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LotjaGi6g1v0275200.2

Overview

Field Value
Gene ID LotjaGi6g1v0275200
Transcript ID LotjaGi6g1v0275200.2
Related isoforms 3
Lotus japonicus genome version Gifu v1.2
Description Cysteine desulfurase family protein; TAIR: AT1G08490.1 chloroplastic NIFS-like cysteine desulfurase; Swiss-Prot: sp|Q93WX6|CNIF1_ARATH Cysteine desulfurase 1, chloroplastic; TrEMBL-Plants: tr|A0A151REY6|A0A151REY6_CAJCA Uncharacterized protein; Found in the gene: LotjaGi6g1v0275200
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr6:59197312..59200896) extracted from Lotus japonicus Gifu genome v1.2.

ATGGAAGTTTTGCTGCCAAAACTTCCATCCTTCAACTTCTCAATCACTGCTAGAAGCTCATCATGTGTTAGGCTTAGGTT CCGCCGCGCATCGTCTCTCTCCGTTTGCGCTTCGACTGTCAATGAAGCAGTAGCTGAACCAAGTATTGGCTCCCCTTCTC TTGGTCACTCCACCAGACCCCATTTCCCAATACTTCACCAGGTATCTATGTATAACAAGCCTTAATTCAATTGTCTCATT CTTAACTAGCCTATCTACAATGGTGTTGCCGAATATCGGCTTTTATTAATATACATATGGTTTTTCGTTCCTCGATTTTG TTTATGCATATACTGCGCGAAATGTGGTTTTGATGTTCTTCTCCATGGAAGAATGGTATTTCTTATGTTGTTCTGGCACA TATTGTAAATTTATGATACTTTGATTCACTCCACAGGAAGTAAATGGCTCAAAGCTTGTTTACTTAGACAATGCAGCAAC TTCTCAGAAGCCCGCCGTTGTTTTGAAGGCATTGCAAAACTATTATGAAGCTTATAATTCGAATGTACACCGGGGCATAC ATTACCTGAGGTATTTAGTGTGTAATATTTGGAATTACATATGTAATTTTGAGACACTTTAATGTGTTTGTCTTGTCTAT CTGTGATTGCATAGATTGGTTAATGCTTTTTCTTGCGTAATTTTTATGGATGTAGTGCAAAGGCCACAGATGAGTTTGAA TCAGCTAGAAGGAAGGTTGCAGCTTTTGTAAATGCTTCTGATTCCAAAGAAATTGTGTTCACAAAAAATGCTACGGAAGC TATCAATCTTGTGGCTTATTCTTGGGGCCTGTCAAATTTAAAACCAGGAGATGAGGTATTTTATTTTAGGTTAATATTTT AATGAATCTCAAAAATAATTTTTAAGAGTTGAGGAGAGTATTAGGGTCTAATTTGAACTTACCAATAGTGGTGAATTTTT TTAATCACTAAAAATCTATTCATTAACATTTGGCATATGTGTTGCCATCATATTCTTGGCATGCCCTGTAAAATCTTCAG TTTTATTATTGCAGATCATACTTACAGTTGCTGAACATCACAGTGCGATTGTTCCGTGGCAACTAGTAGCTCAAAAAGTT GGGGCTGTTTTGAAATTTGTGGATTTAAACCAAGATGAAATTCCAGATATTGAGAAATTGAAAGAAATGCTCTCGAAGAA GACCAAAATAGTTGTTGTTCATCATGTTTCAAACGTGCTTGGTATGTTTCTCATCATAATTCTTCACATTGAAAATTCTA TTTTCTGAATGATACATTGAATTTATGCTCTCAAAATTGATGCACTTCCTGGATTTATTTCGTAGTTTTTTACATTAATG ATCTTTTTTATTAGGAACTTCAAACCATCCCTTATATCACAAAAGGGTGATTAGGTTTCAAATCCCAATACTAGATTGTT GAGTGTTTGTCCACCTTGAAGTTAAACTGATCTTCAGGCTGAGCTTATGCTAAATTTTCTAATATTTGATAAGCATTTAA GTGTATGTCCATCTTCACCCCACTGGGACTGATGAGGGACTCCTACTTGTATAAGCATTGCACCTAGGTTCGGTCAAACT TGTACGAACATAGAATCTTTCTGAATAAATTTGTGAAATGATAATTAGTTTATAGAAAACATTACATCCTTGATGCTTGT AAAGAGACTTTCGGACACTCATCTATCAGGGTATATCATATAAAAATATAAAATTTATATGCTATTTCAAATTTGTAACA TATTTTCCACAATCAGAGTACTTGTTACACACTTTTAGAATTTTTAGCTGAAATGGAGAAGTTTTCATATATTTGTACTT TGCTTTTCTGTAGCTTCTGTCCTCCCTATTAGAGATATTGCACATTGGGCACATGATGTTGGGGCAAAAGTGCTTGTAGA TGCCTGTCAGAGTGTTCCACACATGGTGGTTGACGTTCAGAGCCTTAATGTTGATTTTCTTGTTGCTTCTTCTCACAAGG TAGTTTTTATTACATATTTTTGTGATGTAACTCTTCCAAACTCGTGGAGTAAATTATCAAACATGTGTTTCAGATGTGCG GGCCAACGGGCATTGGGTTCTTATATGGTAAAATAGACATCTTGTCTTCCATGCCTCCATTCTTAGGTAAGTTATTAGCC ATTGTACTTAAATCTCCCCATAAAACATGAACAGCTAATTAAAATGCTACAAAATAAAATTGTTTACGGTCTGTTTTGGC ACCATGTTAATAAGATTGTCTTTTGAAGCTAAAGTATTTTGATGGCAACCTCTGCCTTGTTTTAGGTGGTGGTGAAATGA TTTCTGATGTATATCTTGATCATTCAACTTATGCCGAACCTCCATCCAGGTCTGTGAACTGGTTTTTCCATCAACTCAGG CTAGCATATTGTTAGGGTTTAAATTGTCCTAATAGTAACCGCAAGTAAAAAGGGGTCAAAAGGGATAATTTTTTTTATAT TTTTGTGCCTATAAAACTGGAAAACAATTGGAGGGAAAGATATTAAAAGAGCGATACGAACCAGAATCCTTATGGATTAA CAAGAAGGAGGACCTTCTTCCTAGGGAGAATCCCTTTGAAAAATATAATACTAAAGTCACACCCTTACATAAGGAGAGTA CTCCTATTTATAATAGCTAACCCTACTAAAGAAATAAATATAGACTTAACCACTAAACATAGTGACAAATTTTCTTAACT GTTGTTGCTTATACAATCAGTTACTTGTATCTTACTAAATGAGGCATTTTGACTGTTCTAGGTTTGAGGCTGGAACACCA GCTATTGGCGAAGCAATTGGTTTAGGAGCAGCAATTGATTACTTATCTGGGATTGGCATGCAAACCATACATGATTATGA GGTGAGTTGAACTTCAACTTCATAACAAATACTGCTAAAATTCAGACTAAAAGTGATGCATGAATTTGGAATATAACTTA TATGTACATGTTGGTGTAAAACTTCTTGTACGCTGTCATCCAGTCTTGTGTTGAATTTGGTCAATAAAACGTTGTCATTT TTTTACTTGCATTGAGATAAATTATATGTATATTTTGTATCAATAGGTGGAGCTGGGCACGTATCTGTATGAAAGGCTTC TTTCAGTCCCAAATATTCACATCTACGGGCCAGAGCCCTCAGAAAAAGTTGAACGAGCTGCCCTCTGTTCTTTCAATGTT GAGAATTTGCACCCCACTGATCTTGCAACATTTCTTGACCAACAGGTAAGAGATTAAGGACTATCCCCAGATATGTTCAT TTGCTTTGTCTCGAGACAGTTTAGTTTATACAATACACTGTCAACGCCTGAATTTAATGAAAAAAAATTAGTATAACTGA TCATGTTTGAAAATTTTCTTTTCTTGAATTGCAATTAACAATGTTCCATTTCAGCATGGAGTGGCTATCAGATCAGGTCA CCATTGTGCCCAGCCCCTCCATCGCTATATAGGAGTCAATGCAAGTGCACGTGCTAGCCTCTATTTCTATAACACTAAGG AGGATGTTGACAACTTTATCCAGGCCCTCCATGACACAGTGAGCTTCTTCAATTCATTCAAGTAG
Download Genomic Sequence

CDS sequence (LotjaGi6g1v0275200.2) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGGAAGTTTTGCTGCCAAAACTTCCATCCTTCAACTTCTCAATCACTGCTAGAAGCTCATCATGTGTTAGGCTTAGGTT CCGCCGCGCATCGTCTCTCTCCGTTTGCGCTTCGACTGTCAATGAAGCAGTAGCTGAACCAAGTATTGGCTCCCCTTCTC TTGGTCACTCCACCAGACCCCATTTCCCAATACTTCACCAGGAAGTAAATGGCTCAAAGCTTGTTTACTTAGACAATGCA GCAACTTCTCAGAAGCCCGCCGTTGTTTTGAAGGCATTGCAAAACTATTATGAAGCTTATAATTCGAATGTACACCGGGG CATACATTACCTGAGTGCAAAGGCCACAGATGAGTTTGAATCAGCTAGAAGGAAGGTTGCAGCTTTTGTAAATGCTTCTG ATTCCAAAGAAATTGTGTTCACAAAAAATGCTACGGAAGCTATCAATCTTGTGGCTTATTCTTGGGGCCTGTCAAATTTA AAACCAGGAGATGAGATCATACTTACAGTTGCTGAACATCACAGTGCGATTGTTCCGTGGCAACTAGTAGCTCAAAAAGT TGGGGCTGTTTTGAAATTTGTGGATTTAAACCAAGATGAAATTCCAGATATTGAGAAATTGAAAGAAATGCTCTCGAAGA AGACCAAAATAGTTGTTGTTCATCATGTTTCAAACGTGCTTGCTTCTGTCCTCCCTATTAGAGATATTGCACATTGGGCA CATGATGTTGGGGCAAAAGTGCTTGTAGATGCCTGTCAGAGTGTTCCACACATGGTGGTTGACGTTCAGAGCCTTAATGT TGATTTTCTTGTTGCTTCTTCTCACAAGATGTGCGGGCCAACGGGCATTGGGTTCTTATATGGTAAAATAGACATCTTGT CTTCCATGCCTCCATTCTTAGGTGGTGGTGAAATGATTTCTGATGTATATCTTGATCATTCAACTTATGCCGAACCTCCA TCCAGGTTTGAGGCTGGAACACCAGCTATTGGCGAAGCAATTGGTTTAGGAGCAGCAATTGATTACTTATCTGGGATTGG CATGCAAACCATACATGATTATGAGGTGGAGCTGGGCACGTATCTGTATGAAAGGCTTCTTTCAGTCCCAAATATTCACA TCTACGGGCCAGAGCCCTCAGAAAAAGTTGAACGAGCTGCCCTCTGTTCTTTCAATGTTGAGAATTTGCACCCCACTGAT CTTGCAACATTTCTTGACCAACAGCATGGAGTGGCTATCAGATCAGGTCACCATTGTGCCCAGCCCCTCCATCGCTATAT AGGAGTCAATGCAAGTGCACGTGCTAGCCTCTATTTCTATAACACTAAGGAGGATGTTGACAACTTTATCCAGGCCCTCC ATGACACAGTGAGCTTCTTCAATTCATTCAAGTAG
Download CDS Sequence

Protein sequence (LotjaGi6g1v0275200.2) extracted from Lotus japonicus Gifu v1.2 Proteins.

MEVLLPKLPSFNFSITARSSSCVRLRFRRASSLSVCASTVNEAVAEPSIGSPSLGHSTRPHFPILHQEVNGSKLVYLDNA ATSQKPAVVLKALQNYYEAYNSNVHRGIHYLSAKATDEFESARRKVAAFVNASDSKEIVFTKNATEAINLVAYSWGLSNL KPGDEIILTVAEHHSAIVPWQLVAQKVGAVLKFVDLNQDEIPDIEKLKEMLSKKTKIVVVHHVSNVLASVLPIRDIAHWA HDVGAKVLVDACQSVPHMVVDVQSLNVDFLVASSHKMCGPTGIGFLYGKIDILSSMPPFLGGGEMISDVYLDHSTYAEPP SRFEAGTPAIGEAIGLGAAIDYLSGIGMQTIHDYEVELGTYLYERLLSVPNIHIYGPEPSEKVERAALCSFNVENLHPTD LATFLDQQHGVAIRSGHHCAQPLHRYIGVNASARASLYFYNTKEDVDNFIQALHDTVSFFNSFK
Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

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Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER
PTHR43586
11 463 453 2.8E-233 –
PANTHER
PTHR43586:SF18
11 463 453 2.8E-233 –
TIGRFAM
TIGR01979
58 460 403 4.0E-177
IPR010970
SUPERFAMILY
SSF53383
58 456 399 2.13E-122
IPR015424
Gene3D
G3DSA:3.90.1150.10
59 453 395 2.3E-180
IPR015422
CDD
cd06453
75 453 379 0.0 –
Pfam
PF00266
75 449 375 1.2E-143
IPR000192
Gene3D
G3DSA:3.40.640.10
86 346 261 2.3E-180
IPR015421
ProSitePatterns
PS00595
267 286 20 -
IPR020578

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0003824
Molecular function Catalytic activity Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic.
Subterm of
GO:0006534
Biological process Cysteine metabolic process The chemical reactions and pathways involving cysteine, 2-amino-3-mercaptopropanoic acid.
Subterm of
GO:0030170
Molecular function Pyridoxal phosphate binding Interacting selectively and non-covalently with pyridoxal 5' phosphate, 3-hydroxy-5-(hydroxymethyl)-2-methyl4-pyridine carboxaldehyde 5' phosphate, the biologically active form of vitamin B6.
Subterm of
GO:0031071
Molecular function Cysteine desulfurase activity Catalysis of the reaction: L-cysteine + [enzyme]-cysteine = L-alanine + [enzyme]-S-sulfanylcysteine.
Subterm of

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Expression data

Expression pattern

Expression pattern of LotjaGi6g1v0275200.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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