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LotjaGi6g1v0038900.2

Overview

Field Value
Gene ID LotjaGi6g1v0038900
Transcript ID LotjaGi6g1v0038900.2
Related isoforms 1
Lotus japonicus genome version Gifu v1.2
Description TBC1 domain family member; TAIR: AT1G04830.3 Ypt/Rab-GAP domain of gyp1p superfamily protein; Swiss-Prot: sp|Q8R3D1|TBC13_MOUSE TBC1 domain family member 13; TrEMBL-Plants: tr|G7JA63|G7JA63_MEDTR RabGAP/TBC domain protein; Found in the gene: LotjaGi6g1v0038900
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr6:7549997..7555215) extracted from Lotus japonicus Gifu genome v1.2.

TGACATTTGTTGGAGAGTGTTGTGGTGGCAATTCCAGAGGCCATGTGTGAAGAAGAGAAATGGGAGGATCTAACATCATG CTAATGCTAATGCTACTCTGGAGTTGTCATTTCCTTCCTTAATCCTCATCTCCTCAACTAACTACTACAAATACAGAAAG TAAAACCCTAGAAAATTATGAAGAAGCGAGTACCCGACTGGCTCAACAGTCCTCTCTGGAACTCCGATCACCACCGCTTC TCCGCCGCACCGGACCCGCCGGAACCTCCTTCTCCTCCTCCACCCGTAATTCATGATTCGCGAACCAGACACAACGGCAT TACCACCTCACCTCCCTCTTCTTCCTCCGCATCTTCTTCCGATGACATCTCTCACTCCCGCCAAGGCCACGCTCAATTGT TAGCCGAGGTGAGCCTTCTTCACCTTCAATGGTTAACCGCCTCTATTACTACTGTCTTTGATTTACTAAGTTTATCATCA CTTGTTTTAGTTATCAAGAAAGGTCATAGATATGCGGGAATTGAGAAGACTCGCATCTCAAGGCATTCCTGATGCTTCTG GTTTGCGTTCTACAGTCTGGAAGGTACTCTTTTCTTTTTTCGTATCGTTACAAGTCCCACATTGGTTAGCGATATGACAT AGATAGCCTTTATAAATGGTAGACCGACTCTCGGCTTTCGAGCTAGCTTTTGGGTTGAGTTAGACCACATTTGATGTTAC AATTTATTTATTCATTCATGTGCACAGCTTTTGCTTGGGTATCTTCCGCAAGATCGCGCCCTTTGGTCCTCTGAATTAGC AAAGAAGAGGTCCCAGTACAAACATTTCAAAGACGACCTTCTCATGAATCCTGTTAGTTAGTTAGTTAGTTAGTTACTCA CGAGCTTATGTTACGTTTGCTTTATCTACATGGCTCCCTATCCTGATTGTTTCTGTGGCTAGTTAGTCAGAAATCACAAG GAGGATGTGCAGTTCGGCTAATTATGACACCGACGACTCCAAATTTGGGAGTAGGGGCATGCTTTCTAGATCACAAGTCA CTCAAGGCGAACACCCTTTGAGTCTTGGCAAGACCAGCATATGGAACCAATTCTTCCAGGTACTGTGCAAATTTCTCTCA ATAAGTAAATCAATACATGTGCAATTTGCAGGAAAGTATTATTAGAATATGTAATCTTTTTCATTTAGAAAATTATGCAT CAACTATTTTCGTGTTGCTTTGCACAATTGCCTGTAAGATGATTACAGTATTCTTCTATATCGTGAGGTGAAGTTTAGAA TAGGAACTGGTTAGAATAGGATAAAACAGAACATATTAGTTGTGTTTAATGATGGATGCATATAAGAAATAGAACAAAAC ATGGGATAAAGTTAAAAAAATTAATACAATTTGGTTCTACTAAAAAGATGGAAATAAAGAGAACAGCACAAAACAAGTTG TTATCTATTCTTTCCATATGCCAGATACTACCTAAATTTCTTAAATTAGATACTATGTGAGTGAGTTCAAAGGGGAACCT TGGTGCAATGGTTAGAGAAGTTCGAGTCGTGGAATAAGTCTCTTGTACATGCAAGGTAAGACTGTCTATAGTAGACTTGT AATGGATCTGACCCTTCTTTGGATGGTGGGAGCTTGATAGCATAAGTTTCCCTTTAGATACTATGTGAGTTTTCATGTAA TGAACTATTTTTGTTTCTACAATAACACTGTGTCCCGAGGTACATGTTAAGGGGTTGAGTTGCCCTTACCCGAATTCTAA TACGGTATCATAGCCTATCCTACATCCAATTTTTGGAGCATCTATAAATGGACCACCCGTAGATGTCTAGTCTTGCAAAC TTCACGCTCCAGATTTTCAACCCTGCACGTGAGGGGTGTGTGTGTTAAGTGCTACATTGACTAGGGGTATGATCAAATAA GTCCTTATAAATGGTAGAACAATCCTCACCCCTAAGCCTGCTTTGGGGTAAAGTTTACCTTGATTTCTAATATACCATAA TATCATTGGCCAACTATCCCAAAACAGGATATTGGGTGAAGCCACATGAATGCCTAAATTATATTTCTAACCCACCCCCT CAGGCAAGAGCCCATTGGACTTGAAGCATGGACAATGCACATGTCCACTTACCTTGTGTTGAAATTCAATTGTTTATTAG AATACTGGGGCGGACTACAATGATCGAAGTATAGACTGCTTGGTCATTATGAATCTAATACCATGTGATGAACCATCTGT CCAAAAGCTTAACTTGTTAAGTGAATACAAATGAATGGTTTCTATGATATATGTTATATTTCTAACATGCCCCCTCATGC AAGAGCCAATTGAAATTGAAGCATGGACAGTGTACAAATCCACTTATCTTGTGTGAAATAACTATCCCAAAGCTTAAGCT ATTAGGTGAAGACAAAATGATTTTATAATATTATATTTTAACAAGGTAATTATATTTAGCAAATGTTTACCAGCTACCAC TATTGATCTTGCTGTTGTCAATATTTTAGTCTTTAATTAACTTTATTGCTGTAAAACTCGTTCTGTACTCTGGGGTGTTG TAAATTGTGATAGTAAATTTCCTCTTTGTATGTTTTAGGACTCAGATATCATAGAACAGATTGACCGAGATGTAAAGCGC ACTCATCCAGATATACACTTCTTCTGTGGTGATTCTCAGTTTGCCAAATCTAATCAGGTTGATCCCTTATTTCTTTTGAA ATTCTTTCAAACTTAGTACAACAAGCGTTTTTATTGTCATGAATCTTTTGATTTACTTTCTTTTTTGTGGGGAATTTTCA GGAGTCTTTAAAGAACATATTAATTATCTTTGCAAAGTTGAACCCAGGTATAAGATATGTTCAAGGGATGAATGAGATAT TGGCTCCTCTATTCTATGTGTTAAAAAATGACCCTGAGGAGGAACATGCGGTGAGTTTACCCTTGCAAGCTCCCCTCACC CATCTTTGTCTTTAATATGAAAATGTATTATTGCTTACCAAGGAAATTAGGAAAAGAAATGTTGCCAAAAACAAGGCCCA TTGCCATGCCCATAAACAAAGAATCAATCCTCAATCTTGCCCTCCAAATATTAGGATGTCACCTCATTAGTCTTCTAAGG ATTTTGTTCACCAAATTAGTCACTCGTAGATTTAACATGTTACCATATTAGTTGTTCAATTTTTTCCCCACTGAATTAGT TGCTCGAAAAGACAACTTTCATTGAATTCTTCATTTGGTGTGATTTCCTTGTGCTTTTAAATAGATGGATTTGGTGAGAA TTGTGTACCCTATAGGGACTAGTTTTTGAAAAATTCTTGGAGAACTGGTATGGTGGCACTTTAGTTTTTTGAGGTAATTT GGTGACACTTCAATTTTTGGAGGTAATTTGGCAACGAAAATCTTAAGAGGGTAAATGTGATGACACCCTAATCTTTGGAG ATTCAAATTGAGATTTTACTCAAAAGAAAAAAAGTGAAATTATTAAAATGACCATGAGAATGTTGATAGGCTTTCTTTTC CAATTTTTTTGGTTAGATAGCAGTGATTGAGTTACGTAGATTCATGTTGCTTATGTTATATGACATTAACTTTGTTCAGC TGTTGCCAATTGCTATATGTGCAGGCCTTTGCTGAAGCAGATACATTCTTTTGTTTTGTTGAATTATTGAGTGGACTCCG AGATAATTTTTGCCAACAACTTGACAATAGTGTGGTTGGAATCCGTTCAACCATTACAAGATTGTCTCAGCTTTTAAAAG AACATGATGAAGAACTGTGGCGTCATCTTGAAGTCACGACTAAAGTAAGGTGCAAATTGAAGTGCATATAATTTCTAAAA TGAACCACCATTAAACAATTGATAAAAGAAATGGGTTGAGAGGGACAACTTATCCTTAGAATGTTGGTGATTAACTCAAT TTGGTTGGCATATTAGTCTAAGGAATGAGTGATGACAACATTGTACTTTGCTTTGCTTTATTAAATTTTTGAAATAAATT TTCCCTCCAATATTGACAAAATAAAAAATTAATGAAATAGAAAGTGTGCTTTTGTTAGTGGGACCACCCACCCATTAGGA GGGTTTACAGCAGGAAGAATTTGGGAGGTAACAGAATATTAGAACCTTAGAGAGTTAGTGATAATAATGACTGTCCACTA GACAGATATTAGTAAGTTAATGGAGGGGAGCAGGAATAAATTGGGAGGAAGGACTTTATATTCTATGTTTTTTTCATCTC TATCATCAGTTCTTGTATCTTCCTGGCATTGTTAGCTTCTGAGTCAATTCAGATTCAGTTCTATTAATTTCTTACGCGCC TCTTCGTTTTAGTGACATGAACGTGGCCTTCACTATCTATATAGTTGTTCTTTTGGAACTCTTATTGTCTATTTGTTGGT ACTGTTTTATGTTCTTCTTATATTCAATTAAGAATTAAGTGATGCTAGTGATCTTTAATTATTCAATACTTTTTTTTTTG GGTTGAATTCAGCATACTGTTTTGAGTGAAAATTGGCCAGATGATTGATTTGCTAATGTGTTTTTGCTTTGGTTATTGGG AAGTTGAACAGAAAAATCTCACCTTTCTGGTTCTAAATATCAGGTCAATCCCCAGTTTTATTCATTTAGGTGGATTACTC TCCTCTTAACTCAGGAATTTAATTTCCATGATATCCTTCATATTTGGGATACCCTTTTAAGTGATCCAGAGGGTCCACAG GTACAGTTTTCTTCATATTTACCTTGAATTATATTGGACTGACTTCCCTTCACCTAAACTCTACCAATTTACTAACTCTG CGTAATCATGTGCAGGAGACACTGCTCCGGATATGTTGTGCAATGCTAATACTCGTTCGAAGGCGCCTCCTAGCGGGTGA TTTCACTTCTAATCTCAAGTTGCTGCAAAGTTATCCCTCTACAAACATCAGTCATTTGCTCCATGTTGCCAATAAGTTAC GTGCACAGTCGGTCTAGTGGTTTTCACCTATGATTTTTTTGTATTTTGTTTTTGTCTCTAACATAGTGTTTCTAAATTTT GTGATTGTCGATTACTCTGTAAATGTTGGTTTAGGGAAAATCTTATATACTCGTATTTTTACTAAATTTGTATTGTAATT CTACATTACTGTGGTCTGGATGAAATTCGCTTGTATACTTAGTTGTTAAGCACCGGTGGTCCTTGTATTCTCCAAAGGAC ATTAGAATAAAACTATTTT
Download Genomic Sequence

CDS sequence (LotjaGi6g1v0038900.2) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGAAGAAGCGAGTACCCGACTGGCTCAACAGTCCTCTCTGGAACTCCGATCACCACCGCTTCTCCGCCGCACCGGACCC GCCGGAACCTCCTTCTCCTCCTCCACCCGTAATTCATGATTCGCGAACCAGACACAACGGCATTACCACCTCACCTCCCT CTTCTTCCTCCGCATCTTCTTCCGATGACATCTCTCACTCCCGCCAAGGCCACGCTCAATTGTTAGCCGAGTTATCAAGA AAGGTCATAGATATGCGGGAATTGAGAAGACTCGCATCTCAAGGCATTCCTGATGCTTCTGGTTTGCGTTCTACAGTCTG GAAGCTTTTGCTTGGGTATCTTCCGCAAGATCGCGCCCTTTGGTCCTCTGAATTAGCAAAGAAGAGGTCCCAGTACAAAC ATTTCAAAGACGACCTTCTCATGAATCCTTCAGAAATCACAAGGAGGATGTGCAGTTCGGCTAATTATGACACCGACGAC TCCAAATTTGGGAGTAGGGGCATGCTTTCTAGATCACAAGTCACTCAAGGCGAACACCCTTTGAGTCTTGGCAAGACCAG CATATGGAACCAATTCTTCCAGGACTCAGATATCATAGAACAGATTGACCGAGATGTAAAGCGCACTCATCCAGATATAC ACTTCTTCTGTGGTGATTCTCAGTTTGCCAAATCTAATCAGGCCTTTGCTGAAGCAGATACATTCTTTTGTTTTGTTGAA TTATTGAGTGGACTCCGAGATAATTTTTGCCAACAACTTGACAATAGTGTGGTTGGAATCCGTTCAACCATTACAAGATT GTCTCAGCTTTTAAAAGAACATGATGAAGAACTGTGGCGTCATCTTGAAGTCACGACTAAAGTCAATCCCCAGTTTTATT CATTTAGGTGGATTACTCTCCTCTTAACTCAGGAATTTAATTTCCATGATATCCTTCATATTTGGGATACCCTTTTAAGT GATCCAGAGGGTCCACAGGAGACACTGCTCCGGATATGTTGTGCAATGCTAATACTCGTTCGAAGGCGCCTCCTAGCGGG TGATTTCACTTCTAATCTCAAGTTGCTGCAAAGTTATCCCTCTACAAACATCAGTCATTTGCTCCATGTTGCCAATAAGT TACGTGCACAGTCGGTCTAG
Download CDS Sequence

Protein sequence (LotjaGi6g1v0038900.2) extracted from Lotus japonicus Gifu v1.2 Proteins.

MKKRVPDWLNSPLWNSDHHRFSAAPDPPEPPSPPPPVIHDSRTRHNGITTSPPSSSSASSSDDISHSRQGHAQLLAELSR KVIDMRELRRLASQGIPDASGLRSTVWKLLLGYLPQDRALWSSELAKKRSQYKHFKDDLLMNPSEITRRMCSSANYDTDD SKFGSRGMLSRSQVTQGEHPLSLGKTSIWNQFFQDSDIIEQIDRDVKRTHPDIHFFCGDSQFAKSNQAFAEADTFFCFVE LLSGLRDNFCQQLDNSVVGIRSTITRLSQLLKEHDEELWRHLEVTTKVNPQFYSFRWITLLLTQEFNFHDILHIWDTLLS DPEGPQETLLRICCAMLILVRRRLLAGDFTSNLKLLQSYPSTNISHLLHVANKLRAQSV
Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

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Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
MobiDBLite
mobidb-lite
1 70 70 - –
PANTHER
PTHR22957:SF511
21 224 204 9.6E-137 –
PANTHER
PTHR22957
21 224 204 9.6E-137 –
MobiDBLite
mobidb-lite
43 68 26 - –
SUPERFAMILY
SSF47923
77 281 205 1.67E-29
IPR035969
SMART
SM00164
92 348 257 3.6E-22
IPR000195
ProSiteProfiles
PS50086
97 322 226 17.93
IPR000195
PANTHER
PTHR22957
226 375 150 9.6E-137 –
PANTHER
PTHR22957:SF511
226 375 150 9.6E-137 –
Pfam
PF00566
231 343 113 4.0E-21
IPR000195
Gene3D
G3DSA:1.10.472.80
258 378 121 1.2E-36 –
SUPERFAMILY
SSF47923
259 376 118 5.75E-33
IPR035969

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

Unable to find any GO terms for the transcript with the identifier.

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Expression data

Expression pattern

Expression pattern of LotjaGi6g1v0038900.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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