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Field | Value |
---|---|
Gene ID | LotjaGi6g1v0354600 |
Transcript ID | LotjaGi6g1v0354600.2 |
Related isoforms 2 | |
Lotus japonicus genome version | Gifu v1.2 |
Description | Aminotransferase; TAIR: AT2G13810.1 AGD2-like defense response protein 1; Swiss-Prot: sp|Q9ZQI7|ALD1_ARATH Aminotransferase ALD1; TrEMBL-Plants: tr|W0BWR0|W0BWR0_LOTJA L,L-diaminopimelate aminotransferase; Found in the gene: LotjaGi6g1v0354600 |
Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr6:66646709..66650300) extracted from Lotus japonicus Gifu genome v1.2.
GTATATAATTACAGGTCGTCATGCACATTGAAGAATCAAAGATTGAGAATTGGTATGCATATATAATTCATACTTGTTTG ATTCAATTTTTCATTTTTATGGTTTTATTTTCTTTATGCCCTTGGCCTTAGACTTATCATTTGTGATTGTCATGTGCAGG ACACCGCACGAAGGTACCCCGAAATGTAAACATGGAGAAACTGCAACATGGCTATTTATTTCCTGAGGTGCTTTTCAATA ATATTTCCACTTCTTGATTGTTTGTCTGAATCTTGTTTATCTCATGGAAATGCTGTTTTCAATTTTTATTTTTATTTACC ATCTCAATTGAACAGATTGTGCACTAAGTTTCTTTTTACCATTAGTACATTGCTACAATGAAAAAACAAATTCTGGGGAC CATTTGTACAGATTTTTCACTCCCTTGGTCCTTGTATATTCATTTTGTCATATGACATGCCTTACAATTTTAAGTTATAT GTGCTAAAAGCAAATTACTATCCTGATTGCTTCAGATTCAAAGACACCAGCTTATGCACTTAGAGAAGTATCCACACGCA AATGTGATAGATCTTGGAATTGGTGATACTACAGAACCCTTATCAACTATTGTAACATCAAGCATGGTGGATGTAAGTTA CAAAGGTTCTTTCTGTTTGGTCATCACATTTTTTTCCCTATATGTTGGTCCCTATATTCACTTATGTGGATTTTGGTTCC TGCTGCTAAAGTATGGTCCTTATATTTTCCTTGCATTTGGGTTGCTAAGGAACCCTTAGTTATTTGTGATTTCTAGAACT AAAAATAAAGCTAAGTGAATGCTTTTAATTTTGGTTTATTGACAGATTTAGGTCCATCTTTTTCCTCTATTAACTTGAGG AAGGAGAAGAGGTAACTTGTTTGAGAAATTAATATATTTTTGCAGTTTGTGCATGGCCTTTCAACAGAAAAAGGTTATAA AGGATATGGACCTGAGCAAGGTGAAAAGGTAACTTGTTTGTGAAATTAATATATTCTACTCTTTAAGATCCCAGAAATAA AATGTCATATCAAATGTATAAACTTCTTTTTCTTGTTATGCATGATGTTGGCCCCAATATGATGCGATAGTAAAGTGCTT CTGTATTGAAGTATATGCTAGTATCAACCTTGAGTCTGCAATATCTTTATCTACTTACTTCAACTTCCACTTATGGCATA GGAGATCAATGTACCATATGCCATTCAATTAAAATGTATATATTCTGGCAAAATGAAATTGCAGGCCTTGAGGAAAGAAA TTGCTGACACAATCTACAAAGATCTAGGGATAAAACCATCTGAGGTTTTTGTTTCAGATGGTGCACAGTGTGATATTTCT CGTCTTCAGGTATTCCATAAAATCATAATCACAGTTGTTTGTTGCACTCTACTTTATTCTTTTTCCCTTTTCAAATTCTT AGCAACTTTTTACCATTTCTGTACTAATACTATTTCTGTGGAGAGTTAGTTACTTGGTGTCTCATAACACCTGTGATAGT CTAATACCATTTCTATATTCTTCATATTTTGACGTTTTTCATATATCATCTTGGTACAGAACTAGGGATTGAGGGACCAA TTTCAGTAAAATTCCTATTATTGTTACTTTCTTGTGATTTAGTTCAATTAGTCTCATTCTCATTGTAAAGTAAGTACCTT TGCTAAGTGCTTAAATTAATATGAAGTGCTGACTTTGATTTGTCTCAATACCTGCAGCTGCTTATGGGTCCCAATCTGAA GATATTTGTACCGGATCCATCCTTTCCGGTATTATAATTTCTACGAGATTCATCTATCTAATCAATGTGATCTGTTAGAA ATATAATATAAAATCATTCATGTTTCTTCGCCCAACTGTTTTCATTTTGTTTTGTGTTTTAATAGTACAAAAAATAGTGA TAACAGTGCCCTTAGCCTTCCATCTTTGCTTCTTCTATCTTTTCACTATAACGTGCGACTTGTTTCAATGTGATCTCCAA GTGAATGCATGCTTGCATCACATCATCAAACATATTGTTTTTGATGATCTTGAATTCTTCTGAGGCAGGCCTACATAGAT TCAAGTGTCATAATTGGCCAGGCTGGCGAATTTGTATATGAAACTGGCAAGTATAAAAACATAGAATACATGACATGTGG ACCTCAAACCAACTTCTTTCCTGATCTGCATACTGCTTCAAGGGCAGATATAATTTTCTTTTGTTCTCCAAACAATCCCA CTGGTCATGCGGCAACAAGGAAGCAACTAGAGCAACTTGTGGATTTTGCCAAAGAGAATGGATCAATCATTATCTTTGAC TCTGCATATTCTGCCTATATCACAGATGATAGTCCTAAATCAATCTTTGAAATTTCTGGAGCCAGAGAGGTATGTCTTGC TCGTTTATTTCGCTAAGTCCCATTTTGTTATTTTCATAAGCATCTTGTAAACCTTTTCTTTCAATCCAGATACAGGATTT GCCAATTGGCACATGAATTATTTAGTTTCACTTTTTCAGGATGTTTGGATGGAGTGGTAAGTAGTTTGGGATTTGTTTTT GAAAGTTGAAACAATGCAGTTGGATGGTTAAGGAGGGAGACCCAAGCCACTCCATACTACTATCCCTTTTTTCATAATCC CCAAATTTTGGAGAATGGAGCTTCTTTCTTTTTTAGTTGTCATTTACAAATTTCATTCCTAGTTCTCTAAACTCTTTTCA CACCATTCTACACTTTGATTTTCCTTAGTTGCTCTAAACAAAAGTTTGACTGGTTTCCAAAATTTCCCTGCCTCCCTTGT GTTTTTTTTCCTGGTTAATCCTCGTATGTGGTCGATTAGTCTCACTACTTACAGGGCATTTTGTTTTGTTTCTTGCATGC ACTAATTCCACAATGGCAAGCTTAACCTCTTCCATTCTTCATTATGCTTTAAGGTTGCAATTGAAGTCTCGTCCTTCTCA AAATTTGCTGGCTTCACAGGCGTACGCCTTGGTTGGACTGTGGTCCCTGAAGAACTCTCATATTCAAATGGTTTCCCTGT TGTGCATGATTTCAACCGCATAATGTGCACATGCTTCAATGGAGCATCCAACATAGCTCAGGCCGGTGGACTAGCATGCC TTTCTCCCGAGGGTCTCAAGGTAAAATTCAAATTCCCTAAGAATCCATTTAACTTGCCAAATTCCTGCTTTCAAGTCTCA TCTCTAGTTTAGTTCCTAGACTAAACCCTATGAAAATTTTCTGGCATTGGTGTGATACTTGCTAAATATTATTTTGGAAA ATCTCAGGCCGTGCAGTCACATGTTGACAACTACATGGACAATGCAAGAATTTTGGTCGATGCTTTAACTTCTGTTGGTC TGAAAGTTTATGGTGGTAAAAATGCACCTTATGCTTGGGTCCATTTTCCAGGCTCAAATTCTTGGGATGTCTTCGCTGAA ATTCTTGAGAAGACACACATGATTACTGTTCCGGGCAGTGGTTTCGGTCCAGGTGGTGAAGAGTATATAAGAATTAGTGC TTTCGGCCAGAGGGATTCCATCATTGAAGCCTCAGAGAGATTCCAATGCCTTGTCTAATAGGGGAAAACTAA
CDS sequence (LotjaGi6g1v0354600.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGAGAAACTGCAACATGGCTATTTATTTCCTGAGATTCAAAGACACCAGCTTATGCACTTAGAGAAGTATCCACACGC AAATGTGATAGATCTTGGAATTGGTGATACTACAGAACCCTTATCAACTATTGTAACATCAAGCATGGTGGATTTTGTGC ATGGCCTTTCAACAGAAAAAGGTTATAAAGGATATGGACCTGAGCAAGGTGAAAAGGCCTTGAGGAAAGAAATTGCTGAC ACAATCTACAAAGATCTAGGGATAAAACCATCTGAGGTTTTTGTTTCAGATGGTGCACAGTGTGATATTTCTCGTCTTCA GCTGCTTATGGGTCCCAATCTGAAGATATTTGTACCGGATCCATCCTTTCCGGCCTACATAGATTCAAGTGTCATAATTG GCCAGGCTGGCGAATTTGTATATGAAACTGGCAAGTATAAAAACATAGAATACATGACATGTGGACCTCAAACCAACTTC TTTCCTGATCTGCATACTGCTTCAAGGGCAGATATAATTTTCTTTTGTTCTCCAAACAATCCCACTGGTCATGCGGCAAC AAGGAAGCAACTAGAGCAACTTGTGGATTTTGCCAAAGAGAATGGATCAATCATTATCTTTGACTCTGCATATTCTGCCT ATATCACAGATGATAGTCCTAAATCAATCTTTGAAATTTCTGGAGCCAGAGAGGTTGCAATTGAAGTCTCGTCCTTCTCA AAATTTGCTGGCTTCACAGGCGTACGCCTTGGTTGGACTGTGGTCCCTGAAGAACTCTCATATTCAAATGGTTTCCCTGT TGTGCATGATTTCAACCGCATAATGTGCACATGCTTCAATGGAGCATCCAACATAGCTCAGGCCGGTGGACTAGCATGCC TTTCTCCCGAGGGTCTCAAGGCCGTGCAGTCACATGTTGACAACTACATGGACAATGCAAGAATTTTGGTCGATGCTTTA ACTTCTGTTGGTCTGAAAGTTTATGGTGGTAAAAATGCACCTTATGCTTGGGTCCATTTTCCAGGCTCAAATTCTTGGGA TGTCTTCGCTGAAATTCTTGAGAAGACACACATGATTACTGTTCCGGGCAGTGGTTTCGGTCCAGGTGGTGAAGAGTATA TAAGAATTAGTGCTTTCGGCCAGAGGGATTCCATCATTGAAGCCTCAGAGAGATTCCAATGCCTTGTCTAA
Protein sequence (LotjaGi6g1v0354600.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MEKLQHGYLFPEIQRHQLMHLEKYPHANVIDLGIGDTTEPLSTIVTSSMVDFVHGLSTEKGYKGYGPEQGEKALRKEIAD TIYKDLGIKPSEVFVSDGAQCDISRLQLLMGPNLKIFVPDPSFPAYIDSSVIIGQAGEFVYETGKYKNIEYMTCGPQTNF FPDLHTASRADIIFFCSPNNPTGHAATRKQLEQLVDFAKENGSIIIFDSAYSAYITDDSPKSIFEISGAREVAIEVSSFS KFAGFTGVRLGWTVVPEELSYSNGFPVVHDFNRIMCTCFNGASNIAQAGGLACLSPEGLKAVQSHVDNYMDNARILVDAL TSVGLKVYGGKNAPYAWVHFPGSNSWDVFAEILEKTHMITVPGSGFGPGGEEYIRISAFGQRDSIIEASERFQCLV
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
---|---|---|---|---|---|---|
PANTHER | 1 | 394 | 394 | 3.5E-225 | – | |
PANTHER | 1 | 394 | 394 | 3.5E-225 | ||
TIGRFAM | 2 | 393 | 392 | 2.3E-152 | ||
SUPERFAMILY | 9 | 392 | 384 | 3.46E-72 | ||
Gene3D | 12 | 391 | 380 | 4.2E-137 | ||
Pfam | 28 | 378 | 351 | 1.5E-41 | ||
CDD | 30 | 393 | 364 | 3.60483E-77 | – | |
Gene3D | 39 | 294 | 256 | 4.2E-137 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
GO term | Namespace | Name | Definition | Relationships |
---|---|---|---|---|
Molecular function | Catalytic activity | Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic. | ||
Molecular function | Transaminase activity | Catalysis of the transfer of an amino group to an acceptor, usually a 2-oxo acid. | ||
Biological process | Biosynthetic process | The chemical reactions and pathways resulting in the formation of substances; typically the energy-requiring part of metabolism in which simpler substances are transformed into more complex ones. | ||
Molecular function | Pyridoxal phosphate binding | Interacting selectively and non-covalently with pyridoxal 5' phosphate, 3-hydroxy-5-(hydroxymethyl)-2-methyl4-pyridine carboxaldehyde 5' phosphate, the biologically active form of vitamin B6. |
Expression pattern of LotjaGi6g1v0354600.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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