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LotjaGi6g1v0219900.1

Overview

Field Value
Gene ID LotjaGi6g1v0219900
Transcript ID LotjaGi6g1v0219900.1
Related isoforms 2
Lotus japonicus genome version Gifu v1.2
Description Transmembrane protein; TAIR: AT1G34630.1 transmembrane protein; Swiss-Prot: sp|Q6GQ39|TM135_XENLA Transmembrane protein 135; TrEMBL-Plants: tr|G7IIR8|G7IIR8_MEDTR Uncharacterized protein; Found in the gene: LotjaGi6g1v0219900
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr6:52318781..52323914) extracted from Lotus japonicus Gifu genome v1.2.

CACGTGCACTCTATTATGCGACTCTTAACTTAAAAACAACTTCATAATCTCATCATCTTTTCTTCGATTCATTAACTCCC CCGAAACCACCACTCCGCCGCCACCATGTCGCCGTCCGCCGAAGATCCCGGCGGAGCCTGCCTATCCGACCCGCCGGAGA CCAACGGCTTCCACAATGACACCAATACGCCGGACGAACCGACCTCTCCTACCGCGCCGCCGCCGCGTCTCCGTTCCCTC CGCCGCGCAGCCGCGCCGGAGAAGCTTCGGAAAGTCGCCGTCGCATCGGCGAAGGGCTTCTCGATCGGAGCTGGTCTCAA GGGCGGTCTCGCTCTCTTCGCGATCCTGGCGCGACTCACGCGGAAAAAGCCGCCAAGGTGAGAGATGAATAACCATTAAC CAGAGAATGGCTCTAACTCGATGAACTCCATGTTCGCGTTTTGCAATGGTTGATTGGAATGGTTTATCTTTGTTCAGGAA GGAGATTGTGGTGTCAAATAGTGAAGCCATTGTTACTGCTTTGAAGGAGACACTGAGATACGGTCTCTTCCTTGGAACCT TCGCCGGAACGTTTGTGTCAATGGATGAGCTTATAGCTGCTGTTGGAGGCCATCGCAGGCATGTTTTACTTTCATATTTT CTTTTTCTGAAATGCATATAGTGTAACAGTAACTATAGGTCAGTTGTAGAAGTGATTCTGGATCTAAATTGTAGTAAGTG ATTCAAAATACTGTGGTTTGAGCTACATGATTTTCAGTAATTGAATGAGTTTGTATTGTAGCACTTGAAGTTCTATCAGT TTTTGTTATGGTAGTGGCTTTTGTTTTGTTGGGGTTATGGAGTGAGAGTGATTGTGATTGGTTAAGTGTTGTGGTTTCAG GACAGGGAAGTGGAGGGCTATGTTGGCTGGGGCGGTTGCTGGGCATTCGATGCTTTTGACGGGGTTAGAGGCGCAGCACA CGAGCTTGGCTATTTATATTCTCATGCGGGCTGCTGTCTTGGCATCTCGTTGTGGGATTAAGAGTGAGCGGTTTGGGAGA ATTTGTAAGCCTCTCACGTGGAAGCATGGTGACATTTTCCTCATGTGTCTCTCCTCTTCGCAAATATTGTATGTAATCAT CTTTTATGTGCTCTTTCTCTTTCTTGTTATTCATTCATTAGTTTTAGTTTTTACTGGGGAAAATATGTATTACTACTTTA TTAACATAGTTGCCCTTGTTCATGCTTGCTTCTTTATAGTTTTTTAGCTCAGCTCTCCTTTGAATTGGATATCTTCTTTT CTTTTGAATCATGTATTGGTACGTTGCGGTTTCCATATTATCACTGTCTCTGTTTTACTTGATGGCTTCACAGTTTAAGG TTGTTGAGTGATGTGGATTCCAGTTGTTCTGCTCTGTTTGCGGATAAAGCATGACTGTATTAATATAGATTGATTCCAAG TGTGATGCTTTGTTGATATAGGAATGCTAATATATGTGCTCCAGTAAAACTCGATGCTGTTGGATTAAATAGTTTCGCAT AATGAGTGGCTGGTCTAGTTCAACCAGTGAGCCTTTAACTACCGACTTTGATTTGATCGCTCATCAATTTGTAGCTAGTT ATTTACCCTTTACTCATATTGTCCATGCTATGATTGCCTGAAGCTGCAGGACTTTGCCTTTCCTAGTTTTTACAATTCAA TATACATTATTTGCTCATGATGTCCTCCTATAGCAGTATGTCAAGTTAATAGCTACTAGATAAATAGGAAGGTAGCATAG AGCAGAAAAGAACTAACACTGAAAAACATGTTGCTCATCTCTAAATTCTTCTTGTAATCCTTTCTTATATTTATGATATA TTAAGAAAGCTTGACATAGCCATGAATTTGTTTATGCAGATATAGCCCTGGCATTTTCTTTCTGGGGCTATTTTTTTGAG ACTGGAACTCACTTGATGCTACCTCCTTCTCTTTTTCTCTTAATAATATGATTAAAAGAAGTTTTTTTAAGAAACTTCAA TGATAATAGAGAATATTTTGGTTTCAGGTCTGCTTATATATTAAAGCAAGAGAGTTTGCCTGCATCATATAAATCCTTTC TCAATAAACATGGTGGAAAGGATCCAGTTATCTTACAAGGTGTAAAAGATATAGCCAGTGGCAAGCCATTTACTAATTTG GATGCAATAGAGAAATACTACAAGACCGTGGGTGTCGATGTGAAATTAGATCCAAATATGAAAGTCCCATGCTCGGTATG AATTTAAGCATTTGGTGATTCTTGTCATTCTCTTTCAATCTCAATAAGTGTAAATAACACATGGAAAATAAATAAAGTAA AAGAAAACATAGGTATTAAACAGTGTTCAATATAGAAGTCCGAAGCTGAATTTGATTGCACTGTAACAGTAACAGTAGCA TCAATTTCTTCATTATGACCAAATCATGTAAAGTTTGAGTGTGTGACTCTTATGATGGATTATGATTCATATTTAATCTG GGATTACATGTAACTTGTAAGCTTCATTTTACAAATGTCTGGAACTCGGTGGAACATATAGGTTTTGATCTTTCTTTTCT GTTCTGTGCCCTGAGAAAATTATCCATTCAATTTTAATCATATTTGTATTGAATTTCTCATTATTTTTGTTACGCATATA AATAGGGATTGGCCTTGTAATTGAGATATGTTGAATATTGTTGAGATAATGAAACCCCTTCTATCCCTTTGTTCTCTCTT CTCTGTCCCTATTCCCTCTCTTCTCCCTCTCTGAGATTCTGGTTGTATCAATTTTATTCTATTTACATTTTTGGGTGTTC AACTTTGTCATTCTTGCATGATGCTTCTTATTGAACTATGTACACCAAGTCCTGTTAGAAACATTTCACCTAGGTCTGGA AAATTAGTTGGTTCTCTGTTTAAAATCACTGATATTTCTGTTGCTTCTCTCGGTTTAAAATCGCTGATATTTTGCAGATT GTACATGGGAATCAATCATGTGGGGGGCACGTCCTTTCTTTTCTTCTTCAAGCCTACAAAAGAGCATTACCTGTTTATCT TCCGGTTTATTTGATACCTGCTCTAATAGTTCATAGAAAAGGACTTCTACAAAGGTGATACAAATGGAGTACATAGTAAC CAATCTCTTCACTGATTTTTCTGTGAGAATTTTATGAAATATGTGTTTTATCAGGACTTTATTGGTGTCATCTGTCATGT ATGGTTGATTTTGTCATGGGAAGGGCTTTGCGGGACGATAAATTATTCCTTTAACATTCTCTACACACTGTCAAAGTCTA GCACAAAATTAAGATCATGTTTTTTGTTATGGCATTCAAATAGATTATATCGTTTTTCACTTTTGCTCATACTGTCTGTT TTCATAACTGCAGGCCTAACACAATATTGGCCAAGGGTCTTGTTGGCACTGCGAGATCAAGCTTGTTTCTGTCTGTGTAT TGCACATCTGCTTGGTTAGCATCTATAAACTTGTTCCGTGCACCGTTATTCCGTTATGGTTGTTTTGCTGCTAAATTTGT TAGTTTATGAGAATTGAGATGTTCAAGATTTCCAATTATGTTGAAAGTTGAAGTGAGATGCTGCCAATACGGCATGTGAG GGTCAATATGTTCCAACAGTTCAGTTGGGAAAATTGTCATTTATTAGAATAAATAAAAGATTTTTTGTTTATGCACTTGC TAGCCTTCTCATTATCTTATTCATCTTTGCTTCACCTTGACAATCAATTTTGTTGAAACTTGAAAGTGAGATGTATAATA TGGATATCTCTATTCTTCATCAGGATGTGGACATGCTTTCTATTCAGGATCTTCAGAAGATGTAACGTTCCAATGGTGGC CATGGGAACAGTATGTTGTTTACTGTAGTCACATATTCTTATCTGTTTGCATTATCTGACATTTAGAGTTCTCCTCGAAT TCAATTCACGAGAAAAATATATTATTTCAATTGCCTGAGCAGTTTTGTTTATACTAGTTGAATTTCGCATTTTCCTGCAG TTCCCTACTGGCCTTGCTCTGGCCATTGAGAAGAAAAGCAGACGAATAGAGATATCATTATACTGCCTTGCTCGGGCTAT TGAGAGCTTCTTCACATGCATAGCTGATGCAGGATATCTGCCACAATCAAGAAGGATTAAGAGAGCTGATGTGATGGTTT TTAGCTTGTCAACAGCCATCATAATGCACTGCTATGCACAGGAGAGGGAAGTTTTCAAATCCAAATATTTGAATGTTCTT GATTGGGTGTTTGGTGTCCCTCCTCCTCCATGTGAAACCCCGCGATACAAAGATGCATAGATGGAATTGAACTGAATAGT CACTTTGCTCCTTGAAAAATATAGGGTCGATCACCTTAGTCACTGAAAGATGAAAATATCCCTGAAAAATGATAAGCGAT CAATTTAGCCCTTGAAAGATGAAAGTTTTGTTAAATTTAGTACTTGAAAGATAAAACATGTAATAAATTTTAGGAACTAT ATTATACTTATTTTTTTTAGTTCGGGGACTAAACTTACTGATCTTGAATCTTTCGGGGACTAAAGTGACTATTCAGTTCA GTTGATGGAATTGCTTGCCCAGCAGAGTTTTTTATCTGAAAATTTGCCCCCGGCTTGGTGGTATGTAAATGATATTTCCC TCTCAAAGAGATTGGTGGCTGGGAACCTGAATATTGTATTAAGAAGGGAAGTACAACGATGGCAGGATGAAAATTGTTTC CTGGAAGCACTCTGATGAGATTGAAGGAGGTTTCGGCTGGTTATTGCGACATGAGATTTTTTCAAGCGAAGAGCAGACCA ACTAATCTATTCATTGGAGCTCTGATCTTATTCACCAAAGTTGCTAAAACCACAAAGGATCAACTCCTCAGCTGTCTGTG TTTCCTGCTATACCTTCACATATACCATTTGTCTCCTGAGCACTAGATTATAAAAGAAAAAGGGTGTTTTTTACCCTTCA CTTTGATTTTTTAATACTATTTAATTGAATTAAGTATTATTACATTTTTTTTCAAAATGAATTGTTTGTCATTGTCATGA CAAACTTCAGATGAGATTTTCAGCAACATATAAGATGTAAATACATCGTTCCCGTCACTTTTTTTCTCTTTAGGAAAATT AACTTATTAACATA
Download Genomic Sequence

CDS sequence (LotjaGi6g1v0219900.1) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGTTGGCTGGGGCGGTTGCTGGGCATTCGATGCTTTTGACGGGGTTAGAGGCGCAGCACACGAGCTTGGCTATTTATAT TCTCATGCGGGCTGCTGTCTTGGCATCTCGTTGTGGGATTAAGAGTGAGCGGTTTGGGAGAATTTGTAAGCCTCTCACGT GGAAGCATGGTGACATTTTCCTCATGTGTCTCTCCTCTTCGCAAATATTGTCTGCTTATATATTAAAGCAAGAGAGTTTG CCTGCATCATATAAATCCTTTCTCAATAAACATGGTGGAAAGGATCCAGTTATCTTACAAGGTGTAAAAGATATAGCCAG TGGCAAGCCATTTACTAATTTGGATGCAATAGAGAAATACTACAAGACCGTGGGTGTCGATGTGAAATTAGATCCAAATA TGAAAGTCCCATGCTCGATTGTACATGGGAATCAATCATGTGGGGGGCACGTCCTTTCTTTTCTTCTTCAAGCCTACAAA AGAGCATTACCTGTTTATCTTCCGGTTTATTTGATACCTGCTCTAATAGTTCATAGAAAAGGACTTCTACAAAGGCCTAA CACAATATTGGCCAAGGGTCTTGTTGGCACTGCGAGATCAAGCTTGTTTCTGTCTGTGTATTGCACATCTGCTTGGATGT GGACATGCTTTCTATTCAGGATCTTCAGAAGATGTAACGTTCCAATGGTGGCCATGGGAACATTCCCTACTGGCCTTGCT CTGGCCATTGAGAAGAAAAGCAGACGAATAGAGATATCATTATACTGCCTTGCTCGGGCTATTGAGAGCTTCTTCACATG CATAGCTGATGCAGGATATCTGCCACAATCAAGAAGGATTAAGAGAGCTGATGTGATGGTTTTTAGCTTGTCAACAGCCA TCATAATGCACTGCTATGCACAGGAGAGGGAAGTTTTCAAATCCAAATATTTGAATGTTCTTGATTGGGTGTTTGGTGTC CCTCCTCCTCCATGTGAAACCCCGCGATACAAAGATGCATAG
Download CDS Sequence

Protein sequence (LotjaGi6g1v0219900.1) extracted from Lotus japonicus Gifu v1.2 Proteins.

MLAGAVAGHSMLLTGLEAQHTSLAIYILMRAAVLASRCGIKSERFGRICKPLTWKHGDIFLMCLSSSQILSAYILKQESL PASYKSFLNKHGGKDPVILQGVKDIASGKPFTNLDAIEKYYKTVGVDVKLDPNMKVPCSIVHGNQSCGGHVLSFLLQAYK RALPVYLPVYLIPALIVHRKGLLQRPNTILAKGLVGTARSSLFLSVYCTSAWMWTCFLFRIFRRCNVPMVAMGTFPTGLA LAIEKKSRRIEISLYCLARAIESFFTCIADAGYLPQSRRIKRADVMVFSLSTAIIMHCYAQEREVFKSKYLNVLDWVFGV PPPPCETPRYKDA
Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

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Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
Phobius
SIGNAL_PEPTIDE
1 18 18 - –
Phobius
SIGNAL_PEPTIDE_N_REGION
1 1 1 - –
PANTHER
PTHR12459
2 321 320 6.8E-157
IPR026749
PANTHER
PTHR12459:SF15
2 321 320 6.8E-157 –
Phobius
SIGNAL_PEPTIDE_H_REGION
2 13 12 - –
Phobius
SIGNAL_PEPTIDE_C_REGION
14 18 5 - –
Phobius
NON_CYTOPLASMIC_DOMAIN
19 201 183 - –
Pfam
PF15982
146 266 121 2.7E-7
IPR031926
TMHMM
TMhelix
200 222 23 - –
Phobius
TRANSMEMBRANE
202 222 21 - –
Phobius
CYTOPLASMIC_DOMAIN
223 333 111 - –

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

Unable to find any GO terms for the transcript with the identifier.

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Expression data

Expression pattern

Expression pattern of LotjaGi6g1v0219900.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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