTATTTTCAAGAGCTTTTTAGCTTGTATCAT TTACTAATATATGATTATGATGTTTTGAATGCCTGCAGGAAAGGGAATTTGCTTTAAGGTCATTTAAGAGTGGCAACACC CCCATATTGGTTGCCACTGATGTGGCTGCACGTGGTCTTGATATTCCGCATGTTGCCCATGTAGTTAACTTTGACCTTCC TAATGATATTGATGATTATGTACACCGTATTGGAAGGACGGGGCGAGCAGGAAAGAAAGGCCTTGCAACTGCATTCTTTA ATGACAACAATGCATCCCTAGCAAAGTCTTTAGCAGATCTGATGCAAGAAGCAAATCAAGAAGTACCTGCCTGGCTCTTG CGGTATGCTGCTCGCTCTTCCTTTGGTGGAGGAAGGAACCGTCGATCAGGAGGCCGTTTTGGTGGCCGTGACTTCCGAAG AGAAGGTTCTTTCAGCAGGGGTGGTTCTGATCACTACGGTGCAGGAAACAGCGGTGGTGGATATGGGGCTTCTGGTGGGT ATGCTGGAGGATACGGTGGTGGTCCTGGGGTAACCAGTGCATGGGACTGA
CDS sequence (LotjaGi6g1v0037500.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGCGATCTTCATGGGCTGATTTGGCTGCGAATTCCGCGGCCGAGAACAACGCACCTTCTTCCGCCACCAACAACTCTCA AGCTCCAACCCGTCCTGCTTATGTGCCTCCGCATCTCCGCAACCGCCCACCATCTCACCACTCTCCGGCGGAATCCTCTG CTCCTCCTCCGGCCGCCGCTCCCCGCTGGGGTGCGCCCAGGGATGATTACCGTTCCTCCGGGCCGCCCCGATGGGGCGGC AACCGGGGCGGAAGGGACCGTGAAGTCAACCCGTTTGACGATGTGGAGGATGTCCCTGAGGAAGCGTTTGGTGACCAGGA GAACACTGGGATAAACTTCGATGCGTATGAGGATATCCCTGTGGAGACTAGCGGCGGGAACGTGCCGCCGCCGGTGAACA CGTTTGCGGAGATCGATTTAGGGGATGCGCTGAATGAGAATATTCGCCGCTGCAAGTACACGAGGCCCACGCCGGTGCAG CGGCACGCCATTCCGATTTCCTTGGCTGGGAGGGACCTGATGGCGTGTGCACAGACCGGGTCGGGGAAGACGGCGGCGTT CTGCTTCCCCATCATCAGTGGGATCATGACGGGCCAGCCTGCACAGAGGCCGCCTCGCGGGGTGCGCACGGTGTATCCGC TTGCCCTCGTTCTGTCGCCGACTAGGGAGCTGTCGATGCAGATACACCAAGAGGCTAAGAAGTTCTCATACCAGACTGGG GTTAGGGTGGTTGTTGCTTATGGTGGAGCTCCAATAAACCAGCAGCTACGCGATCTTGAGAGAGGTGTGGACATTCTTGT TGCAACTCCAGGAAGACTGGTAGATTTGCTGGAGAGAGCTAGAGTCTCACTGCAGATGATCCGATATCTGGCCTTAGATG AGGCAGATAGGATGTTGGATATGGGTTTTGAACCACAAATACGGAAGATTGTGGAACAGATGGACATGCCTCCACCAGGT TCCAGACAGACTATGCTGTTCAGTGCCACGTTTCCGAAAGAGATACAGAGACTGGCCGCTGATTTTCTTTCAAATTATAT TTTTCTGGCTGTTGGAAGAGTGGGCTCAAGTACTGATTTAATTGTCCAAAGAGTTGAGTATGTTCAAGAGTCTGACAAGA GAAGTCACCTCATGGACCTTCTTCATGCACAGAGGGCAAATGGTGTACAAGGAAAGCAAGCTTTGACTTTAGTTTTTGTG GAGACAAAAAAGGGAGCAGATGCTCTGGAACACTGGTTGTGTCTAAATAACTTTCCTGCAACTACTATTCATGGTGACAG GTCACAACAGGAAAGGGAATTTGCTTTAAGGTCATTTAAGAGTGGCAACACCCCCATATTGGTTGCCACTGATGTGGCTG CACGTGGTCTTGATATTCCGCATGTTGCCCATGTAGTTAACTTTGACCTTCCTAATGATATTGATGATTATGTACACCGT ATTGGAAGGACGGGGCGAGCAGGAAAGAAAGGCCTTGCAACTGCATTCTTTAATGACAACAATGCATCCCTAGCAAAGTC TTTAGCAGATCTGATGCAAGAAGCAAATCAAGAAGTACCTGCCTGGCTCTTGCGGTATGCTGCTCGCTCTTCCTTTGGTG GAGGAAGGAACCGTCGATCAGGAGGCCGTTTTGGTGGCCGTGACTTCCGAAGAGAAGGTTCTTTCAGCAGGGGTGGTTCT GATCACTACGGTGCAGGAAACAGCGGTGGTGGATATGGGGCTTCTGGTGGGTATGCTGGAGGATACGGTGGTGGTCCTGG GGTAACCAGTGCATGGGACTGA
Protein sequence (LotjaGi6g1v0037500.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MRSSWADLAANSAAENNAPSSATNNSQAPTRPAYVPPHLRNRPPSHHSPAESSAPPPAAAPRWGAPRDDYRSSGPPRWGG NRGGRDREVNPFDDVEDVPEEAFGDQENTGINFDAYEDIPVETSGGNVPPPVNTFAEIDLGDALNENIRRCKYTRPTPVQ RHAIPISLAGRDLMACAQTGSGKTAAFCFPIISGIMTGQPAQRPPRGVRTVYPLALVLSPTRELSMQIHQEAKKFSYQTG VRVVVAYGGAPINQQLRDLERGVDILVATPGRLVDLLERARVSLQMIRYLALDEADRMLDMGFEPQIRKIVEQMDMPPPG SRQTMLFSATFPKEIQRLAADFLSNYIFLAVGRVGSSTDLIVQRVEYVQESDKRSHLMDLLHAQRANGVQGKQALTLVFV ETKKGADALEHWLCLNNFPATTIHGDRSQQEREFALRSFKSGNTPILVATDVAARGLDIPHVAHVVNFDLPNDIDDYVHR IGRTGRAGKKGLATAFFNDNNASLAKSLADLMQEANQEVPAWLLRYAARSSFGGGRNRRSGGRFGGRDFRREGSFSRGGS DHYGAGNSGGGYGASGGYAGGYGGGPGVTSAWD
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| MobiDBLite | 1 | 31 | 31 | - | – | |
| MobiDBLite | 1 | 92 | 92 | - | – | |
| MobiDBLite | 36 | 62 | 27 | - | – | |
| PANTHER | 68 | 588 | 521 | 5.8E-255 | – | |
| PANTHER | 68 | 588 | 521 | 5.8E-255 | – | |
| Gene3D | 92 | 351 | 260 | 2.0E-86 | – | |
| ProSiteProfiles | 133 | 161 | 29 | 10.513 | ||
| CDD | 134 | 355 | 222 | 8.33879E-162 | – | |
| SMART | 152 | 364 | 213 | 5.5E-62 | ||
| Pfam | 157 | 338 | 182 | 1.8E-50 | ||
| ProSiteProfiles | 164 | 349 | 186 | 29.604 | ||
| SUPERFAMILY | 214 | 503 | 290 | 1.53E-74 | ||
| Gene3D | 352 | 531 | 180 | 1.4E-56 | – | |
| ProSiteProfiles | 360 | 527 | 168 | 22.459 | ||
| CDD | 361 | 497 | 137 | 1.32099E-59 | – | |
| Pfam | 373 | 488 | 116 | 3.9E-29 | ||
| SMART | 407 | 488 | 82 | 4.8E-35 | ||
| MobiDBLite | 536 | 562 | 27 | - | – | |
| MobiDBLite | 541 | 557 | 17 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Nucleic acid binding | Interacting selectively and non-covalently with any nucleic acid. | ||
| Molecular function | ATP binding | Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator. |
Expression pattern of LotjaGi6g1v0037500.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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