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| Field | Value |
|---|---|
| Gene ID | LotjaGi6g1v0350300 |
| Transcript ID | LotjaGi6g1v0350300.1 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Pentatricopeptide repeat-containing protein, putative; TAIR: AT5G09450.1 Tetratricopeptide repeat (TPR)-like superfamily protein; Swiss-Prot: sp|Q94B59|PP372_ARATH Pentatricopeptide repeat-containing protein At5g09450, mitochondrial; TrEMBL-Plants: tr|I3RZT1|I3RZT1_LOTJA Uncharacterized protein; Found in the gene: LotjaGi6g1v0350300 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr6:66244681..66247387) extracted from Lotus japonicus Gifu genome v1.2.
GCCAGGCATGGAGCACATCAAGAAAACACATTTAGTTTCTCTTTCAACCCCTCTTTAGTGCTTGAGTTTTTTTTTGCTTG CGCATGTGATCGGCACCTCGTTTATAATCTGATTGGCTAACTGTGTGAAAAAAAAATTACAAGTCGATCCATCATCATTT CTCTCATTTTTAATCTTAAAGTTTATGTTTATTTCAAAAAAAAAAATCTTAAAGTTTATGTTGCTCTTAATATTGAAAGA TTAAATTGATATCAAATGAAACAGCAGCCAACAAGGTGAAGGAAGCAAGTGACAACCGCCACCAATGGCGTATCGCTCAC TGTTCCTCTCTCTCCGGCGGTAAGCCAATTCCTACTTGAATCGATTCTGCATCTTTGTATTTTTCTCCCAAATCCATTCA CCCAGGTACAATTTCTCATCATCACACAGGAATAGCGGTTTCATCAGCACCAACAGTCACCACCATCAATCACGTTGTCT CCTCAACAGAGCCAGATTTGTTTCTTCAGGTGCTGTGAGTACTGATTTTGTGGAAAGTGATGATGATCTAAGGAGCAGAA TCTTGAGGCTAAGGCTCCCCAAGCGAAGTGCCACAAACATTCTTCACAAATGGGTCCTTGAAGGGAACTCTGTTACAGTG TCTGAGCTTCGGGATATTGCCAAAGAGCTTAGAAGATCTCAGCGTTACAAACACGCTTTGGAGGTTTGCCATTTTTCCTT TGTTTTGGATATTTTAGTTCTGTGATGGTGAATTAGGGATAGTTTTTTTTTGTCTTTTTTAAAATGGTTAATATATTAAC TAGTTTGAGCATGTTATTGAATTTCCAAGAGTGATTATTAACAGTTCTGTTAAGTTTCAGAAGAAGATTGATTGCAAGGT AGTTCAGTTCACTTATTTCTGCAGTGCTTGTTGTTGTTGGAATGAAGGGTCCTCTTGAGTGTTTTTCAGTACTAACTAAG GCCCTTGATATATCACAACACTAGACAAGTTTCTTGAAGTGAATATATTTGAATTAGTTTTATTTGGTTGTTCCTGACTG TTTTTCTTGGTTCATTTTAGTTTCATATGTTAGTTTTGCTCTGAAAAACTATAATTTTCAATCAGGTTCAAATCCTTCCA ATGGTTCCTATCTTTTCTAGTGATTAGATTGCATTGGACTTGAAAAGCCTTTTTATGAATATGACTCTATTTTTTTCTGT TGGGTATATATCTTCACATGTACCAAAAAAAAAGGTATATATCTTCACAGTTTCTGACTCTTGAGGATTTCAGATATCAG AATGGATGATTACTCATGAAGAACATGGCTTATCAGACTCTGATTATGCTATGCGCATAGATTTGATGACGAAAGTTTTC GGCATTGACGCTGCAGAGCGATACTTTGAGGCTCTACCAGTTGCTGCAAAGACAAGTGAAACTTACACAGCCCTCCTCCA CTCTTATGCTGGAGCCAAAATGACTGAAAAAGCTGAGGAACTATATCAAAGGATAAAGGATTCTAACCTCTCCTTTGATG CCCTTACTTACAATGAAATGATGACTCTTTACATGTCAGTTGGGCAGGTTGAAAAGGTGCCATCAGTTGTTGAAGAACTA AAACAGCGAAATGTCTCCCCAGATATATTTACGTACAATTTATGGATAAGTTCCTGTGCTGCTACTCTTAATATTGATGA AGTTCGAAGGATTCTCGATGAAATGAGCCATGGTGCTGATTCTAATGAAAGTTGGACAAGATATTTGAACCTGGCCAACG TATACGTCACTGCAAGTCATCTTGATAATTCAAGTTCAAACTCACTTGCTGAGACCGAGAAGAGGATCACTCAAAGTCAA TGGATAACTTATGACTTCTTGATCATTCTTTATGCTGGGCTGGGAAGTAAGGATAAACTTGATCAGATATGGAATTCGTT GAGAATGACGAAACAGAAAATGATTAACAGGAATTATAGCTGCATAATTTCTGCATATCTGATGCTTGGTCATGTAAAAG AAGTAGGTGAGGTTATTGATCAGTGGAAGAACTCAACTATAGATTTTGATATGCTTGCGTGTAAAAAGATTATGGATGCT TTTAGAGCCACTGGCTTAGCTGATATAGCCAACAACCTGAATATGATTCTTATTGAGAAGAACATCAATCCAGGAAATAA CTGACTTTGAGATTTGAGATCAACTTGCTGCCTTCTTGAGGAAATTATGTATACTTCATTTGCAATTTGCTTATACAACT CTGAATGAATAACCTGCAGTGTAAGATTCCCTTGGCTAGGATCTTTGGTGTTGTCAAAGCCTTCAGTTTTCCCCTTTTTC CTTAATCGTAGTTGTAATGCTGCTGTCAGTATCAATTTTACTCAATATTCACCAATATGATATCATTTCATCCTACACAT AGTTTCAACAAATTTAAATTTCATCTGTTTGTCTTGTTTGCTACCTTTTGATTTTTGCATAAACTGATGTTTCTGTCTGA AAAGTTTAGCTCAAGCCTACGTATCATATTTGCATATTTGTTGGATAATTTTGGATACTTGTGTTTATGAAAAATCAAGT AAAGATAGTAGAAGTCACGTGCAGTGCCAAAAGCATGTATTTTAACTTTTAATCAAGTAATTTAATAAGGATTTTTAAAT TGCCAAATTACTCATTCGGGCATGTCATAGAATTTTTTCTATCTTTAAATGTAAATCTGTTCGGAAA
CDS sequence (LotjaGi6g1v0350300.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCGTATCGCTCACTGTTCCTCTCTCTCCGGCGGAATAGCGGTTTCATCAGCACCAACAGTCACCACCATCAATCACG TTGTCTCCTCAACAGAGCCAGATTTGTTTCTTCAGGTGCTGTGAGTACTGATTTTGTGGAAAGTGATGATGATCTAAGGA GCAGAATCTTGAGGCTAAGGCTCCCCAAGCGAAGTGCCACAAACATTCTTCACAAATGGGTCCTTGAAGGGAACTCTGTT ACAGTGTCTGAGCTTCGGGATATTGCCAAAGAGCTTAGAAGATCTCAGCGTTACAAACACGCTTTGGAGATATCAGAATG GATGATTACTCATGAAGAACATGGCTTATCAGACTCTGATTATGCTATGCGCATAGATTTGATGACGAAAGTTTTCGGCA TTGACGCTGCAGAGCGATACTTTGAGGCTCTACCAGTTGCTGCAAAGACAAGTGAAACTTACACAGCCCTCCTCCACTCT TATGCTGGAGCCAAAATGACTGAAAAAGCTGAGGAACTATATCAAAGGATAAAGGATTCTAACCTCTCCTTTGATGCCCT TACTTACAATGAAATGATGACTCTTTACATGTCAGTTGGGCAGGTTGAAAAGGTGCCATCAGTTGTTGAAGAACTAAAAC AGCGAAATGTCTCCCCAGATATATTTACGTACAATTTATGGATAAGTTCCTGTGCTGCTACTCTTAATATTGATGAAGTT CGAAGGATTCTCGATGAAATGAGCCATGGTGCTGATTCTAATGAAAGTTGGACAAGATATTTGAACCTGGCCAACGTATA CGTCACTGCAAGTCATCTTGATAATTCAAGTTCAAACTCACTTGCTGAGACCGAGAAGAGGATCACTCAAAGTCAATGGA TAACTTATGACTTCTTGATCATTCTTTATGCTGGGCTGGGAAGTAAGGATAAACTTGATCAGATATGGAATTCGTTGAGA ATGACGAAACAGAAAATGATTAACAGGAATTATAGCTGCATAATTTCTGCATATCTGATGCTTGGTCATGTAAAAGAAGT AGGTGAGGTTATTGATCAGTGGAAGAACTCAACTATAGATTTTGATATGCTTGCGTGTAAAAAGATTATGGATGCTTTTA GAGCCACTGGCTTAGCTGATATAGCCAACAACCTGAATATGATTCTTATTGAGAAGAACATCAATCCAGGAAATAACTGA
Protein sequence (LotjaGi6g1v0350300.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MAYRSLFLSLRRNSGFISTNSHHHQSRCLLNRARFVSSGAVSTDFVESDDDLRSRILRLRLPKRSATNILHKWVLEGNSV TVSELRDIAKELRRSQRYKHALEISEWMITHEEHGLSDSDYAMRIDLMTKVFGIDAAERYFEALPVAAKTSETYTALLHS YAGAKMTEKAEELYQRIKDSNLSFDALTYNEMMTLYMSVGQVEKVPSVVEELKQRNVSPDIFTYNLWISSCAATLNIDEV RRILDEMSHGADSNESWTRYLNLANVYVTASHLDNSSSNSLAETEKRITQSQWITYDFLIILYAGLGSKDKLDQIWNSLR MTKQKMINRNYSCIISAYLMLGHVKEVGEVIDQWKNSTIDFDMLACKKIMDAFRATGLADIANNLNMILIEKNINPGNN
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 38 | 397 | 360 | 9.0E-197 | – | |
| PANTHER | 38 | 397 | 360 | 9.0E-197 | – | |
| Gene3D | 86 | 292 | 207 | 1.0E-25 | ||
| ProSiteProfiles | 150 | 184 | 35 | 9.668 | ||
| Pfam | 153 | 181 | 29 | 2.2E-4 | ||
| TIGRFAM | 153 | 185 | 33 | 3.3E-6 | ||
| ProSiteProfiles | 185 | 219 | 35 | 10.139 | ||
| Pfam | 186 | 232 | 47 | 2.2E-9 | ||
| TIGRFAM | 188 | 221 | 34 | 1.4E-4 | ||
| ProSiteProfiles | 220 | 250 | 31 | 7.794 | ||
| ProSiteProfiles | 327 | 361 | 35 | 5.711 | ||
| Pfam | 331 | 356 | 26 | 1.2 | ||
| ProSiteProfiles | 362 | 396 | 35 | 5.656 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of LotjaGi6g1v0350300.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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