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Field | Value |
---|---|
Gene ID | LotjaGi6g1v0259600 |
Transcript ID | LotjaGi6g1v0259600.2 |
Related isoforms 2 | |
Lotus japonicus genome version | Gifu v1.2 |
Description | Protein phosphatase 2c, putative; TAIR: AT3G17090.1 Protein phosphatase 2C family protein; Swiss-Prot: sp|Q0V7V2|P2C42_ARATH Probable protein phosphatase 2C 42; TrEMBL-Plants: tr|G7IMT1|G7IMT1_MEDTR Serine/threonine phosphatase family, 2C domain protein; Found in the gene: LotjaGi6g1v0259600 |
Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr6:57239669..57243794) extracted from Lotus japonicus Gifu genome v1.2.
ATGCTTCAGGCGTTGATGAATCTCTTCTCTCCGTGTTGGAAGCCGTTCAAGAACGGTGATGACTCTTCTGCCGGAGCCGG AGGAGGAGGAGGAGGAGGAGGCATTGTCGGAGGAGGAGGAGGAAAAGGTGAAGGCAAGGACGGCTTGCTCTGGTTCCGTG ACATCGGAAAGTACGGCTCCGGTGAATTCTCCATGGCCGTTGTTCAGGCCAACCAGGTTCTTGAAGACCAGAGCCAGATC GAGTCTGGTCCCCTCGGCACCTTCGTCGGGGTTTACGACGGCCACGGCGGCCCCCTCGCCGCCCGATTCGTCTGCGATCA CTTGTTCCGCGATTTCCAAGGTTCGCTCAATTCTCTCCCTCTCTCTCTCTCTTATGTAGGGTTTAGTGTTCATTTCTTGA TCGTGAGTTTATTGGAAGTTTCGAACTGTTAAAGTTAGCAACCCGTGATTTTCATTGATTCGCTTTTTCGTGAACATGTA AAGAGTTGAATAAATGCGCGCCATAAATACTGTTGTTTGATGAGCTTGCTATTTAGGAACTCTGTCTCTTTCGAAATCTT CTTGAGTTTTTCTTGTTAGAAATTGAATGTGTGGTTTGTGTTGTGTGTGATAAAGTGTTGCTTTCTGTGTTTGAAGAGTC AACTATTTGATTGAGATGTCTTGGACTTGGTGTTTGTGCAGCAATATCGGGTGAGTCACAGGGTGTTGTGACGGCTGAGA CCATTCGAGCAGCGTTCCTTCGAACAGAAGAGGGGTTCACGGCACATGTAACGGAATTATGGAATACTCAACCTCAAATT GCGACTAATGGGACGTGTTGTCTGGTTGGAGTGATTTTTCAGCAGACCCTCTTCGTGGCAAATCTTGGAGATTCTCGTTG TGTGCTGGGAAAGAAAGTTGGTAACACTGGTGGGGTTGCTGCAATTCAGCTGTCTACGGAGCACAACGCGAATCTTGAGG ATATTAGACAGGAGCTTAAAGAATTGCACCCTGACGATCCCCAAATTGTCGTCCTCAAACATGGAGTGTGGAGAGTGAAA GGCATTATTCAGGTAATTTTATAGGCTTTTGCCTCTAAAGGACTATCCTAACATGGCAACCTGTGTTTTACTTAAATGGG ATGATCGCTGATCAAATATTCATTAATTGCTTGGATTCTCTGTTATGTTTTCTTATTGAAGTGCTGTGCTGAAGAAACTT GTATATTGAGTTTTGATGATAAGATAGTGTTGGAAGCAACATTGTATTTTGTAAAGTCTGATACATGTGATCAACTTCAC CAACCCCTGTCTTCAAGTGTTTGTGGTTTATATGCTTAGTCTTGATTTGAATGGCAATGCAAAATGCTAAAATAAAGGAA AACTTATTGTGTGCCTAATATGCATGACGAAAAGAACTAAATCTGATAAGAATTGTAGTTTATATGAAGCACTCCATGAA GAAAATTCCCTTTTGTTTCTAGTCCTACTCTGTTGACATTGAGGATGTGTGTTAGCAAATTAATCAGTGCTTAAAATTTA TATGATCACGTTGCTACGCAAAATTTTGATTAGCGCTTGTCAACTATGAGACATTTCAAGCAAGTTGCTTTAACTTGAAA GTGGGGGGCTTAACTTATCTGAATTGTCACCTTGCTTTAAAACAATACATTGCCTAACTCAACCTTTGCTTACATACATT CTAGTGAGACTCTATATGCCACTATGGTTTGTCAAGTTCATATGACTAGGCTTGTTTACAATGATATTTCTGCACACATG CAAGGTATAGCCTTATAGCCATAGGTCTCGTTTATTTTCATAGGATTTCTTAATGGTATTTTTGGATATGTAGAGAAAAT GGATAGATAGAAATGAAGAGTTAATGGGATGATGGATTAAGAGAAAAATAAAAGAAAGAAGGGTCAAAACTCTTCTTTTG TTTGGCTGGATGGAAAATGGAGAAGAAAGAAAATGTAGTTGTGTTAAAATAATTTTTGCAACCTTTTACATAATGATGGG TAGGTAAGATGGGTAAATTTGTCATTTCATGCATAAAATTCTCCCTCCCATTTTCTTCTTATGAGGGAGTAGACAATTTT TTCGTAAGCTCTACCATGGTTTTTTAAGTAATTCTAGGTAAGAGACATAAATTATTGCAAGAGAAGCAGCACGAGAGTAA GAAAAAGTTGTATGAGATTGAGGAATTAGAGTGGGTGCGGTTTAGAGAGATCGAAAGGAAGTTTAGGTAATAGTTCAGTT TGGGCACACATCAAAATTAGCATGGGAAAGAAATTTTTATCATACATCAAAAAATATTATATCATGAGACTGCTTGTAGC AATAGGTGTTTCATAGCAGCACACTACAAGAGAATGTGTTTTTCATTTGTTTGATTGAAACAAATATTACTTTGTGTCCT CAAACTATATGAGGCCGTTAGTTATCAGTAGCAGTCATTTATTTAAAGTTTCAAAAGATTTAAACGATGTAAAAGAAAAA TATTTTTATCAGAACAATTTGAACTTTTTATGGTGGATGTGATCAGGAAAAGAAACATGTGATGGTTGCTGAGATTAGAA ATCAGCATTTTAAGTTAGTTGTCTACTAATGTATAATAGCCGGTTTTTATGTTTTTTAACTTTTTTTATAACTCCTTTTA CTTAGCTGGCTGTTGTTTTGTTTAATTACTACAAAGTTTGTAGGTTAACTTAGTTCAATTAGTGCATCTGTGAAATGACA CCATTTGCATTATAGTCATGGTTATGCATGAAGAAAATTGGATATCAGCTTTTCCAGTTTGATCCTCAGCTGCCTTTTCA ATTTGATTTATGATGTTAAATGTTTCAACTTTTCGATCTCCTGCAACCATTATCTTATTTGTCAGAATTGCTTTTCACAC TGTAATTATAACATCATCTCACCACTTCCATGATATTTGATGCAGGTTTCTAGATCTATAGGTGACTCGTATATGAAACA TGCGCAGTTTAATCGGGAACCTATTAATCCAAAATTCAGACTTCCTGAACCAATGAACATGCCTATCATGTCTGCTAATC CAACTATTCTTTCTCATCCTCTCCAACCAAGTGATTCCTTCCTTATATTTGCATCAGATGGTTTATGGGAGCACCTGAGT AATGAGCAAGCAGTTGATATTGTTCACAGCAATCCACGTGCGGTAAAATTCTTTTCTACTTTGTTTTTTTTTGTTTTCTC ATAAGATTTACTTGTGTATTGGATTGGTTCATGGTTTATTCGTGTTCATTTTATATAACCAGAAAATGTTTTGGTTTATT TGTTTTGCACTGGATTAATTAATCCATTGATTGAATACAGCATAGTACTGTCCTCTTTTTTTGTATCATTTCAGTTAACG GAATAGTGGCCGTAGTTACCAGTGTCTTAGGCTGACAGGTCATCCATGATAGCTCCCCATAGATTTGTGTTGCAAGACTC AAATCACTTGAATCTTATTTGTACTTTCTTGATGAGATTCAGATTTTACTCAGTCACCATTGTGGGACTCAGATCACTTG AATCTTAGTTGTACTTTCTTGATGAGATTCAGATTTTACTCAGTCACCATTGTAGCCTCCTATATAATAATTTATTTGTC TAGGCAATTTCATCTTTGTTTCCACCTATGCATTTCTTTTTGAGACACTTAATGATGAGGGAAACTTGTTATTCCCAATT TATGCATTGCTAGTTCTTGAAGGGTGCAATGCAGAGTAATTGAGCAGCATTTATAGGTTAAAGTTGTAATACAATTTTAT GATATGGCTGTGCATTGTTGGTTTTCCAGAAAAACAGAGAAAATTGAAGCGGTGATATTGATTCAGCTGGTTATTGTTTT TGTCAATGCCTTGCCTTTTGCTTGTTGATTCCAAAATTCCAGTGGTGCTCATGAACTGTGTTGGTTGATGCAGGGTAGTG CAAAGAGACTTGTGAAGGCTGCGCTGCAGGAAGCAGCAAGGAAACGTGAAATGAGATATTCGGACCTTCGAAAGATAGAC AAGAAGGTCCGGCGGCATTTTCATGACGATATAACTGTTATTGTTTTATTCTTAAATCACGACCTTATATCTAGAGGTTC AGTTCTAAACCCGCCACTCTCACTTCGAAGTGCTCTTGATCACTGA
CDS sequence (LotjaGi6g1v0259600.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGCTTCAGGCGTTGATGAATCTCTTCTCTCCGTGTTGGAAGCCGTTCAAGAACGGTGATGACTCTTCTGCCGGAGGTGA AGGCAAGGACGGCTTGCTCTGGTTCCGTGACATCGGAAAGTACGGCTCCGGTGAATTCTCCATGGCCGTTGTTCAGGCCA ACCAGGTTCTTGAAGACCAGAGCCAGATCGAGTCTGGTCCCCTCGGCACCTTCGTCGGGGTTTACGACGGCCACGGCGGC CCCCTCGCCGCCCGATTCGTCTGCGATCACTTGTTCCGCGATTTCCAAGCAATATCGGGTGAGTCACAGGGTGTTGTGAC GGCTGAGACCATTCGAGCAGCGTTCCTTCGAACAGAAGAGGGGTTCACGGCACATGTAACGGAATTATGGAATACTCAAC CTCAAATTGCGACTAATGGGACGTGTTGTCTGGTTGGAGTGATTTTTCAGCAGACCCTCTTCGTGGCAAATCTTGGAGAT TCTCGTTGTGTGCTGGGAAAGAAAGTTGGTAACACTGGTGGGGTTGCTGCAATTCAGCTGTCTACGGAGCACAACGCGAA TCTTGAGGATATTAGACAGGAGCTTAAAGAATTGCACCCTGACGATCCCCAAATTGTCGTCCTCAAACATGGAGTGTGGA GAGTGAAAGGCATTATTCAGGTTTCTAGATCTATAGGTGACTCGTATATGAAACATGCGCAGTTTAATCGGGAACCTATT AATCCAAAATTCAGACTTCCTGAACCAATGAACATGCCTATCATGTCTGCTAATCCAACTATTCTTTCTCATCCTCTCCA ACCAAGTGATTCCTTCCTTATATTTGCATCAGATGGTTTATGGGAGCACCTGAGTAATGAGCAAGCAGTTGATATTGTTC ACAGCAATCCACGTGCGGGTAGTGCAAAGAGACTTGTGAAGGCTGCGCTGCAGGAAGCAGCAAGGAAACGTGAAATGAGA TATTCGGACCTTCGAAAGATAGACAAGAAGGTCCGGCGGCATTTTCATGACGATATAACTGTTATTGTTTTATTCTTAAA TCACGACCTTATATCTAGAGGTTCAGTTCTAAACCCGCCACTCTCACTTCGAAGTGCTCTTGATCACTGA
Protein sequence (LotjaGi6g1v0259600.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MLQALMNLFSPCWKPFKNGDDSSAGGEGKDGLLWFRDIGKYGSGEFSMAVVQANQVLEDQSQIESGPLGTFVGVYDGHGG PLAARFVCDHLFRDFQAISGESQGVVTAETIRAAFLRTEEGFTAHVTELWNTQPQIATNGTCCLVGVIFQQTLFVANLGD SRCVLGKKVGNTGGVAAIQLSTEHNANLEDIRQELKELHPDDPQIVVLKHGVWRVKGIIQVSRSIGDSYMKHAQFNREPI NPKFRLPEPMNMPIMSANPTILSHPLQPSDSFLIFASDGLWEHLSNEQAVDIVHSNPRAGSAKRLVKAALQEAARKREMR YSDLRKIDKKVRRHFHDDITVIVLFLNHDLISRGSVLNPPLSLRSALDH
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
---|---|---|---|---|---|---|
PANTHER | 23 | 364 | 342 | 1.3E-154 | – | |
PANTHER | 23 | 364 | 342 | 1.3E-154 | ||
SMART | 32 | 344 | 313 | 3.7E-69 | ||
Gene3D | 39 | 353 | 315 | 2.3E-80 | ||
ProSiteProfiles | 42 | 346 | 305 | 42.716 | ||
CDD | 46 | 346 | 301 | 3.46458E-61 | ||
SUPERFAMILY | 54 | 347 | 294 | 7.19E-53 | ||
Pfam | 69 | 316 | 248 | 2.0E-37 | ||
ProSitePatterns | 71 | 79 | 9 | - |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
GO term | Namespace | Name | Definition | Relationships |
---|---|---|---|---|
Molecular function | Catalytic activity | Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic. | ||
Molecular function | Protein serine/threonine phosphatase activity | Catalysis of the reaction: protein serine phosphate + H2O = protein serine + phosphate, and protein threonine phosphate + H2O = protein threonine + phosphate. | ||
Biological process | Protein dephosphorylation | The process of removing one or more phosphoric residues from a protein. | ||
Molecular function | Cation binding | Interacting selectively and non-covalently with cations, charged atoms or groups of atoms with a net positive charge. |
Expression pattern of LotjaGi6g1v0259600.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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