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| Field | Value |
|---|---|
| Gene ID | LotjaGi6g1v0190000 |
| Transcript ID | LotjaGi6g1v0190000.4 |
| Related isoforms 3 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | WD40 repeat-containing protein; TAIR: AT1G73720.1 transducin family protein / WD-40 repeat family protein; Swiss-Prot: sp|Q8W117|SMU1_ARATH Suppressor of mec-8 and unc-52 protein homolog 1; TrEMBL-Plants: tr|A0A151R5C7|A0A151R5C7_CAJCA WD40 repeat-containing protein SMU1; Found in the gene: LotjaGi6g1v0190000 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr6:48551003..48555985) extracted from Lotus japonicus Gifu genome v1.2.
TCTACTTCGAAAGTGGAATAGTATTTAAGAAATTTAACTTTTGACGACAATTTTTGCAAGAAGAAATATTCAAATGGTCA TTTCCTGCTGTGTCATTGATCGTCAGTCAGACAATCAAATTAATTTGACCTCCTCCTATTTATGTTGCCTATAGAGGTTG TTTTATCCTCTCCTTTCGTATCAAAGACTATCCTTTTATATAAGATCTGTTATTAATCACTGGGTACCCTTCTAATCATG TTGAAAGATACACAACATGAGTACCTTACTCTTTTCTGGTGTCTGCCTGTGTGCTTGTAGTTTGGGACAAAAAGTCATGC AGAATGTGCTTGCTTTTCACCAGATGGGCAGTTTCTCGTATCCTGTTCAGTTGATGGATTTGTTGAGGTATACATAGTTT GATTTGAGACTTTGATTATAAGCAGCTTTCTTCCTGATTTGTGGACATACTTTTCAAGGTTTGGGATTACATAAGTGGAA AGCTGAAGAAAGATCTCCAGTACCAGGCAGATGTGAGTTAGTTTTTATTTGAACTTCTTTATGTGCCAAGAATAGATGTC TTGCATGTAACGGTGAACGAATTTGGGGTATAGCTATTTTGCTGACATCATTCCTGTAAAATTTTGTTAAGCTTTTCAGT TTCTGAACACTTCTTTGCCCTGTCACCTTTGCATTTATAGATGCACTCAAAGCTGTAGAATTGATACTGTTGATTTCTGT TGTCCAATTGGGAGTTATTTCAACTTTGGTCACAAAATGTACTTTTTTGCTTGAACATTAAGTATGCTGGTAGTTCATAT GTAATATATCAAATATTTACACAGATTACACGATTTACTTGAAAGATAGTCTTTTCTTTCATGAATCATGATGAGAAGTC ATGTTTTGGTGATCTCTCTTCTTTCTGGTGTTAGTATGTGTATGAACACATCTGCTTAACTTTTTGTTGTATCTTAAAAC TATCAATATGAACATGGTTACCTCTGGGAGCTAGCTAGTTGTACACTAAGATAATTTATCTCTGTCCCTTATGAAAGGAA AGTTAAATTTACCATAAGTCTAGTCTTTTTTTTGCCTTGGAGATTTTCTGATTCTAAGAACTTGCAGGAGGTATTTATGA TGCATGATGATGCTGTACTTTGTGTGGACTTTAGCAGAGATTCAGAGATGCTGGCATCTGGATCACAAGATGGAAAAATT AAAGTGAGTATTACATCTGGATCACATTGCAATGCAATCTTAACCTTACGCTAGCAAGCCTGCATAGGCTATACTTCTAA ATTCTAGGTTAGAGTCGTGGTCTATAGTATAAATAGGCCCATGTACACAGAATTCATCATGAACGATAACAGGGTTCCAT TTTTCAGACTCCACCCCCAACCCTCTCCTCTTATGATTAAAAAAATTAAAAACAAAAGTATAAATTGGGTGAATATTCAG GTGTATCATTACATGGTAATCAGTTATTATTATATTGTTGTTGCTTACTTGATTTATTTGATTCAGCTGACATGAAGCTT GTGCTCTATTCTTATGGAAAAACTTTAGGTGTCATTCCAGTGAAGTCTTCTCTAAATTGTCTAGAAAAAGAATTGTTTGG TATTGCATTTTAAATTGACATGGACATTAGGCTTTTACTCGAGTGAAAATGGTTTCTACATGGCTTCGAGCTCATTATTT TATTGATTTTTTAATGCTTCTCTTCTGGTAAATTGTGTGTAAAATTTCTCAAACTTGATGGTTTGGAAAGCAAGTTTTCA AATGCCCCATCCCAGTATACAATATTGTAATGCTTGTGGTTGTTTTGCATTAGTTGATAAATTGATAAAATATGGTTGAC TAATCTATGAAAAATTAAAATAACAATAGCACTAATAAGTACAGAGACTATATTCATTACAGCAATGTTAATTGTACCTA AAGCAGAATTAACACTGTTATTTGTGTTCAATACTATATCTGGTCCTACTTTGTCATATCAAATTGTATCTTGTGGTAAG TTGTTCCTTGAATATTGAATATTTGCTGGCTGCAGGTCTTGATAGTGTTGCGATTGTTATTGTAAAAAGTGTTTATGTTT TCACCTTAATTGTTGATGTGAAACTTTAAACTGTATTATTCACATTTCATTTTAGGTATGGCGTATTAGGACTGGTCAAT GCTTGCGGCGTCTTGAACGTGCACATTCCCAAGGTGTTACAAGTCTTTCCTTTTCTCGTGATGGGAGCCAGTTATTAAGT ACTTCATTTGACAGCACAGCAAGGTTTTGTTTATTTATTTTTACTTATTTTGTGTCTTTGATATAAAAAATAATTTCCAG GGTCTTATTTTTCACCTTACACTTCCAACTTCTTAAAAGTTTTTGTAATATGTCATCTTTCTGTTTTTGGGCTTATGACG TGGACTTGAAGTTTCCTCCATAGCTGGGAGGTTTTTGCTTTTATTACTTCTGTTATTACTTTTCAATTCACCTAAAAATA CAATTTCCCTCTGCCTGATAGGGTTTATTTCTGTAAGAAAACCATAATATAATCCAAGTCAAATTCAAAACATAGCATCA CAAGTTCATAAGCCTCATAACATAACATAATGAGCTTTAGATAGTAGTTTAACTAGGGATTCTACTGGAACTGCAAGTGA AGTTACACACTTCTGTGAGATTCTTTATATAGAGCTCATCTCCTTGTTCTAATCTTAATGCATTGGCTTTGCAGTATATT ACCCTTATTAATTGTTTAGCAACTTCTGAATGTGACGGTGCTTCTGTGTAATATAGAATCCATGGCCTTAAGTCCGGAAA GATGTTGAAAGAGTTTCGCGGCCATACCTCTTACGTGAATGATGCAACTTTCACCAACGATGGGAGCCGTGTTATTACGG CATCAAGTGATTGTACAGTCAAGGTGAGTTGGTTGGCAATATACATGAAGCAAGTGCTTTGGTTTGTTGCTAATAAGAAA TGTATTATTTCCTCCTTACTGTAGGTCTGGGATGTGAAGACTACAGACTGCATACAAACTTTTAAGCCACCTCCTCCTTT AAGGGTGTGTCTTTAAACAACTACTGTTGTGGGTTTTTTTCCATTCAGTTTCGCGATATCATCTCCCCTGCAAATTAATT TATTTTGCTTACTTTCTTGTTTCTTTGGACTGTTAGGGAGGTGATGCTTCTGTTAACTCTGTGTACATTTTCCCCAAGAA TGCTGATCACATTGTTGTTTGTAACAAAACGTCATCAATATATATCATGACACTTCAAGGCCAGGTATACATTCAAGTGT GGGTGACTGGAAGTCATTTTGTTTATGCGTAGTTCCACTTCCACCATGTCTCAATATTAGTGTTAAGGCTGTTGTGCCAT TGTTCGTCTTAATGATTTATGTATATTTTGACTTTTGACAAGGAAAAATATATTCTGTGCATTCATGTTGGTAAAATGTT AACATTTACTTTGAGACACACAGATTGGATTAGAGAACTTCATGTCTTACTTTGTTTTCATTTATTTTGATAATGAACGT TTTTTCTTAGGATATATAACCTATATGTTTCTGCATTTTGAGGATAAGTGAATGTATAACTTCTGTCTGAGGTGTATCTG CAATTATCATCACTATTCCGAGCATGGTTTTCTCTGTTAATTGGTGTAGGTTGTCAAGAGTTTCTCATCTGGTAAAAGAG AGGGTGGAGACTTCGTTGCAGCCTGTATTTCACCTAAAGGGGAATGGATTTACTGTGTTGGTGAAGACAGGTATGAAATT GTCCCTTCATGCAATCTGGTAGATAAAGATGTTGATAGTTGAAACTACCTTATCAGAGACTTTATAAAACAACAATAACC AAGCCTTGGCAAATAGGTGGAGTTTACTCAATCATGCCTATTGACAGGCCATTTAAATCCAAATCCTTGTTAATGGTTAC CTGTAGTTTGCTTTGGTCTGCCTCTATCTCTACTTGTTGGATATGAATTATTCTCCATTTGAGATCTTTTACACATGTTC AAATCCCTTGAGAATGAATCATCTTTATCACAATAGTTGCTACACCACTGCTCTCTTTAATATGTTCATTCCTAATTCTA CGTATTCATCATAAAATCTTCCTTATGAGTTCTATGGCTGGTATCTTCCTTCATTCCCTTGTGAATCTCTATGATGGACC CATAAGACTTGATTTTTCTCCAATTTTCCCTTCTAAAATAAAATTAGTAGGACTCTTACTAAACTTATGTTAAACATACG AGCATAGCCTAATTATGCAGCAATTTCTGAGTTCCATGGGGTTTTCCAGATCAGCATTTTTTTAAAAATGATCGTTCTAA ATCTTCCAGATAATTGTCATATTCTTTGTTCTTAATGGGATCTACAAATTAAATGCAGGAATATGTACTGCTTCAGCTAT CAGTCTGGCAAATTGGAGCATCTGATGAAGGTATGTTTTTTGAGTTGGCCCGAGTCTAAACGTCCCTCAAATTGGTCTTA CTGTCCACAAACATTGTCATACTGTTTTCATATATGTAATTTTATTTGATCCAAATTAGTGTACCTTTCTTTAATGCTTA TATCTGCCGCCTTTATCTTTGAGTTGAATTAAAGGGGGGATTCCATTAACGTTTGTAAATACTGAACTTAAAGTGGAATA ACATGCCTCTCATGGTGTAATTTTATCCATTCAAGCTCATTAACTGCCTTTTCGGTTGATATGTCATGCATTCTGTGTTC ATTAACCTTTGTTTACTATGGTTCAATGGCCATGTATTAACTTGGTGTTCTGGATTTCATTTTCTTGTATGCTATGGTAT CTTCCACCTCTACAAAGGATGTTGTTATCTTCTTGATATATAACTAACTATGGATTTAACAACAATCTCTCTGTTTAATG GCAGGTCCATGAGAAGGAAATTATTGGTGTCACTCATCATCCTCATAGGAATCTTGTTGCAACTTATAGTGAAGACGGCA CAATGAAATTGTGGAAACCTTGA
CDS sequence (LotjaGi6g1v0190000.4) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGATGCATGATGATGCTGTACTTTGTGTGGACTTTAGCAGAGATTCAGAGATGCTGGCATCTGGATCACAAGATGGAAA AATTAAAGTATGGCGTATTAGGACTGGTCAATGCTTGCGGCGTCTTGAACGTGCACATTCCCAAGGTGTTACAAGTCTTT CCTTTTCTCGTGATGGGAGCCAGTTATTAAGTACTTCATTTGACAGCACAGCAAGAATCCATGGCCTTAAGTCCGGAAAG ATGTTGAAAGAGTTTCGCGGCCATACCTCTTACGTGAATGATGCAACTTTCACCAACGATGGGAGCCGTGTTATTACGGC ATCAAGTGATTGTACAGTCAAGGTCTGGGATGTGAAGACTACAGACTGCATACAAACTTTTAAGCCACCTCCTCCTTTAA GGGGAGGTGATGCTTCTGTTAACTCTGTGTACATTTTCCCCAAGAATGCTGATCACATTGTTGTTTGTAACAAAACGTCA TCAATATATATCATGACACTTCAAGGCCAGGTTGTCAAGAGTTTCTCATCTGGTAAAAGAGAGGGTGGAGACTTCGTTGC AGCCTGTATTTCACCTAAAGGGGAATGGATTTACTGTGTTGGTGAAGACAGGAATATGTACTGCTTCAGCTATCAGTCTG GCAAATTGGAGCATCTGATGAAGGTCCATGAGAAGGAAATTATTGGTGTCACTCATCATCCTCATAGGAATCTTGTTGCA ACTTATAGTGAAGACGGCACAATGAAATTGTGGAAACCTTGA
Protein sequence (LotjaGi6g1v0190000.4) extracted from Lotus japonicus Gifu v1.2 Proteins.
MMHDDAVLCVDFSRDSEMLASGSQDGKIKVWRIRTGQCLRRLERAHSQGVTSLSFSRDGSQLLSTSFDSTARIHGLKSGK MLKEFRGHTSYVNDATFTNDGSRVITASSDCTVKVWDVKTTDCIQTFKPPPPLRGGDASVNSVYIFPKNADHIVVCNKTS SIYIMTLQGQVVKSFSSGKREGGDFVAACISPKGEWIYCVGEDRNMYCFSYQSGKLEHLMKVHEKEIIGVTHHPHRNLVA TYSEDGTMKLWKP
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 253 | 253 | 7.1E-125 | – | |
| ProSiteProfiles | 1 | 253 | 253 | 39.074 | ||
| PANTHER | 1 | 253 | 253 | 7.1E-125 | – | |
| Gene3D | 1 | 253 | 253 | 4.5E-65 | ||
| ProSiteProfiles | 1 | 41 | 41 | 16.022 | ||
| SUPERFAMILY | 2 | 252 | 251 | 1.97E-63 | ||
| Pfam | 3 | 31 | 29 | 1.7E-6 | ||
| CDD | 3 | 251 | 249 | 3.57247E-55 | – | |
| SMART | 3 | 32 | 30 | 0.0058 | ||
| PRINTS | 19 | 33 | 15 | 3.4E-7 | ||
| SMART | 35 | 75 | 41 | 1.2E-6 | ||
| Pfam | 36 | 73 | 38 | 1.7E-4 | ||
| ProSiteProfiles | 43 | 84 | 42 | 10.542 | ||
| SMART | 78 | 117 | 40 | 1.7E-10 | ||
| Pfam | 80 | 117 | 38 | 3.8E-7 | ||
| ProSiteProfiles | 85 | 126 | 42 | 16.557 | ||
| ProSitePatterns | 104 | 118 | 15 | - | ||
| PRINTS | 104 | 118 | 15 | 3.4E-7 | ||
| SMART | 120 | 166 | 47 | 18.0 | ||
| SMART | 168 | 210 | 43 | 8.0 | ||
| SMART | 213 | 252 | 40 | 7.6E-4 | ||
| Pfam | 217 | 252 | 36 | 0.07 | ||
| ProSiteProfiles | 220 | 253 | 34 | 11.678 | ||
| PRINTS | 239 | 253 | 15 | 3.4E-7 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of LotjaGi6g1v0190000.4, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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