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TREX

Transcript Explorer
for L. japonicus reference genomes

The Transcript Explorer tool can be used to search for candidate Lotus genes using user-defined keywords, or to comb a specific genomic interval—a combination of chromosome and position range—for genes/transcripts of interest.

Repeat Search

  • IPR023332
Separate each keyword, or gene/transcript ID, with a comma or tab. Spaces are not accepted as delimiters due to their potential use in boolean searches.
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We have found 35 results. Now displaying 1 of 1 with 50 rows per page. This search has taken 6.965s to perform.

Transcript Name Description Chr Start End Strand Domain predictions GO predictions
Lj0g3v0069859.1
n.a. PREDICTED: proteasome subunit alpha type-7 [Vitis vinifera] gi|225428005|ref|XP_002278162.1| chr0 25377024 25380805 +
2 domain predictions
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Lj0g3v0197349.1
n.a. proteasome subunit alpha type-6 [Glycine max] gi|351721962|ref|NP_001238251.1| chr0 96235876 96241173 -
2 domain predictions
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Lj0g3v0363779.1
n.a. 20S proteasome alpha subunit G1 [Theobroma cacao] gi|508785767|gb|EOY33023.1| chr0 191950926 191964896 -
2 domain predictions
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Lj0g3v0363779.2
n.a. PREDICTED: proteasome subunit alpha type-3-like [Cicer arietinum] gi|502091750|ref|XP_004489625.1| chr0 191961956 191964896 -
2 domain predictions
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Lj1g3v2373670.1
n.a. PREDICTED: proteasome subunit alpha type-4-like [Cicer arietinum] gi|502134137|ref|XP_004502013.1| chr1 27994202 27994529 -
2 domain predictions
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Lj1g3v2375870.1
n.a. PREDICTED: proteasome subunit alpha type-4-like isoform 1 [Glycine max] gi|356496249|ref|XP_003516981.1| chr1 28043474 28049778 -
2 domain predictions
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Lj1g3v4916360.1
n.a. PREDICTED: proteasome subunit alpha type-2-A-like [Cicer arietinum] gi|502153994|ref|XP_004509539.1| chr1 59552152 59574737 -
2 domain predictions
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Lj2g3v1979680.1
n.a. PREDICTED: proteasome subunit alpha type-7-like [Glycine max] gi|356559270|ref|XP_003547923.1| chr2 28763917 28767607 -
2 domain predictions
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Lj3g3v0951030.1
n.a. PREDICTED: proteasome subunit alpha type-2-A-like [Cicer arietinum] gi|502088303|ref|XP_004488789.1| chr3 12408906 12424236 +
2 domain predictions
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Lj5g3v0108300.1
n.a. PREDICTED: proteasome subunit alpha type-1-B-like [Cicer arietinum] gi|502126081|ref|XP_004499172.1| chr5 976723 979915 -
2 domain predictions
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Lj5g3v2240990.1
n.a. 20S proteasome alpha subunit E2 isoform 2 [Theobroma cacao] gi|508780133|gb|EOY27389.1| chr5 32260956 32265615 +
2 domain predictions
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LotjaGi1g1v0445900.1
n.a. Proteasome subunit alpha type; TAIR: AT3G22110.1 20S proteasome alpha subunit C1; Swiss-Prot: sp|O81148|PSA4A_ARATH Proteasome subunit alpha type-4-A; TrEMBL-Plants: tr|I3S0L1|I3S0L1_MEDTR Proteasome subunit alpha type; Found in the gene: LotjaGi1g1v0445900 LjG1.1_chr1 94482369 94487305 -
2 domain predictions
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LotjaGi1g1v0445900.2
n.a. Proteasome subunit alpha type; TAIR: AT3G22110.1 20S proteasome alpha subunit C1; Swiss-Prot: sp|O81148|PSA4A_ARATH Proteasome subunit alpha type-4-A; TrEMBL-Plants: tr|I3S0L1|I3S0L1_MEDTR Proteasome subunit alpha type; Found in the gene: LotjaGi1g1v0445900 LjG1.1_chr1 94482484 94486908 -
2 domain predictions
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LotjaGi1g1v0445900.3
n.a. Proteasome subunit alpha type; TAIR: AT3G22110.1 20S proteasome alpha subunit C1; Swiss-Prot: sp|O81148|PSA4A_ARATH Proteasome subunit alpha type-4-A; TrEMBL-Plants: tr|I3S0L1|I3S0L1_MEDTR Proteasome subunit alpha type; Found in the gene: LotjaGi1g1v0445900 LjG1.1_chr1 94482505 94485606 -
2 domain predictions
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LotjaGi1g1v0445900.4
n.a. Proteasome subunit alpha type; TAIR: AT3G22110.1 20S proteasome alpha subunit C1; Swiss-Prot: sp|O81148|PSA4A_ARATH Proteasome subunit alpha type-4-A; TrEMBL-Plants: tr|I3S0L1|I3S0L1_MEDTR Proteasome subunit alpha type; Found in the gene: LotjaGi1g1v0445900 LjG1.1_chr1 94482756 94483805 -
2 domain predictions
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LotjaGi1g1v0445900.5
n.a. Proteasome subunit alpha type; TAIR: AT3G22110.1 20S proteasome alpha subunit C1; Swiss-Prot: sp|O81148|PSA4A_ARATH Proteasome subunit alpha type-4-A; TrEMBL-Plants: tr|I3S0L1|I3S0L1_MEDTR Proteasome subunit alpha type; Found in the gene: LotjaGi1g1v0445900 LjG1.1_chr1 94483053 94483805 -
2 domain predictions
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LotjaGi1g1v0445900.6
n.a. Proteasome subunit alpha type; TAIR: AT4G15165.1 N-terminal nucleophile aminohydrolases (Ntn hydrolases) superfamily protein; Swiss-Prot: sp|F4JJE5|PSA4B_ARATH Putative proteasome subunit alpha type-4-B; TrEMBL-Plants: tr|I3S0L1|I3S0L1_MEDTR Proteasome subunit alpha type; Found in the gene: LotjaGi1g1v0445900 LjG1.1_chr1 94483053 94483805 -
2 domain predictions
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LotjaGi1g1v0445900.7
n.a. Proteasome subunit alpha type; TAIR: AT3G22110.1 20S proteasome alpha subunit C1; Swiss-Prot: sp|O81148|PSA4A_ARATH Proteasome subunit alpha type-4-A; TrEMBL-Plants: tr|I3S0L1|I3S0L1_MEDTR Proteasome subunit alpha type; Found in the gene: LotjaGi1g1v0445900 LjG1.1_chr1 94483053 94483805 -
2 domain predictions
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LotjaGi1g1v0767900.1
n.a. Proteasome subunit alpha type; TAIR: AT1G16470.1 proteasome subunit PAB1; Swiss-Prot: sp|O23708|PSA2A_ARATH Proteasome subunit alpha type-2-A; TrEMBL-Plants: tr|I3SFE3|I3SFE3_MEDTR Proteasome subunit alpha type; Found in the gene: LotjaGi1g1v0767900 LjG1.1_chr1 134061462 134068685 -
2 domain predictions
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LotjaGi1g1v0767900.2
n.a. Proteasome subunit alpha type; TAIR: AT1G16470.1 proteasome subunit PAB1; Swiss-Prot: sp|A2YVR7|PSA2_ORYSI Proteasome subunit alpha type-2; TrEMBL-Plants: tr|A0A0S3TCR9|A0A0S3TCR9_PHAAN Proteasome subunit alpha type; Found in the gene: LotjaGi1g1v0767900 LjG1.1_chr1 134063224 134068411 -
2 domain predictions
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LotjaGi2g1v0410600.1
n.a. Proteasome subunit alpha type; TAIR: AT5G66140.1 proteasome alpha subunit D2; Swiss-Prot: sp|Q9SXU1|PSA7_CICAR Proteasome subunit alpha type-7; TrEMBL-Plants: tr|A0A0L9TPU8|A0A0L9TPU8_PHAAN Proteasome subunit alpha type; Found in the gene: LotjaGi2g1v0410600 LjG1.1_chr2 90742863 90746696 +
2 domain predictions
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LotjaGi3g1v0135900.1
n.a. Proteasome subunit alpha type; TAIR: AT1G16470.1 proteasome subunit PAB1; Swiss-Prot: sp|O23708|PSA2A_ARATH Proteasome subunit alpha type-2-A; TrEMBL-Plants: tr|I3SFE3|I3SFE3_MEDTR Proteasome subunit alpha type; Found in the gene: LotjaGi3g1v0135900 LjG1.1_chr3 17398837 17414691 +
2 domain predictions
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LotjaGi3g1v0198400.1
n.a. Proteasome subunit alpha type; TAIR: AT3G22110.1 20S proteasome alpha subunit C1; Swiss-Prot: sp|O81148|PSA4A_ARATH Proteasome subunit alpha type-4-A; TrEMBL-Plants: tr|A0A0B2P141|A0A0B2P141_GLYSO Proteasome subunit alpha type; Found in the gene: LotjaGi3g1v0198400 LjG1.1_chr3 29000556 29004965 -
2 domain predictions
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LotjaGi3g1v0198400.2
n.a. Proteasome subunit alpha type; TAIR: AT3G22110.1 20S proteasome alpha subunit C1; Swiss-Prot: sp|O81148|PSA4A_ARATH Proteasome subunit alpha type-4-A; TrEMBL-Plants: tr|A0A0B2P141|A0A0B2P141_GLYSO Proteasome subunit alpha type; Found in the gene: LotjaGi3g1v0198400 LjG1.1_chr3 29001335 29002250 -
2 domain predictions
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LotjaGi3g1v0198400.3
n.a. Proteasome subunit alpha type; TAIR: AT3G22110.1 20S proteasome alpha subunit C1; Swiss-Prot: sp|O81148|PSA4A_ARATH Proteasome subunit alpha type-4-A; TrEMBL-Plants: tr|A0A0B2P141|A0A0B2P141_GLYSO Proteasome subunit alpha type; Found in the gene: LotjaGi3g1v0198400 LjG1.1_chr3 29001498 29002250 -
2 domain predictions
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LotjaGi3g1v0198400.4
n.a. Proteasome subunit alpha type; TAIR: AT4G15165.1 N-terminal nucleophile aminohydrolases (Ntn hydrolases) superfamily protein; Swiss-Prot: sp|F4JJE5|PSA4B_ARATH Putative proteasome subunit alpha type-4-B; TrEMBL-Plants: tr|A0A0B2P141|A0A0B2P141_GLYSO Proteasome subunit alpha type; Found in the gene: LotjaGi3g1v0198400 LjG1.1_chr3 29001498 29002250 -
2 domain predictions
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LotjaGi3g1v0323300.1
n.a. Proteasome subunit alpha type; TAIR: AT5G35590.1 proteasome alpha subunit A1; Swiss-Prot: sp|O48551|PSA6_SOYBN Proteasome subunit alpha type-6; TrEMBL-Plants: tr|I3T518|I3T518_LOTJA Proteasome subunit alpha type; Found in the gene: LotjaGi3g1v0323300 LjG1.1_chr3 68841519 68847795 -
2 domain predictions
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LotjaGi3g1v0323300.2
n.a. Proteasome subunit alpha type; TAIR: AT5G35590.1 proteasome alpha subunit A1; Swiss-Prot: sp|O48551|PSA6_SOYBN Proteasome subunit alpha type-6; TrEMBL-Plants: tr|I3T518|I3T518_LOTJA Proteasome subunit alpha type; Found in the gene: LotjaGi3g1v0323300 LjG1.1_chr3 68842496 68847546 -
2 domain predictions
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LotjaGi4g1v0130000.1
n.a. Proteasome subunit alpha type; TAIR: AT5G66140.1 proteasome alpha subunit D2; Swiss-Prot: sp|Q9SXU1|PSA7_CICAR Proteasome subunit alpha type-7; TrEMBL-Plants: tr|A0A0L9TPU8|A0A0L9TPU8_PHAAN Proteasome subunit alpha type; Found in the gene: LotjaGi4g1v0130000 LjG1.1_chr4 19026399 19030732 +
2 domain predictions
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LotjaGi5g1v0014300.1
n.a. Proteasome subunit alpha type; TAIR: AT5G42790.1 proteasome alpha subunit F1; Swiss-Prot: sp|P34066|PSA1A_ARATH Proteasome subunit alpha type-1-A; TrEMBL-Plants: tr|A0A0S3RQB5|A0A0S3RQB5_PHAAN Proteasome subunit alpha type; Found in the gene: LotjaGi5g1v0014300 LjG1.1_chr5 3036281 3040100 +
2 domain predictions
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LotjaGi5g1v0345600.1
n.a. Proteasome subunit alpha type; TAIR: AT3G14290.1 20S proteasome alpha subunit E2; Swiss-Prot: sp|Q9LSU1|PSA5_ORYSJ Proteasome subunit alpha type-5; TrEMBL-Plants: tr|I3S0W6|I3S0W6_LOTJA Proteasome subunit alpha type; Found in the gene: LotjaGi5g1v0345600 LjG1.1_chr5 66214643 66219729 +
2 domain predictions
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LotjaGi5g1v0345600.2
n.a. Proteasome subunit alpha type; TAIR: AT3G14290.1 20S proteasome alpha subunit E2; Swiss-Prot: sp|Q9LSU1|PSA5_ORYSJ Proteasome subunit alpha type-5; TrEMBL-Plants: tr|I3S0W6|I3S0W6_LOTJA Proteasome subunit alpha type; Found in the gene: LotjaGi5g1v0345600 LjG1.1_chr5 66214881 66219096 +
2 domain predictions
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LotjaGi6g1v0082700.1
n.a. Proteasome subunit alpha type; TAIR: AT2G27020.2 20S proteasome alpha subunit G1; Swiss-Prot: sp|O23715|PSA3_ARATH Proteasome subunit alpha type-3; TrEMBL-Plants: tr|I3STC4|I3STC4_LOTJA Proteasome subunit alpha type; Found in the gene: LotjaGi6g1v0082700 LjG1.1_chr6 16120937 16136182 +
2 domain predictions
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LotjaGi6g1v0082700.2
n.a. Proteasome subunit alpha type; TAIR: AT2G27020.1 20S proteasome alpha subunit G1; Swiss-Prot: sp|O24362|PSA3_SPIOL Proteasome subunit alpha type-3; TrEMBL-Plants: tr|I3STC4|I3STC4_LOTJA Proteasome subunit alpha type; Found in the gene: LotjaGi6g1v0082700 LjG1.1_chr6 16121050 16124010 +
2 domain predictions
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LotjaGi6g1v0082700.3
n.a. Proteasome subunit alpha type; TAIR: AT2G27020.2 20S proteasome alpha subunit G1; Swiss-Prot: sp|O24362|PSA3_SPIOL Proteasome subunit alpha type-3; TrEMBL-Plants: tr|I3STC4|I3STC4_LOTJA Proteasome subunit alpha type; Found in the gene: LotjaGi6g1v0082700 LjG1.1_chr6 16121050 16133715 +
2 domain predictions
 –