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Field | Value |
---|---|
Gene ID | LotjaGi6g1v0217700 |
Transcript ID | LotjaGi6g1v0217700.2 |
Related isoforms 1 | |
Lotus japonicus genome version | Gifu v1.2 |
Description | F-box protein family; TAIR: AT3G06240.1 F-box family protein; Swiss-Prot: sp|Q8GXC7|FBK50_ARATH F-box/kelch-repeat protein At3g06240; TrEMBL-Plants: tr|I3SJH1|I3SJH1_LOTJA Uncharacterized protein; Found in the gene: LotjaGi6g1v0217700 |
Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr6:51976229..51977954) extracted from Lotus japonicus Gifu genome v1.2.
CCCATATATACTTTCAGAAATAAAATACCAATACCAATGTATGTATATATATAAACCCTGGGTTTCTTTTAGTTGCTTCC CCCGTTTGCCTTTGTCCGCCGCCCTCCGTCGTCCAGTCCGCGCCACTCAGGTAAAAACCGATTCAATTTCACTCCCTCCG ACCACTATTTATAGTAGAAAGCTTAATTGCTGTTGGTTTTGAATTGTTATGATTCTCAAATGTAATGATTTGCTTCCCAC TATGTTTACCCAAATATGAATCATGAATGACTAGTGGTTTTGAATTGTGATAATATATATGACTATTGATTTTCACTTGA ATTTTATCATTCAAATTGGGTTTGAATCTGTATATGATTATATTATATATCTCACTTCACAATTCTATGTGTCTATTTCT AGATTCTCCTGTTTTGTCTATATTCTCAAGCAAGCACGCATGAAGATTGAAACCCAAGTTCTGCCTCAAGATTTGATAAC TGAAATTCTTTTGAGGTCGCCGGTGAAGTCTCTTGTACGCTTCAAGGCCGTGTGCAAGTTTTGGCGCTTTCTCATATCGG ATCCCCACTTTGCAATATTACATTTTGAGCTTGCTACTCCTAAACCCATGTTCACAAATTTCCATGAGTCCATTTTCACC ATGGACTTAGATGCACCCCTTGACTCTGATCCTTTATCAGAAAAAATTAAAATTGACTTTTTGCCGCCCATCTACTACTG TACTGAATTTTTGGGTTCATGTAGAGGCTTTATACTATTTGAATGTTATCATCGTTGTGATAATCCTGATAGACCCCTCT ACCTGTGGAATCCAGCTACACGTGTTCACAAAACAATACCTCCATCTCCTTTATATGGTCCCCCTAGTCCTATATATTAT GACTTTTATCCTCGTCGATATTCCGAGTACTCAAGGTTTTATCATGTATTTGGTTTTGGGTATGATTCATCAAAAGATGA CTACTTGGTGGTTAAACTCTCCATTCGACCACTTTTTCCCAATAGAGATTTTGCACTTGTGCAGTTTTTCTCATTAAGAG CTAATATGTGGGAAAATATTGAGTTTACTGATTCGCCTTGTTTGGACCTCTCTAAAGAACGAAGACCCGGGTTGCTCTTC AATGGGATCCTTCACTGGTTGGTTTATGACAAAGATAAATCAATGAATGTTATTATTGCTTTTGATTTAATGGAAAAGAC ACTTTTTGAGATACCTCCACCAGATAATATTGCCCTTGATCATTCATCTTGTAATTTGTGGGGGCATTCAAGTTTTTTGA GTCTATCGCTTGTGGGGAGTGATACAATTGATATATTTGTTATGAAAGAATACAAACTACAATCATCTTGGACCAAGACT CATGTTCTATCTTTCAGTGGTATTCCCTGTCCAGACCAATTAGGCCCAGACCAATTAGGCCCACTGTGTTCTACAAAAAG TGGTGATATTGTTGTGGATTATGATTCAGGAGTACTGGTGAAGTATAATGCTAAAGGAGAACAACTAAGGGTTTGGGAGG ACCGTTTTCTTCGTGTATCTCGAGTGCCCATGTATACAGAGTCTATCCTTTCACTCCCTGGGGTGAGTGAGCAAAGCTGA AAATGAAATTGATACTTATTTTTATTGTGAAATTTTAGCTTGAAGCTTACCTAGTTGTTATGTGGGTAATTATTTTTATT TAAAATAAGATTTTTGTTATGTTCTTGAGTAAACTTGATACTACAA
CDS sequence (LotjaGi6g1v0217700.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGACTATTGATTTTCACTTGAATTTTATCATTCAAATTGGGTTTGAATCTGTATATGATTATATTATATATCTCACTTC ACAATTCTATGTGTCTATTTCTAGATTCTCCTGTTTTGTCTATATTCTCAAGCAAGCACGCATGAAGATTGAAACCCAAG TTCTGCCTCAAGATTTGATAACTGAAATTCTTTTGAGGTCGCCGGTGAAGTCTCTTGTACGCTTCAAGGCCGTGTGCAAG TTTTGGCGCTTTCTCATATCGGATCCCCACTTTGCAATATTACATTTTGAGCTTGCTACTCCTAAACCCATGTTCACAAA TTTCCATGAGTCCATTTTCACCATGGACTTAGATGCACCCCTTGACTCTGATCCTTTATCAGAAAAAATTAAAATTGACT TTTTGCCGCCCATCTACTACTGTACTGAATTTTTGGGTTCATGTAGAGGCTTTATACTATTTGAATGTTATCATCGTTGT GATAATCCTGATAGACCCCTCTACCTGTGGAATCCAGCTACACGTGTTCACAAAACAATACCTCCATCTCCTTTATATGG TCCCCCTAGTCCTATATATTATGACTTTTATCCTCGTCGATATTCCGAGTACTCAAGGTTTTATCATGTATTTGGTTTTG GGTATGATTCATCAAAAGATGACTACTTGGTGGTTAAACTCTCCATTCGACCACTTTTTCCCAATAGAGATTTTGCACTT GTGCAGTTTTTCTCATTAAGAGCTAATATGTGGGAAAATATTGAGTTTACTGATTCGCCTTGTTTGGACCTCTCTAAAGA ACGAAGACCCGGGTTGCTCTTCAATGGGATCCTTCACTGGTTGGTTTATGACAAAGATAAATCAATGAATGTTATTATTG CTTTTGATTTAATGGAAAAGACACTTTTTGAGATACCTCCACCAGATAATATTGCCCTTGATCATTCATCTTGTAATTTG TGGGGGCATTCAAGTTTTTTGAGTCTATCGCTTGTGGGGAGTGATACAATTGATATATTTGTTATGAAAGAATACAAACT ACAATCATCTTGGACCAAGACTCATGTTCTATCTTTCAGTGGTATTCCCTGTCCAGACCAATTAGGCCCAGACCAATTAG GCCCACTGTGTTCTACAAAAAGTGGTGATATTGTTGTGGATTATGATTCAGGAGTACTGGTGAAGTATAATGCTAAAGGA GAACAACTAAGGGTTTGGGAGGACCGTTTTCTTCGTGTATCTCGAGTGCCCATGTATACAGAGTCTATCCTTTCACTCCC TGGGGTGAGTGAGCAAAGCTGA
Protein sequence (LotjaGi6g1v0217700.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MTIDFHLNFIIQIGFESVYDYIIYLTSQFYVSISRFSCFVYILKQARMKIETQVLPQDLITEILLRSPVKSLVRFKAVCK FWRFLISDPHFAILHFELATPKPMFTNFHESIFTMDLDAPLDSDPLSEKIKIDFLPPIYYCTEFLGSCRGFILFECYHRC DNPDRPLYLWNPATRVHKTIPPSPLYGPPSPIYYDFYPRRYSEYSRFYHVFGFGYDSSKDDYLVVKLSIRPLFPNRDFAL VQFFSLRANMWENIEFTDSPCLDLSKERRPGLLFNGILHWLVYDKDKSMNVIIAFDLMEKTLFEIPPPDNIALDHSSCNL WGHSSFLSLSLVGSDTIDIFVMKEYKLQSSWTKTHVLSFSGIPCPDQLGPDQLGPLCSTKSGDIVVDYDSGVLVKYNAKG EQLRVWEDRFLRVSRVPMYTESILSLPGVSEQS
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
---|---|---|---|---|---|---|
Phobius | 1 | 20 | 20 | - | – | |
Phobius | 21 | 43 | 23 | - | – | |
Phobius | 44 | 433 | 390 | - | – | |
PANTHER | 51 | 424 | 374 | 1.4E-84 | – | |
PANTHER | 51 | 424 | 374 | 1.4E-84 | – | |
Gene3D | 53 | 91 | 39 | 8.1E-8 | – | |
SUPERFAMILY | 54 | 180 | 127 | 4.97E-14 | ||
Pfam | 55 | 91 | 37 | 1.4E-5 | ||
SMART | 55 | 95 | 41 | 2.7E-6 | ||
TIGRFAM | 147 | 362 | 216 | 1.1E-14 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
GO term | Namespace | Name | Definition | Relationships |
---|---|---|---|---|
Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of LotjaGi6g1v0217700.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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