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LotjaGi6g1v0242500.4

Overview

Field Value
Gene ID LotjaGi6g1v0242500
Transcript ID LotjaGi6g1v0242500.4
Related isoforms 6
Lotus japonicus genome version Gifu v1.2
Description ATP-dependent RNA helicase; TAIR: AT3G19760.1 eukaryotic initiation factor 4A-III; Swiss-Prot: sp|Q5VNM3|RH2_ORYSJ DEAD-box ATP-dependent RNA helicase 2; TrEMBL-Plants: tr|V7B1T6|V7B1T6_PHAVU Uncharacterized protein; Found in the gene: LotjaGi6g1v0242500
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr6:55470375..55473833) extracted from Lotus japonicus Gifu genome v1.2.

GTCGGCGTTTCGGCTACGATGGCGACGGCGTCTGTGGTACCGGCGAACCGGCGACGAGGTCCCACCGTCACGGATGACAT GGACTTCGAGACCACGGAGGGTGTTAAGGCGATTGGAAGCTTCGAAGAGATGGGGATTAAGGACGACCTGCTCCGCGGAA TCTACCAGTACGGTTTCGAGAAACCCTCGGCGATTCAACAGCGTGCCGTCACGCCCATCATCCAGGGTCGCGATGTCATC GCTCAGGCTCAATCTGGCACCGGGAAAACCTCCATGATCGCTCTCACCGTGTGTCAAGTTGTTGATACCTCCGTCAGAGA GTGAGTATACCCGTTCTGCTTTCTCAAATTTCTCTGTATCTGTGTTTTTACTTCGTTTGCCTAAGCATTCCCTGAGAAAA CAAAGTAATTTGCGGTTGAATTTCTCAATTAGGGTTTTTGGGTAAGACTCAATTTTAGGGGTTTTGATTGGTGTTTGTGT TTGGATGGATAATGTTGATTTCAGAAATTTATGACTAGCAAGAAATTTTCACATGGGGTAGCTGATTTTCAGATGGAGGG TTTTTGGAGGGTGATTTTTTGTTTTCAATTTGTATAAATTATAGGAAATTTTTAAAGAATGATAGACACTTAGTCACCTA AATGGCTCTGTTGAGCATAATATTGGAGATGTGTGATTTGCTTTGAACTGAGGATATTGTTTTCTTTTCGGTATGTGTTA TTGTCAAGATATATGGTATAATGATTTTCTGAACAGGGTGCAGGTGTTAATCTTGTCGCCTACGAGGGAACTGGCGTCAC AGACTGAGAAGGTTATATTGGCTGTTGGGGATTTTATTAACATACAAGCGCATGCTTGCGTTGGAGGTAAAAGTGTTGGG GAAGATATAAGGAAACTTGAGCATGGAGTTCACGTGGTGTCTGGAACTCCTGGCAGAGTTTGTGACATGATCAAGAGGAG AACCTTGCGCACAAGGACTATCAAGATGCTAGTTCTTGTGAGTTCATGGCTACTATAATTGTCAATTCTTCATTGCATTT ATTATTTGTTTTGTTGTCACCATATGTCAATGAGTATCTTATATGTATTTTTTCTTTCTATTAACAGGATGAATCTGATG AGATGTTGAGCAGAGGGTTTAAAGATCAAATTTATGATGTGTATAGATATCTGCCCCCTGACCTTCAGGTGGGTTCTCTT TCTCTGAATGTCCTTATTGTTGTTATTGTATTCTGAATGAATTTTCTCCTATTTGAAATCTTATTATATTTTAACATAAA CTAAGGTGCATATTGGTAGTATATTTTCTTTTGGCAATACTTAGGTGGGGCAAGGACATGAAATAAAAATGATCTTGAAT TTGAAATATACCGGAACTCCAATTCAGAAGAATTTCACTAATAAATTAGTATTGGGGGGGGAGTCTCTTAGGAGGGTGTT TGAAAATTGGATTTAGTGGCTTGGCATGACTTGAAGGTTTGACAATATGGGGAAAGAAACTGTAGCAATGAATCAAGCCA TATATTGAAGGAAGGATGGGGGAGGATGAGAAGTTTGATTCGTGAACTATTTTCCTGCATATGACTATTTTTAGTAGTTT AATTTTTGAATTCATTGAAAACTAAGCATCTAAAATCAGCGACATTAAGAGCTGCTGATTTTCTCCATAATAAGCAGCTT GCACTATCATTTGACTGTTGTCCTGTTCTCAAATGAAGTGGCTAGGCGAGGATGTTCTTTTACGGATTTTTTGTAGGTCC TGATATCTTTAATTGGATTTGTATTTTGATTTAAACTTATGCTGGTCCAATAACTCACTTTTGCTTTATAACTTAACTGA TTACGACTTCAAGATCCTTAGACCTTATTACTGATGTAGTATCAAGTATGTCGTGTTCTCTGAACTGTTGGGTTTTTACT ATGTAGGTTTGCTTGATTTCTGCTACACTTCCCCATGAAATATTGGAGATAACAAATAAGTTCATGACAGATCCTGTGAG GATCCTTGTAAAACGTGATGAATTGACATTGGAGGTAAGCAGTTGCTTTCATTCTCTTAGTGCCTTTTGATTTTTAACTG GATATTGATGCAATTGCCTCCTCCCCCTCCCAATGACAGGGAATCAAGCAATTTTTCGTTGCAGTTGAGAGGGAAGAGTG GAAATTTGATACTCTATGTGATCTTTATGATACTCTCACTATCACCCAAGCTGTCATATTCTGCAACACTAAGAGAAAGG TAAATGAAAATTATCATCATTTCATTTGATTGGCTGGCTGTTCATTTCATCTCACTTTTAACAGACTAACAGAGTAGATT ATTAGATTTTGCACTATCTTTCTATTCTTGCTCATTGTGATTTGTTTATCATTTCTGTGGTATTAATATATCCACTTTGA ATAGGTGGACTGGTTAACTGAAAAGATGCGTAATAATAATTTCACTGTCTCATCAATGCACGGCGACATGCCTCAGAGAG AAAGAGATGCAATTATGGCAGAATTTCGTGCTGGATCAACCCGTGTACTAATTACAACAGATGTTTGGGCTCGTGGTCTT GATGTGCAGCAGGCAAGATATTACACCATTCTGTGTGTTTTTATTTTTCCTGTGATGAGATATCATGAGTTCACCTTGGA AATATCCTGCTTAATGTGTGATACAGATGCTGCATAATTATGAGAGGCCTCCCTAAGAATTGTTTCTGCTGCTTGTTGGA AACATAGATAATAATTGCTAACTTGAAGAGAACCTAAAGAATATTATTGTTGCAGACTTACAGCAAAAAAAATCATGACT GTTTGGACTAATAACTAATTTAGGTTATCAAGGGGCCTGGTATTCCAAATTTCAGGGATTTAACAAAATTCTCTGGTTCT TCCTTTGCTGGTTGTATTTTTTGTTTTGGGTACAATGAAGGATGGGCTAATATAATAGCAATTTATGTTTCGCTCTGCAT AAATACAAACCGATGGAATTATTTGACTGTCAATTAATTTATTGAGAAATTCTTCCCCTGATTTCTTTTGAATTGTACAT GGAGGAATCAATCTCCTTTTTCACTGATCATGTATTTGCTTCTGTTATCAGGTTTCTTTAGTTATTAATTATGACCTTCC CAATAACCGTGAGCTGTACATTCATCGGATTGGTCGCTCTGGACGTTTTGGACGAAAGGTATTGGAAATGTTAAAATTAG TTGTATTTCTATTATTTACTGTCCTGAGTAGTTACCTAGTCTTATTTTCATATCAGAAATTGTTCTGCACTATAGGAGGA TTTTGAGAGGTTATCCGTTGATTCCTTATCTTCCACTCTTCCCATGTTCTCAAATTGTTTTGCAGGGTGTTGCAATAAAT TTTGTCAAGAGCGATGATATCAAGATCTTGAGAGATATTGAACAATATTACAGTACTCAGATTGATGAAATGCCCATGAA TGTTGCTGATCTTATATAG
Download Genomic Sequence

CDS sequence (LotjaGi6g1v0242500.4) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGGCGACGGCGTCTGTGGTACCGGCGAACCGGCGACGAGGTCCCACCGTCACGGATGACATGGACTTCGAGACCACGGA GGGTGTTAAGGCGATTGGAAGCTTCGAAGAGATGGGGATTAAGGACGACCTGCTCCGCGGAATCTACCAGTACGGTTTCG AGAAACCCTCGGCGATTCAACAGCGTGCCGTCACGCCCATCATCCAGGGTCGCGATGTCATCGCTCAGGCTCAATCTGGC ACCGGGAAAACCTCCATGATCGCTCTCACCGTGTGTCAAGTTGTTGATACCTCCGTCAGAGAGGTGCAGGTGTTAATCTT GTCGCCTACGAGGGAACTGGCGTCACAGACTGAGAAGGTTATATTGGCTGTTGGGGATTTTATTAACATACAAGCGCATG CTTGCGTTGGAGGTAAAAGTGTTGGGGAAGATATAAGGAAACTTGAGCATGGAGTTCACGTGGTGTCTGGAACTCCTGGC AGAGTTTGTGACATGATCAAGAGGAGAACCTTGCGCACAAGGACTATCAAGATGCTAGTTCTTGATGAATCTGATGAGAT GTTGAGCAGAGGGTTTAAAGATCAAATTTATGATGTGTATAGATATCTGCCCCCTGACCTTCAGGTTTGCTTGATTTCTG CTACACTTCCCCATGAAATATTGGAGATAACAAATAAGTTCATGACAGATCCTGTGAGGATCCTTGTAAAACGTGATGAA TTGACATTGGAGGGAATCAAGCAATTTTTCGTTGCAGTTGAGAGGGAAGAGTGGAAATTTGATACTCTATGTGATCTTTA TGATACTCTCACTATCACCCAAGCTGTCATATTCTGCAACACTAAGAGAAAGGTGGACTGGTTAACTGAAAAGATGCGTA ATAATAATTTCACTGTCTCATCAATGCACGGCGACATGCCTCAGAGAGAAAGAGATGCAATTATGGCAGAATTTCGTGCT GGATCAACCCGTGTACTAATTACAACAGATGTTTGGGCTCGTGGTCTTGATGTGCAGCAGGCAAGATATTACACCATTCT ATGCTGCATAATTATGAGAGGTTTCTTTAGTTATTAA
Download CDS Sequence

Protein sequence (LotjaGi6g1v0242500.4) extracted from Lotus japonicus Gifu v1.2 Proteins.

MATASVVPANRRRGPTVTDDMDFETTEGVKAIGSFEEMGIKDDLLRGIYQYGFEKPSAIQQRAVTPIIQGRDVIAQAQSG TGKTSMIALTVCQVVDTSVREVQVLILSPTRELASQTEKVILAVGDFINIQAHACVGGKSVGEDIRKLEHGVHVVSGTPG RVCDMIKRRTLRTRTIKMLVLDESDEMLSRGFKDQIYDVYRYLPPDLQVCLISATLPHEILEITNKFMTDPVRILVKRDE LTLEGIKQFFVAVEREEWKFDTLCDLYDTLTITQAVIFCNTKRKVDWLTEKMRNNNFTVSSMHGDMPQRERDAIMAEFRA GSTRVLITTDVWARGLDVQQARYYTILCCIIMRGFFSY
Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
MobiDBLite
mobidb-lite
1 20 20 - –
PANTHER
PTHR24031
16 340 325 8.5E-152 –
PANTHER
PTHR24031:SF617
16 340 325 8.5E-152 –
Gene3D
G3DSA:3.40.50.300
23 241 219 7.1E-66 –
SUPERFAMILY
SSF52540
27 237 211 7.36E-61
IPR027417
ProSiteProfiles
PS51195
33 61 29 10.889
IPR014014
CDD
cd18045
35 235 201 7.46778E-124 –
SMART
SM00487
52 249 198 4.1E-53
IPR014001
Pfam
PF00270
58 220 163 4.9E-40
IPR011545
ProSiteProfiles
PS51192
64 234 171 24.995
IPR014001
SUPERFAMILY
SSF52540
240 343 104 4.11E-27
IPR027417
Gene3D
G3DSA:3.40.50.300
242 350 109 2.5E-34 –
ProSiteProfiles
PS51194
245 358 114 14.293
IPR001650
CDD
cd18787
246 340 95 9.11386E-36 –
Pfam
PF00271
259 344 86 1.9E-18
IPR001650
SMART
SM00490
286 354 69 6.3E-9
IPR001650

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0003676
Molecular function Nucleic acid binding Interacting selectively and non-covalently with any nucleic acid.
Subterm of
GO:0005524
Molecular function ATP binding Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator.
Subterm of

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Expression data

Expression pattern

Expression pattern of LotjaGi6g1v0242500.4, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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