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LotjaGi6g1v0354600.2

Overview

Field Value
Gene ID LotjaGi6g1v0354600
Transcript ID LotjaGi6g1v0354600.2
Related isoforms 2
Lotus japonicus genome version Gifu v1.2
Description Aminotransferase; TAIR: AT2G13810.1 AGD2-like defense response protein 1; Swiss-Prot: sp|Q9ZQI7|ALD1_ARATH Aminotransferase ALD1; TrEMBL-Plants: tr|W0BWR0|W0BWR0_LOTJA L,L-diaminopimelate aminotransferase; Found in the gene: LotjaGi6g1v0354600
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr6:66646709..66650300) extracted from Lotus japonicus Gifu genome v1.2.

GTATATAATTACAGGTCGTCATGCACATTGAAGAATCAAAGATTGAGAATTGGTATGCATATATAATTCATACTTGTTTG ATTCAATTTTTCATTTTTATGGTTTTATTTTCTTTATGCCCTTGGCCTTAGACTTATCATTTGTGATTGTCATGTGCAGG ACACCGCACGAAGGTACCCCGAAATGTAAACATGGAGAAACTGCAACATGGCTATTTATTTCCTGAGGTGCTTTTCAATA ATATTTCCACTTCTTGATTGTTTGTCTGAATCTTGTTTATCTCATGGAAATGCTGTTTTCAATTTTTATTTTTATTTACC ATCTCAATTGAACAGATTGTGCACTAAGTTTCTTTTTACCATTAGTACATTGCTACAATGAAAAAACAAATTCTGGGGAC CATTTGTACAGATTTTTCACTCCCTTGGTCCTTGTATATTCATTTTGTCATATGACATGCCTTACAATTTTAAGTTATAT GTGCTAAAAGCAAATTACTATCCTGATTGCTTCAGATTCAAAGACACCAGCTTATGCACTTAGAGAAGTATCCACACGCA AATGTGATAGATCTTGGAATTGGTGATACTACAGAACCCTTATCAACTATTGTAACATCAAGCATGGTGGATGTAAGTTA CAAAGGTTCTTTCTGTTTGGTCATCACATTTTTTTCCCTATATGTTGGTCCCTATATTCACTTATGTGGATTTTGGTTCC TGCTGCTAAAGTATGGTCCTTATATTTTCCTTGCATTTGGGTTGCTAAGGAACCCTTAGTTATTTGTGATTTCTAGAACT AAAAATAAAGCTAAGTGAATGCTTTTAATTTTGGTTTATTGACAGATTTAGGTCCATCTTTTTCCTCTATTAACTTGAGG AAGGAGAAGAGGTAACTTGTTTGAGAAATTAATATATTTTTGCAGTTTGTGCATGGCCTTTCAACAGAAAAAGGTTATAA AGGATATGGACCTGAGCAAGGTGAAAAGGTAACTTGTTTGTGAAATTAATATATTCTACTCTTTAAGATCCCAGAAATAA AATGTCATATCAAATGTATAAACTTCTTTTTCTTGTTATGCATGATGTTGGCCCCAATATGATGCGATAGTAAAGTGCTT CTGTATTGAAGTATATGCTAGTATCAACCTTGAGTCTGCAATATCTTTATCTACTTACTTCAACTTCCACTTATGGCATA GGAGATCAATGTACCATATGCCATTCAATTAAAATGTATATATTCTGGCAAAATGAAATTGCAGGCCTTGAGGAAAGAAA TTGCTGACACAATCTACAAAGATCTAGGGATAAAACCATCTGAGGTTTTTGTTTCAGATGGTGCACAGTGTGATATTTCT CGTCTTCAGGTATTCCATAAAATCATAATCACAGTTGTTTGTTGCACTCTACTTTATTCTTTTTCCCTTTTCAAATTCTT AGCAACTTTTTACCATTTCTGTACTAATACTATTTCTGTGGAGAGTTAGTTACTTGGTGTCTCATAACACCTGTGATAGT CTAATACCATTTCTATATTCTTCATATTTTGACGTTTTTCATATATCATCTTGGTACAGAACTAGGGATTGAGGGACCAA TTTCAGTAAAATTCCTATTATTGTTACTTTCTTGTGATTTAGTTCAATTAGTCTCATTCTCATTGTAAAGTAAGTACCTT TGCTAAGTGCTTAAATTAATATGAAGTGCTGACTTTGATTTGTCTCAATACCTGCAGCTGCTTATGGGTCCCAATCTGAA GATATTTGTACCGGATCCATCCTTTCCGGTATTATAATTTCTACGAGATTCATCTATCTAATCAATGTGATCTGTTAGAA ATATAATATAAAATCATTCATGTTTCTTCGCCCAACTGTTTTCATTTTGTTTTGTGTTTTAATAGTACAAAAAATAGTGA TAACAGTGCCCTTAGCCTTCCATCTTTGCTTCTTCTATCTTTTCACTATAACGTGCGACTTGTTTCAATGTGATCTCCAA GTGAATGCATGCTTGCATCACATCATCAAACATATTGTTTTTGATGATCTTGAATTCTTCTGAGGCAGGCCTACATAGAT TCAAGTGTCATAATTGGCCAGGCTGGCGAATTTGTATATGAAACTGGCAAGTATAAAAACATAGAATACATGACATGTGG ACCTCAAACCAACTTCTTTCCTGATCTGCATACTGCTTCAAGGGCAGATATAATTTTCTTTTGTTCTCCAAACAATCCCA CTGGTCATGCGGCAACAAGGAAGCAACTAGAGCAACTTGTGGATTTTGCCAAAGAGAATGGATCAATCATTATCTTTGAC TCTGCATATTCTGCCTATATCACAGATGATAGTCCTAAATCAATCTTTGAAATTTCTGGAGCCAGAGAGGTATGTCTTGC TCGTTTATTTCGCTAAGTCCCATTTTGTTATTTTCATAAGCATCTTGTAAACCTTTTCTTTCAATCCAGATACAGGATTT GCCAATTGGCACATGAATTATTTAGTTTCACTTTTTCAGGATGTTTGGATGGAGTGGTAAGTAGTTTGGGATTTGTTTTT GAAAGTTGAAACAATGCAGTTGGATGGTTAAGGAGGGAGACCCAAGCCACTCCATACTACTATCCCTTTTTTCATAATCC CCAAATTTTGGAGAATGGAGCTTCTTTCTTTTTTAGTTGTCATTTACAAATTTCATTCCTAGTTCTCTAAACTCTTTTCA CACCATTCTACACTTTGATTTTCCTTAGTTGCTCTAAACAAAAGTTTGACTGGTTTCCAAAATTTCCCTGCCTCCCTTGT GTTTTTTTTCCTGGTTAATCCTCGTATGTGGTCGATTAGTCTCACTACTTACAGGGCATTTTGTTTTGTTTCTTGCATGC ACTAATTCCACAATGGCAAGCTTAACCTCTTCCATTCTTCATTATGCTTTAAGGTTGCAATTGAAGTCTCGTCCTTCTCA AAATTTGCTGGCTTCACAGGCGTACGCCTTGGTTGGACTGTGGTCCCTGAAGAACTCTCATATTCAAATGGTTTCCCTGT TGTGCATGATTTCAACCGCATAATGTGCACATGCTTCAATGGAGCATCCAACATAGCTCAGGCCGGTGGACTAGCATGCC TTTCTCCCGAGGGTCTCAAGGTAAAATTCAAATTCCCTAAGAATCCATTTAACTTGCCAAATTCCTGCTTTCAAGTCTCA TCTCTAGTTTAGTTCCTAGACTAAACCCTATGAAAATTTTCTGGCATTGGTGTGATACTTGCTAAATATTATTTTGGAAA ATCTCAGGCCGTGCAGTCACATGTTGACAACTACATGGACAATGCAAGAATTTTGGTCGATGCTTTAACTTCTGTTGGTC TGAAAGTTTATGGTGGTAAAAATGCACCTTATGCTTGGGTCCATTTTCCAGGCTCAAATTCTTGGGATGTCTTCGCTGAA ATTCTTGAGAAGACACACATGATTACTGTTCCGGGCAGTGGTTTCGGTCCAGGTGGTGAAGAGTATATAAGAATTAGTGC TTTCGGCCAGAGGGATTCCATCATTGAAGCCTCAGAGAGATTCCAATGCCTTGTCTAATAGGGGAAAACTAA
Download Genomic Sequence

CDS sequence (LotjaGi6g1v0354600.2) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGGAGAAACTGCAACATGGCTATTTATTTCCTGAGATTCAAAGACACCAGCTTATGCACTTAGAGAAGTATCCACACGC AAATGTGATAGATCTTGGAATTGGTGATACTACAGAACCCTTATCAACTATTGTAACATCAAGCATGGTGGATTTTGTGC ATGGCCTTTCAACAGAAAAAGGTTATAAAGGATATGGACCTGAGCAAGGTGAAAAGGCCTTGAGGAAAGAAATTGCTGAC ACAATCTACAAAGATCTAGGGATAAAACCATCTGAGGTTTTTGTTTCAGATGGTGCACAGTGTGATATTTCTCGTCTTCA GCTGCTTATGGGTCCCAATCTGAAGATATTTGTACCGGATCCATCCTTTCCGGCCTACATAGATTCAAGTGTCATAATTG GCCAGGCTGGCGAATTTGTATATGAAACTGGCAAGTATAAAAACATAGAATACATGACATGTGGACCTCAAACCAACTTC TTTCCTGATCTGCATACTGCTTCAAGGGCAGATATAATTTTCTTTTGTTCTCCAAACAATCCCACTGGTCATGCGGCAAC AAGGAAGCAACTAGAGCAACTTGTGGATTTTGCCAAAGAGAATGGATCAATCATTATCTTTGACTCTGCATATTCTGCCT ATATCACAGATGATAGTCCTAAATCAATCTTTGAAATTTCTGGAGCCAGAGAGGTTGCAATTGAAGTCTCGTCCTTCTCA AAATTTGCTGGCTTCACAGGCGTACGCCTTGGTTGGACTGTGGTCCCTGAAGAACTCTCATATTCAAATGGTTTCCCTGT TGTGCATGATTTCAACCGCATAATGTGCACATGCTTCAATGGAGCATCCAACATAGCTCAGGCCGGTGGACTAGCATGCC TTTCTCCCGAGGGTCTCAAGGCCGTGCAGTCACATGTTGACAACTACATGGACAATGCAAGAATTTTGGTCGATGCTTTA ACTTCTGTTGGTCTGAAAGTTTATGGTGGTAAAAATGCACCTTATGCTTGGGTCCATTTTCCAGGCTCAAATTCTTGGGA TGTCTTCGCTGAAATTCTTGAGAAGACACACATGATTACTGTTCCGGGCAGTGGTTTCGGTCCAGGTGGTGAAGAGTATA TAAGAATTAGTGCTTTCGGCCAGAGGGATTCCATCATTGAAGCCTCAGAGAGATTCCAATGCCTTGTCTAA
Download CDS Sequence

Protein sequence (LotjaGi6g1v0354600.2) extracted from Lotus japonicus Gifu v1.2 Proteins.

MEKLQHGYLFPEIQRHQLMHLEKYPHANVIDLGIGDTTEPLSTIVTSSMVDFVHGLSTEKGYKGYGPEQGEKALRKEIAD TIYKDLGIKPSEVFVSDGAQCDISRLQLLMGPNLKIFVPDPSFPAYIDSSVIIGQAGEFVYETGKYKNIEYMTCGPQTNF FPDLHTASRADIIFFCSPNNPTGHAATRKQLEQLVDFAKENGSIIIFDSAYSAYITDDSPKSIFEISGAREVAIEVSSFS KFAGFTGVRLGWTVVPEELSYSNGFPVVHDFNRIMCTCFNGASNIAQAGGLACLSPEGLKAVQSHVDNYMDNARILVDAL TSVGLKVYGGKNAPYAWVHFPGSNSWDVFAEILEKTHMITVPGSGFGPGGEEYIRISAFGQRDSIIEASERFQCLV
Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

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Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER
PTHR43144:SF5
1 394 394 3.5E-225 –
PANTHER
PTHR43144
1 394 394 3.5E-225
IPR019942
TIGRFAM
TIGR03542
2 393 392 2.3E-152
IPR019942
SUPERFAMILY
SSF53383
9 392 384 3.46E-72
IPR015424
Gene3D
G3DSA:3.90.1150.10
12 391 380 4.2E-137
IPR015422
Pfam
PF00155
28 378 351 1.5E-41
IPR004839
CDD
cd00609
30 393 364 3.60483E-77 –
Gene3D
G3DSA:3.40.640.10
39 294 256 4.2E-137
IPR015421

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0003824
Molecular function Catalytic activity Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic.
Subterm of
GO:0008483
Molecular function Transaminase activity Catalysis of the transfer of an amino group to an acceptor, usually a 2-oxo acid.
Subterm of
GO:0009058
Biological process Biosynthetic process The chemical reactions and pathways resulting in the formation of substances; typically the energy-requiring part of metabolism in which simpler substances are transformed into more complex ones.
Subterm of
GO:0030170
Molecular function Pyridoxal phosphate binding Interacting selectively and non-covalently with pyridoxal 5' phosphate, 3-hydroxy-5-(hydroxymethyl)-2-methyl4-pyridine carboxaldehyde 5' phosphate, the biologically active form of vitamin B6.
Subterm of

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Expression data

Expression pattern

Expression pattern of LotjaGi6g1v0354600.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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