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| Field | Value |
|---|---|
| Gene ID | LotjaGi6g1v0053600 |
| Transcript ID | LotjaGi6g1v0053600.1 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Glucan 1,3-beta-glucosidase; TAIR: AT1G13130.1 Cellulase (glycosyl hydrolase family 5) protein; Swiss-Prot: sp|Q96V64|EXG_BLUGR Glucan 1,3-beta-glucosidase; TrEMBL-Plants: tr|I3SE04|I3SE04_LOTJA Uncharacterized protein; Found in the gene: LotjaGi6g1v0053600 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr6:9606267..9611727) extracted from Lotus japonicus Gifu genome v1.2.
TGATAAAATATACTTTATTGATTCAGTCATCAATAATTAATGATCTGTTTGTTTTATTGGTTGTATGATTAAACGGCTAC TCCGGCAAAGAATTATTTTTCAAAAACTAAAAATTGATAATTTGATTCCTTAAACATTTAGTGTTCAATTTTGGCCGATG CCTATGGAGAAAAATTTATTGGGAGATACCTAGTCATTTAATGTGATCGATGATATTAGTCTCATGGCTATCGTGTGTGA AGATACTTTGAGGAATAAGAAAGAAAAATTAATCCGGAATGTGTAACTGTCCACCAGAAGCTTTAACGCTTTAACCAGAC AGGCTGTAAGATACCTTACTTTCCTAATTAAATTATTCATTTTACATGAGACACACCAGAATGCTTAATTTTTTAGAAAG TGGCTTACAAATGGCAACAGACCTAGTAGGAAGTAGATAATTACTAGAATGCACCTAATATTCAAGTAAACTCTAAGCAA AGACAATTGCACAAAAACAATTTATACAGTACACAAGAGAGAATGTCTCATCACTCCACCGTGCAAGCACTGTGTAATAA GATGGGCAACCAATTCTTCTACACAAATTTGCTATTCATTTTCTACATCTCATGCCATTATTATGTTTCTGTTGCTCAAA CTGAAAATTCCACTTTGTCAATCAAAGCTGTGAATCTTGGAAATTGGCTTGTCATAGAAGGGGCGATGAAACCTTCTCTC TTTGATGGAATAACCAACAAAGATCTTTTGGTACATTGATCTCTTTATTCTATCATATTTGTATCTTTTGGCAATGCCTT CTATTTCCAGTATTTCTATCAATAAATTTTATATTACTAGTGTAGGACTTGTTTATTTTTTTTTATAGTTTAGCCTCCTA GTTCCCTGATGGTAGCATTGATTTGGTCATTTTCAGGATGGAACTCAAGTTCAGTTCATGTCTGCCAAGTTACAGAAGTA TCTCTGCGCAGAACATGGGGGAGGATCCATTGTTGTTGCTAACCGCACCAAAGCTTTGAGTTGGGAAACTTTCAGGGTTC GTTCCTCTTTCATCATGTAGAGGGGAAACTTTCAGCCACTAATATGAGTTTTCATTATCTATTTGTAACATTTATTTTGT GAAACTATGAACAATGCAGTTGTGGAGGGTCAATGAATCAGCCTTCAATTTCAGAGTGTCTAACAAGCAGTTTGTGGGAT TGGGAAATCAAGCTGGAGCAAACAAATTAGTGGCTGGTTCAGACTTACCTGGCAACATGGAAACATTTCAGATTGTGAGA AATGATGGTGATCCAAAAAAGATTCGCATCAGAGCACCAACTGGTCTGTTTTTACAGGTAAATTGACTTTAGTTATGCTA TTGATCAAATGATGTTGCTGAAGATTTAAACCCTCTCGAATCTAATCTTTTGGGACTGGTTGAAATGTAGTAAACTCTCA CTAACCATATTATGAGTTTTATCAGTGGTAATTGCTTCCAGATTTTGTAATGTTATGTTTTTATAATGTATATCAGGCCA TATCAGAGACTCTAGTGACTGCAGATTATGAAGGATCCAGCTGGGAGGATAATGACCCTTCAGTCTTCAAAATGATAATT TTGAATCACACCATATTAAAAGGCGAATACCAACTTACAAATGGTTATGGCCCAGACAGAGCTCCAACAATCATGCAGGT ACAATATCTGCTTTAAAGAGAACAAGCACCAGCAGTTAAATTTATAGCAGATTTTAATTGATTGATAGAGCTATGCTAGA CATGCAGGATCACTGGAATACATATATCACTGAAGATGATTTCAGATTCATATCAACAAATGGCTTAAATGCTGTTAGAA TTCCAGTTGGGTGGTGGATAGCTCAAGACCCAACACCACCAAAGCCATTTGTAGGAGGATCCTTGGAAATACTTGACAAT GCATTCACATGGGCACAGTAAGACTAATTATTTTATACCATGAAATAAAATAGACATTAATCTCTCAATCATCATGACTC ATCATAATTAATGTGATTGCAGAAAGTATGGATTGAAGGTAATTGTGGACCTGCATGCTGTTCCAGGTTCACAAAATGGA CAACCTCACAGTGCAACAAGAGATGGATATAGAGAATGGGGAGATTCATACATACCTGATACTGTGGCAACCATAGATTT CCTAGCTGAAAGGTTTAATTTAAATTAAATGTCCCTTTTAATCTTCTATAAAGTTATATTCTATTCATAAACACACTACA TTAGTTTTTTCTTTTGGTCAATACACTATATTAGTTTTGAATGTTAACTTTATGCCTTATCAGAATTGCTTATAGTAACT CCTAAGGATTTGTTTGTTTGGAATGTGTCACTATTATCTGACCTCTAAAGATTGCTCCTAAACCCACTAACTCTACAATT GTTCTTCAGATATGCTGACAGTGAAACACTACTTGCAATAGAGCTGATGAATGAGCCTCAAGGCGTTAATTTGCAAAGCC TTAAAAAGTATTACCAAGCAGGTTATGAAGCAGTAAGAAACCACTCATTGAGTGCTTATGTGATCATGTCTAACCCTCTG GATAGAGATTCAAGAGTGCTCCTGCAATTTGCTGGAGCTTTCAGTGGAGTAGTCATTGATGTGCATTACTACAATTTCTT TTCGGATAAATTCTCCAAAATGAATGTGCAGCAGAACATCGATTATATTAAAAAATACAGAGCTTCAGATCTTAGCTCTC TTACCACATCTTATGGACCCCTCGTATTTGTAGGCAAGTATTGTACTTCTACATAATCAAATGCTTAGATTTTGTTATGG AATTGAGATAAATTAAAGAAATGTATAGAATAACAGATTGAATTGGAATCTGACAGGGGAGTGGAGTGGTGCCTGGAAAG TGCAGAATGCATCAAAGAAAGATTACCAACAATTTTTGCAGATTCAAAAGGAGGTATACTCTCATGCCACGTTTGGATGG GCTTATTGGGCGTACAAATGTGACTCTAACTACTGGAGCCTCAAGTGGATGATTGACAACAATTATGTCAAGTTTTAGTG TGTTATAGATGGCAATTGAAATAGGTGCAAGTGTAATTTAAAAAATAAGATAAGATGCTACTGTCATATATGTAACCTAC ACTTGAAAAACATGTAATTTACAACCAACTAGTGCTTTTTAGTTAATGAACTTCTAAACAATCATTGGCTAAATATTATG TGCAACTTACTGCACTTTCAGCTACTTCATGGAAATATTCATTATTTGTTCACTAGTGACAACATTGAGCATCAGACCTG GATAATTAACATGGCTCCATCATTATTCATGGTCGCTGCTTCAAGCATGTCTAGAAATCCTTCAACATTTATTCTAAAGC CAAAATCGATACTGGGGAGAAGCTTCAGCGAGTAACTTCTGGGCGCCAGAATTGATTCTGAGGAAAAATAAGTTGATCTA TAATGATTTTACAACTATTTACAAAGCAACTGGTTTGAAGCCAATCTCTATGGATTTCCTCACAGCATCAACAACCAGTT GAGTCTTTCTACTAATTTCAGGCCATTTGGAAGAGGGTTTGGACCCGCAATCTCTAATGCTTGTAGCAAGCCTAGCAAGT TCTTGCACCATGAGAGCCTCTTGTGGGAGCTCATTGTCCACATGAACTTCCTCTGGTCTCACATTCCACCCAATGTGAAG GTCCACAAACTTTGCACCAAATGTGAAGTCAAAGGAAGCATCAGTCTCCTGATAGGGGATTATGAAGTCCTTGAGATGCA GGGACCCATTGGAACCACAAAGGCTCAAGTCCATGGATGTGTGAGAAAGAAATGAGCAGTGAACTGTTGCAACTGCTTGG TCTGCTGGTTGTTGGCCTTGGCACCACTGCAGAGAGGCTGTGAAAGACAGTATGACTCCAGCAGCATTTCGGGTGATGTC TGGAAGAGCGGTGACCGTGGTTGGGAGGTTGTAGCTCTTTGCCCACAAAGAAGCACCAATGCAATACCAGCCCAAGTCAC CAAGTGCACCAAGGCCATCCAAGTCTGGCTTTACTCTGATGTTGTTCTCTAAGAATTCGGGTGGTACTGGCATTGTTGAA GTGCTATGGATCTTCAATAAAACATTGTAAATTATGTTATACAATGTAAGATTATAGGTACAAAACCTGAACTAAAACTG AATACAAAGTTACTAAACCAAAAATCAACAGCATTGCTAGTATTTAGTACGGGCCTTGTCTCTACGAATTGTAAGAATTG TATTTTCAACCAATCAGAGATGTTCTTTGCCGGAAATCATGGTGGGTGGTTAATAAAAAACTTTAAATACACCCTTTTGC TTCACTTCATATGTTAACTTCATTTACATAATTGGTGTGCTTGTATTTCTGTGGCGAGAGAAATTTGAATGTGTTTTTAT CAATTCCTGTCTCTTGTTGTTGGAATAACTTGTGTCATTGAAATGAATGTACATTTGACTAATTCTACATAAATATAATC ACATTGTCAATATCATGGATTTCACTCCTCTAAAGAGACTGAACTCACTTTAAACAGTAAAGTAAGTTATTACACCATTA GTAGTGATTATCTAATTTAAAAAGTAAATAAAAACAACTTAATTAAAAAAATCTTAACCAATGTGCTAAAGTGACTGGTT AAAATATAAATTTAACATTATCTTAATTAATTAATTAACTAATTGTGGTTTGTGCCTGATGATAGTGAATTTCAATCAAG TGACGCATGTAACAGGTCCTTACAAACTGAACTGGTCCAACAGTGGTGGAATGAGAAAGAGAGAGCAATTGTTCCATGTG GGCAGTCCTAGGGTGATGAAGCCACATACTCCCATCCATGAACTGTACGCCGTTGGATTCGCACGCTTCTAAGATCAGAT CTAGCTGCGCCACGTCAAGCGCCGCGGGCTTCTCCACCAGCACGTGCTTCCCCTTACTCGCCGCCGCAACCGCCCACCGC ACGTGGAGGCTCGTAGGGAGGGGAATGTACACGGCGTCCACGCCGGGGTCCTCCACCACCTCGTCGTAGCTGCCGTAGAT TCTCACGGTGGCTGGTAACTGATTCTCGGCGGCGAAGGTGTTGGCCTTTTGCTTGGAGCGGCTGGCGATGGCGGAGAGTG TGGCGTTGGGGGCGAGAGCAATGGCTCGAGCTAGTTTTCTGGCGATGTTGGCGCAGCCTATGATGCCGAAACGAATCGTT TCGTTCTCGGCCATGTTATGGGTGTCGTAATTTTGGAAGAGCTTAGTTTAAGATAGCAGTAGCACCATGGTTAGCTTCAC GTGTTTGTGGAAAAAGGATAGGATAGTGTTCATTCCGATACCACAAATTAAAAAATGAAATAAAAATTGGGGTGGAGTTT CTAATTTCTTTTGGTTGAGTGATGTTATGGTAGTTTATGGAAAATAATTGTTATTAGTAGAAAATGATTGTTGATATTAC TTATTAGTTATTACTAGTTAT
CDS sequence (LotjaGi6g1v0053600.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTCTCATCACTCCACCGTGCAAGCACTGTGTAATAAGATGGGCAACCAATTCTTCTACACAAATTTGCTATTCATTTT CTACATCTCATGCCATTATTATGTTTCTGTTGCTCAAACTGAAAATTCCACTTTGTCAATCAAAGCTGTGAATCTTGGAA ATTGGCTTGTCATAGAAGGGGCGATGAAACCTTCTCTCTTTGATGGAATAACCAACAAAGATCTTTTGGATGGAACTCAA GTTCAGTTCATGTCTGCCAAGTTACAGAAGTATCTCTGCGCAGAACATGGGGGAGGATCCATTGTTGTTGCTAACCGCAC CAAAGCTTTGAGTTGGGAAACTTTCAGGTTGTGGAGGGTCAATGAATCAGCCTTCAATTTCAGAGTGTCTAACAAGCAGT TTGTGGGATTGGGAAATCAAGCTGGAGCAAACAAATTAGTGGCTGGTTCAGACTTACCTGGCAACATGGAAACATTTCAG ATTGTGAGAAATGATGGTGATCCAAAAAAGATTCGCATCAGAGCACCAACTGGTCTGTTTTTACAGGCCATATCAGAGAC TCTAGTGACTGCAGATTATGAAGGATCCAGCTGGGAGGATAATGACCCTTCAGTCTTCAAAATGATAATTTTGAATCACA CCATATTAAAAGGCGAATACCAACTTACAAATGGTTATGGCCCAGACAGAGCTCCAACAATCATGCAGGATCACTGGAAT ACATATATCACTGAAGATGATTTCAGATTCATATCAACAAATGGCTTAAATGCTGTTAGAATTCCAGTTGGGTGGTGGAT AGCTCAAGACCCAACACCACCAAAGCCATTTGTAGGAGGATCCTTGGAAATACTTGACAATGCATTCACATGGGCACAAA AGTATGGATTGAAGGTAATTGTGGACCTGCATGCTGTTCCAGGTTCACAAAATGGACAACCTCACAGTGCAACAAGAGAT GGATATAGAGAATGGGGAGATTCATACATACCTGATACTGTGGCAACCATAGATTTCCTAGCTGAAAGATATGCTGACAG TGAAACACTACTTGCAATAGAGCTGATGAATGAGCCTCAAGGCGTTAATTTGCAAAGCCTTAAAAAGTATTACCAAGCAG GTTATGAAGCAGTAAGAAACCACTCATTGAGTGCTTATGTGATCATGTCTAACCCTCTGGATAGAGATTCAAGAGTGCTC CTGCAATTTGCTGGAGCTTTCAGTGGAGTAGTCATTGATGTGCATTACTACAATTTCTTTTCGGATAAATTCTCCAAAAT GAATGTGCAGCAGAACATCGATTATATTAAAAAATACAGAGCTTCAGATCTTAGCTCTCTTACCACATCTTATGGACCCC TCGTATTTGTAGGCAAGTATTGTACTTCTACATAA
Protein sequence (LotjaGi6g1v0053600.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MSHHSTVQALCNKMGNQFFYTNLLFIFYISCHYYVSVAQTENSTLSIKAVNLGNWLVIEGAMKPSLFDGITNKDLLDGTQ VQFMSAKLQKYLCAEHGGGSIVVANRTKALSWETFRLWRVNESAFNFRVSNKQFVGLGNQAGANKLVAGSDLPGNMETFQ IVRNDGDPKKIRIRAPTGLFLQAISETLVTADYEGSSWEDNDPSVFKMIILNHTILKGEYQLTNGYGPDRAPTIMQDHWN TYITEDDFRFISTNGLNAVRIPVGWWIAQDPTPPKPFVGGSLEILDNAFTWAQKYGLKVIVDLHAVPGSQNGQPHSATRD GYREWGDSYIPDTVATIDFLAERYADSETLLAIELMNEPQGVNLQSLKKYYQAGYEAVRNHSLSAYVIMSNPLDRDSRVL LQFAGAFSGVVIDVHYYNFFSDKFSKMNVQQNIDYIKKYRASDLSSLTTSYGPLVFVGKYCTST
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 17 | 17 | - | – | |
| PANTHER | 14 | 461 | 448 | 8.0E-261 | ||
| PANTHER | 14 | 461 | 448 | 8.0E-261 | – | |
| Phobius | 18 | 35 | 18 | - | – | |
| TMHMM | 19 | 38 | 20 | - | – | |
| Phobius | 36 | 398 | 363 | - | – | |
| SUPERFAMILY | 44 | 460 | 417 | 2.51E-72 | ||
| Gene3D | 69 | 202 | 134 | 5.5E-14 | – | |
| SUPERFAMILY | 79 | 196 | 118 | 3.82E-17 | ||
| Gene3D | 203 | 464 | 262 | 3.2E-68 | – | |
| Pfam | 237 | 452 | 216 | 2.0E-23 | ||
| Phobius | 399 | 417 | 19 | - | – | |
| Phobius | 418 | 464 | 47 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Hydrolase activity, hydrolyzing O-glycosyl compounds | Catalysis of the hydrolysis of any O-glycosyl bond. | ||
| Biological process | Carbohydrate metabolic process | The chemical reactions and pathways involving carbohydrates, any of a group of organic compounds based of the general formula Cx(H2O)y. Includes the formation of carbohydrate derivatives by the addition of a carbohydrate residue to another molecule. | ||
| Biological process | Actin filament organization | A process that is carried out at the cellular level which results in the assembly, arrangement of constituent parts, or disassembly of cytoskeletal structures comprising actin filaments. Includes processes that control the spatial distribution of actin filaments, such as organizing filaments into meshworks, bundles, or other structures, as by cross-linking. | ||
| Molecular function | Actin filament binding | Interacting selectively and non-covalently with an actin filament, also known as F-actin, a helical filamentous polymer of globular G-actin subunits. |
Expression pattern of LotjaGi6g1v0053600.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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