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LotjaGi6g1v0259600.3

Overview

Field Value
Gene ID LotjaGi6g1v0259600
Transcript ID LotjaGi6g1v0259600.3
Related isoforms 2
Lotus japonicus genome version Gifu v1.2
Description Protein phosphatase 2c, putative; TAIR: AT3G17090.1 Protein phosphatase 2C family protein; Swiss-Prot: sp|Q0V7V2|P2C42_ARATH Probable protein phosphatase 2C 42; TrEMBL-Plants: tr|G7IMT1|G7IMT1_MEDTR Serine/threonine phosphatase family, 2C domain protein; Found in the gene: LotjaGi6g1v0259600
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr6:57239669..57243794) extracted from Lotus japonicus Gifu genome v1.2.

ATGCTTCAGGCGTTGATGAATCTCTTCTCTCCGTGTTGGAAGCCGTTCAAGAACGGTGATGACTCTTCTGCCGGAGCCGG AGGAGGAGGAGGAGGAGGAGGCATTGTCGGAGGAGGAGGAGGAAAAGGTGAAGGCAAGGACGGCTTGCTCTGGTTCCGTG ACATCGGAAAGTACGGCTCCGGTGAATTCTCCATGGCCGTTGTTCAGGCCAACCAGGTTCTTGAAGACCAGAGCCAGATC GAGTCTGGTCCCCTCGGCACCTTCGTCGGGGTTTACGACGGCCACGGCGGCCCCCTCGCCGCCCGATTCGTCTGCGATCA CTTGTTCCGCGATTTCCAAGGTTCGCTCAATTCTCTCCCTCTCTCTCTCTCTTATGTAGGGTTTAGTGTTCATTTCTTGA TCGTGAGTTTATTGGAAGTTTCGAACTGTTAAAGTTAGCAACCCGTGATTTTCATTGATTCGCTTTTTCGTGAACATGTA AAGAGTTGAATAAATGCGCGCCATAAATACTGTTGTTTGATGAGCTTGCTATTTAGGAACTCTGTCTCTTTCGAAATCTT CTTGAGTTTTTCTTGTTAGAAATTGAATGTGTGGTTTGTGTTGTGTGTGATAAAGTGTTGCTTTCTGTGTTTGAAGAGTC AACTATTTGATTGAGATGTCTTGGACTTGGTGTTTGTGCAGCAATATCGGGTGAGTCACAGGGTGTTGTGACGGCTGAGA CCATTCGAGCAGCGTTCCTTCGAACAGAAGAGGGGTTCACGGCACATGTAACGGAATTATGGAATACTCAACCTCAAATT GCGACTAATGGGACGTGTTGTCTGGTTGGAGTGATTTTTCAGCAGACCCTCTTCGTGGCAAATCTTGGAGATTCTCGTTG TGTGCTGGGAAAGAAAGTTGGTAACACTGGTGGGGTTGCTGCAATTCAGCTGTCTACGGAGCACAACGCGAATCTTGAGG ATATTAGACAGGAGCTTAAAGAATTGCACCCTGACGATCCCCAAATTGTCGTCCTCAAACATGGAGTGTGGAGAGTGAAA GGCATTATTCAGGTAATTTTATAGGCTTTTGCCTCTAAAGGACTATCCTAACATGGCAACCTGTGTTTTACTTAAATGGG ATGATCGCTGATCAAATATTCATTAATTGCTTGGATTCTCTGTTATGTTTTCTTATTGAAGTGCTGTGCTGAAGAAACTT GTATATTGAGTTTTGATGATAAGATAGTGTTGGAAGCAACATTGTATTTTGTAAAGTCTGATACATGTGATCAACTTCAC CAACCCCTGTCTTCAAGTGTTTGTGGTTTATATGCTTAGTCTTGATTTGAATGGCAATGCAAAATGCTAAAATAAAGGAA AACTTATTGTGTGCCTAATATGCATGACGAAAAGAACTAAATCTGATAAGAATTGTAGTTTATATGAAGCACTCCATGAA GAAAATTCCCTTTTGTTTCTAGTCCTACTCTGTTGACATTGAGGATGTGTGTTAGCAAATTAATCAGTGCTTAAAATTTA TATGATCACGTTGCTACGCAAAATTTTGATTAGCGCTTGTCAACTATGAGACATTTCAAGCAAGTTGCTTTAACTTGAAA GTGGGGGGCTTAACTTATCTGAATTGTCACCTTGCTTTAAAACAATACATTGCCTAACTCAACCTTTGCTTACATACATT CTAGTGAGACTCTATATGCCACTATGGTTTGTCAAGTTCATATGACTAGGCTTGTTTACAATGATATTTCTGCACACATG CAAGGTATAGCCTTATAGCCATAGGTCTCGTTTATTTTCATAGGATTTCTTAATGGTATTTTTGGATATGTAGAGAAAAT GGATAGATAGAAATGAAGAGTTAATGGGATGATGGATTAAGAGAAAAATAAAAGAAAGAAGGGTCAAAACTCTTCTTTTG TTTGGCTGGATGGAAAATGGAGAAGAAAGAAAATGTAGTTGTGTTAAAATAATTTTTGCAACCTTTTACATAATGATGGG TAGGTAAGATGGGTAAATTTGTCATTTCATGCATAAAATTCTCCCTCCCATTTTCTTCTTATGAGGGAGTAGACAATTTT TTCGTAAGCTCTACCATGGTTTTTTAAGTAATTCTAGGTAAGAGACATAAATTATTGCAAGAGAAGCAGCACGAGAGTAA GAAAAAGTTGTATGAGATTGAGGAATTAGAGTGGGTGCGGTTTAGAGAGATCGAAAGGAAGTTTAGGTAATAGTTCAGTT TGGGCACACATCAAAATTAGCATGGGAAAGAAATTTTTATCATACATCAAAAAATATTATATCATGAGACTGCTTGTAGC AATAGGTGTTTCATAGCAGCACACTACAAGAGAATGTGTTTTTCATTTGTTTGATTGAAACAAATATTACTTTGTGTCCT CAAACTATATGAGGCCGTTAGTTATCAGTAGCAGTCATTTATTTAAAGTTTCAAAAGATTTAAACGATGTAAAAGAAAAA TATTTTTATCAGAACAATTTGAACTTTTTATGGTGGATGTGATCAGGAAAAGAAACATGTGATGGTTGCTGAGATTAGAA ATCAGCATTTTAAGTTAGTTGTCTACTAATGTATAATAGCCGGTTTTTATGTTTTTTAACTTTTTTTATAACTCCTTTTA CTTAGCTGGCTGTTGTTTTGTTTAATTACTACAAAGTTTGTAGGTTAACTTAGTTCAATTAGTGCATCTGTGAAATGACA CCATTTGCATTATAGTCATGGTTATGCATGAAGAAAATTGGATATCAGCTTTTCCAGTTTGATCCTCAGCTGCCTTTTCA ATTTGATTTATGATGTTAAATGTTTCAACTTTTCGATCTCCTGCAACCATTATCTTATTTGTCAGAATTGCTTTTCACAC TGTAATTATAACATCATCTCACCACTTCCATGATATTTGATGCAGGTTTCTAGATCTATAGGTGACTCGTATATGAAACA TGCGCAGTTTAATCGGGAACCTATTAATCCAAAATTCAGACTTCCTGAACCAATGAACATGCCTATCATGTCTGCTAATC CAACTATTCTTTCTCATCCTCTCCAACCAAGTGATTCCTTCCTTATATTTGCATCAGATGGTTTATGGGAGCACCTGAGT AATGAGCAAGCAGTTGATATTGTTCACAGCAATCCACGTGCGGTAAAATTCTTTTCTACTTTGTTTTTTTTTGTTTTCTC ATAAGATTTACTTGTGTATTGGATTGGTTCATGGTTTATTCGTGTTCATTTTATATAACCAGAAAATGTTTTGGTTTATT TGTTTTGCACTGGATTAATTAATCCATTGATTGAATACAGCATAGTACTGTCCTCTTTTTTTGTATCATTTCAGTTAACG GAATAGTGGCCGTAGTTACCAGTGTCTTAGGCTGACAGGTCATCCATGATAGCTCCCCATAGATTTGTGTTGCAAGACTC AAATCACTTGAATCTTATTTGTACTTTCTTGATGAGATTCAGATTTTACTCAGTCACCATTGTGGGACTCAGATCACTTG AATCTTAGTTGTACTTTCTTGATGAGATTCAGATTTTACTCAGTCACCATTGTAGCCTCCTATATAATAATTTATTTGTC TAGGCAATTTCATCTTTGTTTCCACCTATGCATTTCTTTTTGAGACACTTAATGATGAGGGAAACTTGTTATTCCCAATT TATGCATTGCTAGTTCTTGAAGGGTGCAATGCAGAGTAATTGAGCAGCATTTATAGGTTAAAGTTGTAATACAATTTTAT GATATGGCTGTGCATTGTTGGTTTTCCAGAAAAACAGAGAAAATTGAAGCGGTGATATTGATTCAGCTGGTTATTGTTTT TGTCAATGCCTTGCCTTTTGCTTGTTGATTCCAAAATTCCAGTGGTGCTCATGAACTGTGTTGGTTGATGCAGGGTAGTG CAAAGAGACTTGTGAAGGCTGCGCTGCAGGAAGCAGCAAGGAAACGTGAAATGAGATATTCGGACCTTCGAAAGATAGAC AAGAAGGTCCGGCGGCATTTTCATGACGATATAACTGTTATTGTTTTATTCTTAAATCACGACCTTATATCTAGAGGTTC AGTTCTAAACCCGCCACTCTCACTTCGAAGTGCTCTTGATCACTGA
Download Genomic Sequence

CDS sequence (LotjaGi6g1v0259600.3) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGACTCTTCTGCCGGAAGGTGAAGGCAAGGACGGCTTGCTCTGGTTCCGTGACATCGGAAAGTACGGCTCCGGTGAATT CTCCATGGCCGTTGTTCAGGCCAACCAGGTTCTTGAAGACCAGAGCCAGATCGAGTCTGGTCCCCTCGGCACCTTCGTCG GGGTTTACGACGGCCACGGCGGCCCCCTCGCCGCCCGATTCGTCTGCGATCACTTGTTCCGCGATTTCCAAGCAATATCG GGTGAGTCACAGGGTGTTGTGACGGCTGAGACCATTCGAGCAGCGTTCCTTCGAACAGAAGAGGGGTTCACGGCACATGT AACGGAATTATGGAATACTCAACCTCAAATTGCGACTAATGGGACGTGTTGTCTGGTTGGAGTGATTTTTCAGCAGACCC TCTTCGTGGCAAATCTTGGAGATTCTCGTTGTGTGCTGGGAAAGAAAGTTGGTAACACTGGTGGGGTTGCTGCAATTCAG CTGTCTACGGAGCACAACGCGAATCTTGAGGATATTAGACAGGAGCTTAAAGAATTGCACCCTGACGATCCCCAAATTGT CGTCCTCAAACATGGAGTGTGGAGAGTGAAAGGCATTATTCAGGTTTCTAGATCTATAGGTGACTCGTATATGAAACATG CGCAGTTTAATCGGGAACCTATTAATCCAAAATTCAGACTTCCTGAACCAATGAACATGCCTATCATGTCTGCTAATCCA ACTATTCTTTCTCATCCTCTCCAACCAAGTGATTCCTTCCTTATATTTGCATCAGATGGTTTATGGGAGCACCTGAGTAA TGAGCAAGCAGTTGATATTGTTCACAGCAATCCACGTGCGGGTAGTGCAAAGAGACTTGTGAAGGCTGCGCTGCAGGAAG CAGCAAGGAAACGTGAAATGAGATATTCGGACCTTCGAAAGATAGACAAGAAGGTCCGGCGGCATTTTCATGACGATATA ACTGTTATTGTTTTATTCTTAAATCACGACCTTATATCTAGAGGTTCAGTTCTAAACCCGCCACTCTCACTTCGAAGTGC TCTTGATCACTGA
Download CDS Sequence

Protein sequence (LotjaGi6g1v0259600.3) extracted from Lotus japonicus Gifu v1.2 Proteins.

MTLLPEGEGKDGLLWFRDIGKYGSGEFSMAVVQANQVLEDQSQIESGPLGTFVGVYDGHGGPLAARFVCDHLFRDFQAIS GESQGVVTAETIRAAFLRTEEGFTAHVTELWNTQPQIATNGTCCLVGVIFQQTLFVANLGDSRCVLGKKVGNTGGVAAIQ LSTEHNANLEDIRQELKELHPDDPQIVVLKHGVWRVKGIIQVSRSIGDSYMKHAQFNREPINPKFRLPEPMNMPIMSANP TILSHPLQPSDSFLIFASDGLWEHLSNEQAVDIVHSNPRAGSAKRLVKAALQEAARKREMRYSDLRKIDKKVRRHFHDDI TVIVLFLNHDLISRGSVLNPPLSLRSALDH
Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

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Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER
PTHR13832:SF325
8 345 338 4.1E-154 –
PANTHER
PTHR13832
8 345 338 4.1E-154
IPR015655
SMART
SM00332
13 325 313 3.7E-69
IPR001932
Gene3D
G3DSA:3.60.40.10
20 334 315 1.9E-80
IPR036457
ProSiteProfiles
PS51746
23 327 305 42.716
IPR001932
CDD
cd00143
27 327 301 3.55743E-61
IPR001932
SUPERFAMILY
SSF81606
35 328 294 6.02E-53
IPR036457
Pfam
PF00481
50 297 248 1.7E-37
IPR001932
ProSitePatterns
PS01032
52 60 9 -
IPR000222

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0003824
Molecular function Catalytic activity Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic.
Subterm of
GO:0004722
Molecular function Protein serine/threonine phosphatase activity Catalysis of the reaction: protein serine phosphate + H2O = protein serine + phosphate, and protein threonine phosphate + H2O = protein threonine + phosphate.
Subterm of
GO:0006470
Biological process Protein dephosphorylation The process of removing one or more phosphoric residues from a protein.
Subterm of
GO:0043169
Molecular function Cation binding Interacting selectively and non-covalently with cations, charged atoms or groups of atoms with a net positive charge.
Subterm of

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Expression data

Expression pattern

Expression pattern of LotjaGi6g1v0259600.3, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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