Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message
| Field | Value |
|---|---|
| Gene ID | LotjaGi6g1v0082700 |
| Transcript ID | LotjaGi6g1v0082700.2 |
| Related isoforms 2 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Proteasome subunit alpha type; TAIR: AT2G27020.1 20S proteasome alpha subunit G1; Swiss-Prot: sp|O24362|PSA3_SPIOL Proteasome subunit alpha type-3; TrEMBL-Plants: tr|I3STC4|I3STC4_LOTJA Proteasome subunit alpha type; Found in the gene: LotjaGi6g1v0082700 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr6:16121050..16124010) extracted from Lotus japonicus Gifu genome v1.2.
ATGAGCAGCATTGGAACTGGTTACGATCTATCGGTCACTACTTTCTCTCCAGATGGACGCGTCTTCCAGATTGAGTACGC CGCTAAAGCCGTCGACAACAGCGGGTAACTTTTCAAATCCTTCGTTTTCTCGAATCTCGTTTTTTGATTCATAGTTTTGA AATAGAAACTGTTTTTGTTAAAATAATGATGGGGTTTCGTTGTTCTTGAGAAATTGTTTGATGGGGTTTTGAAAATTGAT CGGGTTTTGTGTTTTTTTTCTAGGGTTTAGATTTTTTTGTTGTTGCTGATGATCTTAGATTTGAAACATTGTTGCAGGAC TGTGATTGGGATCAAATGCAAAGATGGGATTGTGTTGGTAGGTTATTCTGAGATTTGTCGGCATCATGTTTTTTTTTTTT TTAATTTTTAATTTTAATTTTAATTTTTATGAGTTGGGTTTGGTTTTTTAGGGTGTGGAGAAGCTTATTCCGTCGAAAAT GATGCTACCGGGTTCCAATAGAAGAATACACTCTGTCCATCGCCACTCTGGGATGGTACTTTCTCATTCACATTTTATTA TTTTTGCATATCTTGTTACTTTTTCCCCTATTTTCTGTTTTGCTCTTTGTTTTGACTTTTGTAGTGACCACAAAGAGCTT TGCATAAAAGTGATGAAACTTACTTGCCTTTTTTTTACAAGTCTGACCACTAATTGCTAGTGCTGAAGTGGTGTGAAGAC TGTACATATTGATATTATTAGCTCTAGCACTGCATGATATGTTAGATCCGTAGCATTAATTTGAAGTGGGGTTTTCTTGT TATAATTATTGGGTGTATATACTGATGAGTTTTTTTGTATGTTTTTGTACCTTGGCTTGTCCTATCCAATGTGTTAAGCA TAACGAATCTTAGTTCTTAGATTAACAGTTGACATCACATACTATGCATGGGTGACCAAATTGGGAACATCAATTCAAGG GTGTTTTTTGTGTTCTGTAAATCGGAAGGGCATATTAAATCATTATGTAATGAGATAAATTATAGTTACTGAGAAATTAT TGTGGGCACCTGGTGCAAAACTCTAAAGTAGCCAGCATATTTTAATGGAGTGAAAGTACTGCATTGGCAATACTTTTCTG ATAATTAGTTTTAGTGCATCGTTTCATTTCTCACGTTCTGATCGCTTTCGTGCTTTGAACTCCTTTTGATGTATGCATGA ATCTTCAAATTTTAGGCTGTAGCAGGATTAGCAGCAGATGGCAGGCAAATTGTTGCTAGGGCTAAGGCTGAAGCAAATAA CTATGACAGGTTTGCTCTATTCCCTTGCAACATCTAAATGTTGACTCCCTGCCTCCTCTTTTTTTCAAATCTAAATGTTG ACTTCTTTTATGTTTTATTATATTTAGTCGTTTACTGGTTAAGTACTCTCTCCATCTTTTGGATTGGATGGACAAGGACT GCTGCAATAGAGGATAGAGGGACTACTATAAAGCCTGTAGTGTAAAATAGTGTAACCTTGTCTTCATTTTGAAGTCACGA AAGAGTTTAGTAGCTAGAAATTTTCACTAATTATTAGTTTGGCCGGACTAAGCGTAACTCTATGCATTGACTCAACCATG TTTTTACCTTTGAAGTCTACACTATATCGACACCCACAGTTCAGTTTGTCTGAAAATTCTGAAAAAATATCTAAAACTAT TTTCAATTTTACTGCACTACAACTCGCTAAACAAGAGTCGGTAACATATTTTTCTCCTAATAGATCACTTGTCACCCTGA AATAGTCTACTTTTCTTTGTAGCCTCAGTCCAAACGAAGAAAGTGTCAAATCATTTTAGGTTACAATAAGCCCATATTAA CTGAGTTAAGATTATGATCACTTCTTGAGTGTCTAGAGAAACCAATTACCTTTGGCCTAGCAAAGTTTAAGCTGGTATGA GATGAAAATCAGGATTCTCAATTTTGTGGCATCCTAGCATTCCCAAAACTGATGACTACTTGCTGCACTAGATGCTCACA GGACGCACTAAGTGATAACAATTTATCCATTGTTAGGCTTTTACTGATATAAATCGGATTATTAGTTGTTTTGGGGGGTG AAACAATTTACACCTCCAAATAGCTCATGATTCTCCAACATCTAAATTAATGCTGATGTGTGGCCTGACATTGGAAATTT AAAATGACGATCCTGCTAGAAGCCTTGCATATGCCCTTGTATTTTCAATTGGGTCACTGGTAAAGGATGTGAAAAATTGT TGAATCCTGAAACTGCTGGTTTTGATGAGCATGCTAACATTTTCTGTCTATTTAAAGTTACTAACGTGCAAATTGTAAAT TTGGCATTCTATTTAGTGTCGCATGAAGTATAAGAATCTCTTGATTAAGGTTTTATCAAATGTTTTTGCTCAATTTTTTA GAAGAAAAGATGTTTATTCTGGCATGTATTTCTTTTCAGCACGTACGGTGAACCTATTCCTGTTAAGGAACTTGCTGATC GTGTGGCTAGTTATGTGCACCTCTGTACGTTATATTGGTGGCTCAGGTTAAAGAGACTGACCTCTTGTAGTCATTTGAAG TTGTATTTCTTTATTTTTCATATTAATAACAGTTCTGTAATGTTGGTGCAGACCTTTTGGATGTGGTGTCATCCTAGGAG GTTATGACAGAGATGGACCACAGTTGTACATGGTCGAACCTTCCGGTGTTTCCTATGTAGGTCTTTTTTTTGTTATTTGA AAGCAACTTCTGAACTTCTGATTGTTTTCTGAGCTATTAATATTCTCATTTGGCAGTTCACTATTACTGATTTGTTTGTT TTGGTATGTTATAGAGGTATTTTGGTGCTGCAATTGGGAAGGGCAGACAGGCTGCTAAAACGTAAGTGAATGAATATACA TTAATTATAGTAATGATGTTCTATACTAAAACAATCCTTTCTATGGTCTCTTCTGTGGATGGTATTATCTTCTATTTGCA T
CDS sequence (LotjaGi6g1v0082700.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGAGCAGCATTGGAACTGGTTACGATCTATCGGTCACTACTTTCTCTCCAGATGGACGCGTCTTCCAGATTGAGTACGC CGCTAAAGCCGTCGACAACAGCGGGACTGTGATTGGGATCAAATGCAAAGATGGGATTGTGTTGGGTGTGGAGAAGCTTA TTCCGTCGAAAATGATGCTACCGGGTTCCAATAGAAGAATACACTCTGTCCATCGCCACTCTGGGATGGCTGTAGCAGGA TTAGCAGCAGATGGCAGGCAAATTGTTGCTAGGGCTAAGGCTGAAGCAAATAACTATGACAGCACGTACGGTGAACCTAT TCCTGTTAAGGAACTTGCTGATCGTGTGGCTAGTTATGTGCACCTCTGTACGTTATATTGGTGGCTCAGACCTTTTGGAT GTGGTGTCATCCTAGGAGGTTATGACAGAGATGGACCACAGTTGTACATGGTCGAACCTTCCGGTGTTTCCTATAGGTAT TTTGGTGCTGCAATTGGGAAGGGCAGACAGGCTGCTAAAACGTAA
Protein sequence (LotjaGi6g1v0082700.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MSSIGTGYDLSVTTFSPDGRVFQIEYAAKAVDNSGTVIGIKCKDGIVLGVEKLIPSKMMLPGSNRRIHSVHRHSGMAVAG LAADGRQIVARAKAEANNYDSTYGEPIPVKELADRVASYVHLCTLYWWLRPFGCGVILGGYDRDGPQLYMVEPSGVSYRY FGAAIGKGRQAAKT
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 174 | 174 | 1.8E-116 | ||
| PANTHER | 1 | 174 | 174 | 1.8E-116 | – | |
| Gene3D | 1 | 174 | 174 | 9.9E-71 | ||
| CDD | 5 | 174 | 170 | 4.27147E-120 | – | |
| SUPERFAMILY | 6 | 174 | 169 | 1.42E-63 | ||
| SMART | 8 | 30 | 23 | 5.5E-10 | ||
| Pfam | 8 | 30 | 23 | 8.6E-14 | ||
| ProSitePatterns | 8 | 30 | 23 | - | ||
| ProSiteProfiles | 23 | 174 | 152 | 63.229 | ||
| Pfam | 32 | 174 | 143 | 8.2E-46 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Endopeptidase activity | Catalysis of the hydrolysis of internal, alpha-peptide bonds in a polypeptide chain. | ||
| Molecular function | Threonine-type endopeptidase activity | Catalysis of the hydrolysis of internal peptide bonds in a polypeptide chain by a mechanism in which the hydroxyl group of a threonine residue at the active center acts as a nucleophile. | ||
| Cellular component | Proteasome core complex | A multisubunit barrel shaped endoprotease complex, which is the core of the proteasome complex. | ||
| Biological process | Ubiquitin-dependent protein catabolic process | The chemical reactions and pathways resulting in the breakdown of a protein or peptide by hydrolysis of its peptide bonds, initiated by the covalent attachment of a ubiquitin group, or multiple ubiquitin groups, to the protein. | ||
| Cellular component | Proteasome core complex, alpha-subunit complex | The proteasome core subcomplex that constitutes the two outer rings of the proteasome core complex. An example of this component is found in Mus musculus. | ||
| Biological process | Proteolysis involved in cellular protein catabolic process | The hydrolysis of a peptide bond or bonds within a protein as part of the chemical reactions and pathways resulting in the breakdown of a protein by individual cells. |
Expression pattern of LotjaGi6g1v0082700.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
Loading expression data from ljgea-geneid. Please wait…