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Field | Value |
---|---|
Gene ID | LotjaGi6g1v0200500 |
Transcript ID | LotjaGi6g1v0200500.1 |
Related isoforms 1 | |
Lotus japonicus genome version | Gifu v1.2 |
Description | Carboxypeptidase; TAIR: AT4G30810.1 serine carboxypeptidase-like 29; Swiss-Prot: sp|Q949Q7|SCP29_ARATH Serine carboxypeptidase-like 29; TrEMBL-Plants: tr|G7IT50|G7IT50_MEDTR Carboxypeptidase; Found in the gene: LotjaGi6g1v0200500 |
Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr6:49723436..49728859) extracted from Lotus japonicus Gifu genome v1.2.
TAAGAAAAAATGAAGAGTTTACGTAATGAATAATGCTGAAGTAAATAAATGAGTGAAGTTGCATTTATAGACCAGGTGAC TGTTGTATATGCGATTTGAGGTCTTTCTTTTGTGTATATCGGAAAGATAAATTGTATGCGTTAGGAATTGATCCCGGAAT CTTCCCCTACCCAACTCATATGTCTCTTAACTCCTACCAATTAAGCTATTTTACCGGGACTTGAGGTCTCTAAGAAGCGC TTTTAGGATGATGATTATATTTAAATAATATTGTCATATCTCATTACATACGTTGACTTAAAACATTGCTTACATATCTC CAAGCAAGCAGGCAACAACCATTGAAGCAGAAGCTTGTGGTTTTGGCAAATGGCCAAATCTGAGTGGTCTCAAATTTTGG CCATAGCCATAGTTGCCACCCTTTTGCTATGCATCAATTTTGCAACATCATCAGACCCATTTCTTCACCAACACCATGAC AAGGTTGGTAGGCTCCCTGGTCAAAACTTCAACACCAGCTTTGCACACTATTCTGGCTACATCACGGTCAATGACAAAGC TGGGAGAGCACTCTTCTACTGGTTCATGGAGGCAGATCATGATCCTCACTCCAAACCTCTTCTTTTATGGCTCAATGGAG GTTGATTGATTTAACCTTAAACTTTACTACAGTAACAGTAGTAGTCATCACTATTTGTTTTTTAGCTCAATTTTAGTCAT GTTTTCTTGTGATGGTTGTTGTAACTTTGATGATCAATTGATCATGCTCTGTTACTATTGGGATTGGAATGAAACAAAAA TTTCTTGGTGGGCTTTTCAGGACCTGGATGTTCATCCATTGCTTACGGGGAGGCAGAAGAAATTGGCCCGTTTCATATAA AGCCAGATGGCAAGACCCTTTATCTGAATCCTTATTCTTGGAATCAAGGTGAGTGAACCTACAAGCTATTCAAACTTTTT TATTTTAAATTTTTTCCCAATTTCTGAGAATGTTTCTCCCTGTTGGGGCAAGGAGAACATCTTCGAGATTTAGTCTGTTT GGATTTTCGTTGAACTCAAAGTGGATCCACTTTGAACTCATAAGGCAAAAATCCTGCTTCTCCAATCCAGAGTCAACGTG TCAAATTCCAGCTTCTCTGTTGAAACCTTGAGATGTTGAAATCACGTCAAACCAAACATACACTTAGATACAATGAGCTA ACCAAGGAAACCAAGAATTTGAACACCATATTCTGACCCAAATTCTTCAATATTAGGTCTATTGGTGTAACTGTTTGCAC TTGTATGATCCTCACTTTGTTTAATCCTTGTGAATTTGAACTTATTCTCCCTCATCTCCATTCACACTTAAATTTCCTGT CTTATGTCATCCTCTAGAGTTTTCAATGCTTATTTGATAACTACATCTGTGAATCTATGCCTACTGCACATATTGTGCTC CACAGCTTTTAATGCTTATCTGATAATGATAAGGGTCCCTACCTATGCCTACTGTCATATTGTTTTCACTTTCTTTAATG TCTATGTCGTGCTTATTATCTTAAGCTGCTCTGTATAACATGTCCTCCAATAGAAACTGTAAAGAAGTTGTCCTTTCTAT TGAAATAACTGCAAAAGGAATCTTACTTATGCTTATCATGTACTGGTTTTGATGAGCAGAACTGCAGAAATGAAAAATTA ATGAAGAAATAAGCTTCATAAATGCAATTTTGTCTAACCATTTGTGCTTTTTGTAGTTGCCAACATTCTTTTTGTCGACG CTCCTGCTGGAGTTGGATTTTCCTATTCAAATACTTCATCTGACTTGCTAAACCATGGCGATAAGAAGACAGGTAACACT TTTACCAGTTAGCATTCTTCTCTTCTCGTTACACACATATTCACATGCCAGTAGAATTAATAAAATTTTATGTGCAGCTG AGGACTCTCTGATATTTCTATTGAAGTGGTTTGAGCGTTTTCCCCAGTATAAAGGAAGAGACTTCTTTATCAGCGGCGAG AGCTATGCAGGTAAACAAAATTAGTGAGATGAGAACTCTCATTCTGGTAATCTGGTTCATTTACTTTACGTAGGATTTGT AATGTTCTAATTGTATTGGTCAATCTTTAATCCTGGGTTTCAGGGCATTATGTTCCTCAACTTAGCCAAGTTATTGTGAA GCACAACACAGCTGGTAAAGAAAATGCTATAAATCTGAAAGGTTACATGGTACTGAATCTACTGATTGCTTTTTTGGAAA AAAGTAATTCCTTGGTTAATGCTTCTTGTCATCATTATCTTAATCATTATAACTTTGCTGCAGGTGGGAAATGCTCTGTT AGATGATTACCATGATCAACTGGGCATGTACGAGTTCATGTGGTCAAGTGGGATGATTTCAGATGAAACATACAAGCTTT TGAACCTGCTATGTGATTCTCAGTCACTCATACACCCATCACACTCATGTGAAAATATTACTGAAATTGCTCATAGAGAA CTTGGCAATATAGATCCATACAGCATCTTTACTCCTGCTTGCCATGCTAATGTTAGCCAGTCAAGTCAGCCAGTGAAAAG AAAGCATGTGAGTGGACACTTCTTGCCATACAGCATTGAATTTAATTTCTTATGGTCTTAAGGAGCACAGTATTGCTGAC TGTTGATGATTTTCTTATGTCTCATGGTGCAGTATATGTATATATTTTCCAAAACATATGGTACTGTGAGTGAATGCTAT AAATAGCCTATAGTTGTTTCCTGTTGAAGCCAATGTTCTGTATCAAACTTCCTCTATATCCTATTTGTGTCTGACCATGT TTATCATAAGACATTCGTTAGTTTTTGGTTTAAATTCGGACATAAAAATCACGAAGTTAAACCCAAAAATATAGATTGTG ACATATTTCAAATGATAAGAATTTTTCGGCATGCTACAATGTGTCTTAGTTTTGAGATATTTATAGTGCAGATCCTTATT GATTTGTCATGTCATGTAACAGAGATTTGGTAGACTCGGTGCTGGGTATGATCCTTGCACAGCGGAGCACTCCACTATAT ACTTCAATCTACCTGAGGTCCAAAGGATTCTTCATGTTGATCCAAATCATAAGCCTGCTAAATGGGAGGCCTGCAGGTAA TGCTCATTATAGAAACACTTGAACGTATAGCTATTGCGATACATTCTTAATTCATTGCTGGAAAAGGTCAAACAACAAAT GAAATGAGGTTTATCATTCTGGTCTTTTTTATCAGTAAAAATAAAAATCATTTTAACACTCAGTTGCTATTTCTTCTTTA CAATTCTCCTTTCATTTTGAAACTAAAATTTCAAGAATCCTTGCAATTAAATCATTTGATGATTTTGATAATTGGTAGCA TATTTGGAGATTATAGGCCTAGCCTAATGTGCATTATTGTACTTCCTTCTATTTCTCTCCATTTTGCATATGTTTCATTT CTTTCACCAAATTTACAGAGATTAGAATCCATTTATTCATTACAGTGTAGTGATAAATTCCCACTGGAAGGATTCTCCAA GAACAGTGCTCAATGTTTTTCATGAACTTATTCATTCGGGACTGCGGATATGGGTTTTCAGGTTATTCTCATTTTCTAAT ATATACACATCCTTGCATTTGTGTTTACTCATTCATCTGCTGTCATACTTTGCATAAAAGTAATTCCACCCCCTTAAAAT GGCAAAAAGACAGAAATACCCCTTTTAAAAAACTTTCTCTTTGCATCCCCTTCCTCCCACCACCCCTGCTTCCTCATACC TTCTCTCATCTTTCTTCTTCCTTCACCAACACCTTCCCTTTTAATTTCTCTCTCCAAACCATCCTCCATTTCCTCCGCCT CCTTGCCCCAGTCGCCGCCGCCATCCGCCCCTAGGTCCATCGTCGCCATCACCTTTGCCATCGCCGCCATCGCCTCTGGT TAAGGTACTGCTCGCGTTCTTTTCACTTCGTTTCTGTTATCGTTCGCACTTTAAAGTGCATGTACTAGTCTTTGAAGTGC GTTAACAACGCACTTTAAAGTGCGCAAGCTACACTTTAAAGTGCGAAACATATCAGAATGCAGAAAAATTGGAAAAATTG TATGGTTGTTTACCTTTTTCTTTTGCCAATGTAGAAGGTATTACCATGAGTCCAGTTAAGTCCTATGAAGTAGACAAGTC GGAAGAAAAGTCATTATCTCAGAAGTTAGTTAAAACAGAGGATGTGCAAGACGAGCCACTTTCTGTGGATGATACAGACA GGTAACTTACTGTTTATGTCTATGACAATAACAAATTTAATCATATGTGACCTTGTAATGACCAATTGTATTTGCTTGTA GGTGTTTGCTTCTCGGGATGAAATATTGGAATGGGCTCGTAATCTTGGGAAGCAATTGGGCTTTGTTATTGTTATTACGA GGTCTGACGATGGTGGTGTTAACATGAAGACCTTTATGATAACAATTTATGTAATGGTGTTATCGTTAGTTGATCAAACA GTTTATCATAACAAAATACTTACATGACATGTGGTCAGTTGATTACCTTATTGTTATGTAATCATCTCATGCATTTTTAG GTCTATTCTTTCAAGTTTTGCATCAAACAATTTTTGCCTCCTAACATAACTTACATTTTCTGTCCTATATGTTATGTCAG TGGTAATACAGATGGAGTACTCCCTGTAACATCTACTCGCTATAGCATAAATGCTCTCAAGCTTTCAACTGTGAGCCCCT GGCGTCCATGGTATGATGATGAGGAGGTAGGAGGATGGACTCAAGAATATGCTGGACTCACGTTTGTAACTGTAAGGGGT GCAGGCCACGAAGTTCCTCTGCACAGACCAAAACTTGCTCTGACTTTGCTCAAATCCTTCTTAGCAGGAACCTCCATGCC CAAGCTCGAGCAACTCAGCAACTAGTGAAGTTTATGTTCACATTTCCATTTGTTTTTACCATGGAATATTCCTCTAAAAT TCTCCCTTATTCATCGTGAATTATAACACAATAAATAGGGGTTTGAATTGTGTGTGTGTAAAACTTATGTTTTCAAACGA TTATAAGTTTATAAAAGATTTTCGCAAGCATTTGGTGCAGCGGATATAAAAGTAATATTGTAAACGATACAAACACAACA ATATATCCTGGTTCACCCGCAAACGATGGAGTTACGTCCAGATTTTGGCTTAACCAAGATTTTCACTATTAAGTTTTAAG GACTTCTCCTACAACAAGTATTCGGTAGGACTTGTTACAAAGAGAACTGGAAATAAAGACAAGCGAATCCATTTGATTGG TTACCTTTCCTATATAATAGCAACTTATCTTTGTATTTTTTTCAAACATAAAATTAATAGGAAGACAGGGGTTTAGTTAA AATTTTGTTCGTAATGTATATAGAATAGCTCAAGTGGTAGGAGTTGGGGACATATGGATTTGGT
CDS sequence (LotjaGi6g1v0200500.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCCAAATCTGAGTGGTCTCAAATTTTGGCCATAGCCATAGTTGCCACCCTTTTGCTATGCATCAATTTTGCAACATC ATCAGACCCATTTCTTCACCAACACCATGACAAGGTTGGTAGGCTCCCTGGTCAAAACTTCAACACCAGCTTTGCACACT ATTCTGGCTACATCACGGTCAATGACAAAGCTGGGAGAGCACTCTTCTACTGGTTCATGGAGGCAGATCATGATCCTCAC TCCAAACCTCTTCTTTTATGGCTCAATGGAGGACCTGGATGTTCATCCATTGCTTACGGGGAGGCAGAAGAAATTGGCCC GTTTCATATAAAGCCAGATGGCAAGACCCTTTATCTGAATCCTTATTCTTGGAATCAAGTTGCCAACATTCTTTTTGTCG ACGCTCCTGCTGGAGTTGGATTTTCCTATTCAAATACTTCATCTGACTTGCTAAACCATGGCGATAAGAAGACAGCTGAG GACTCTCTGATATTTCTATTGAAGTGGTTTGAGCGTTTTCCCCAGTATAAAGGAAGAGACTTCTTTATCAGCGGCGAGAG CTATGCAGGGCATTATGTTCCTCAACTTAGCCAAGTTATTGTGAAGCACAACACAGCTGGTAAAGAAAATGCTATAAATC TGAAAGGTTACATGGTGGGAAATGCTCTGTTAGATGATTACCATGATCAACTGGGCATGTACGAGTTCATGTGGTCAAGT GGGATGATTTCAGATGAAACATACAAGCTTTTGAACCTGCTATGTGATTCTCAGTCACTCATACACCCATCACACTCATG TGAAAATATTACTGAAATTGCTCATAGAGAACTTGGCAATATAGATCCATACAGCATCTTTACTCCTGCTTGCCATGCTA ATGTTAGCCAGTCAAGTCAGCCAGTGAAAAGAAAGCATAGATTTGGTAGACTCGGTGCTGGGTATGATCCTTGCACAGCG GAGCACTCCACTATATACTTCAATCTACCTGAGGTCCAAAGGATTCTTCATGTTGATCCAAATCATAAGCCTGCTAAATG GGAGGCCTGCAGTGTAGTGATAAATTCCCACTGGAAGGATTCTCCAAGAACAGTGCTCAATGTTTTTCATGAACTTATTC ATTCGGGACTGCGGATATGGGTTTTCAGTGGTAATACAGATGGAGTACTCCCTGTAACATCTACTCGCTATAGCATAAAT GCTCTCAAGCTTTCAACTGTGAGCCCCTGGCGTCCATGGTATGATGATGAGGAGGTAGGAGGATGGACTCAAGAATATGC TGGACTCACGTTTGTAACTGTAAGGGGTGCAGGCCACGAAGTTCCTCTGCACAGACCAAAACTTGCTCTGACTTTGCTCA AATCCTTCTTAGCAGGAACCTCCATGCCCAAGCTCGAGCAACTCAGCAACTAG
Protein sequence (LotjaGi6g1v0200500.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MAKSEWSQILAIAIVATLLLCINFATSSDPFLHQHHDKVGRLPGQNFNTSFAHYSGYITVNDKAGRALFYWFMEADHDPH SKPLLLWLNGGPGCSSIAYGEAEEIGPFHIKPDGKTLYLNPYSWNQVANILFVDAPAGVGFSYSNTSSDLLNHGDKKTAE DSLIFLLKWFERFPQYKGRDFFISGESYAGHYVPQLSQVIVKHNTAGKENAINLKGYMVGNALLDDYHDQLGMYEFMWSS GMISDETYKLLNLLCDSQSLIHPSHSCENITEIAHRELGNIDPYSIFTPACHANVSQSSQPVKRKHRFGRLGAGYDPCTA EHSTIYFNLPEVQRILHVDPNHKPAKWEACSVVINSHWKDSPRTVLNVFHELIHSGLRIWVFSGNTDGVLPVTSTRYSIN ALKLSTVSPWRPWYDDEEVGGWTQEYAGLTFVTVRGAGHEVPLHRPKLALTLLKSFLAGTSMPKLEQLSN
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
---|---|---|---|---|---|---|
SignalP_EUK | 1 | 27 | 27 | - | – | |
Phobius | 1 | 27 | 27 | - | – | |
Phobius | 1 | 9 | 9 | - | – | |
TMHMM | 7 | 26 | 20 | - | – | |
Phobius | 10 | 22 | 13 | - | – | |
PANTHER | 14 | 464 | 451 | 2.9E-228 | ||
PANTHER | 14 | 464 | 451 | 2.9E-228 | – | |
Phobius | 23 | 27 | 5 | - | – | |
Phobius | 28 | 470 | 443 | - | – | |
Gene3D | 32 | 303 | 272 | 4.2E-106 | ||
SUPERFAMILY | 40 | 462 | 423 | 8.83E-129 | ||
Pfam | 43 | 458 | 416 | 4.6E-139 | ||
PRINTS | 120 | 132 | 13 | 6.5E-30 | ||
PRINTS | 133 | 143 | 11 | 6.5E-30 | ||
PRINTS | 169 | 194 | 26 | 6.5E-30 | ||
ProSitePatterns | 183 | 190 | 8 | - | ||
Gene3D | 316 | 462 | 147 | 5.4E-36 | – | |
PRINTS | 429 | 442 | 14 | 6.5E-30 | ||
ProSitePatterns | 429 | 446 | 18 | - |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
GO term | Namespace | Name | Definition | Relationships |
---|---|---|---|---|
Molecular function | Serine-type carboxypeptidase activity | Catalysis of the hydrolysis of a peptide bond not more than three residues from the C-terminus of a polypeptide chain by a catalytic mechanism that involves a catalytic triad consisting of a serine nucleophile that is activated by a proton relay involving an acidic residue (e.g. aspartate or glutamate) and a basic residue (usually histidine). | ||
Biological process | Proteolysis | The hydrolysis of proteins into smaller polypeptides and/or amino acids by cleavage of their peptide bonds. |
Expression pattern of LotjaGi6g1v0200500.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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