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| Field | Value |
|---|---|
| Gene ID | LotjaGi6g1v0362500 |
| Transcript ID | LotjaGi6g1v0362500.3 |
| Related isoforms 2 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Chaperone protein DnaJ; TAIR: AT3G11450.1 DnaJ and Myb-like DNA-binding domain-containing protein; Swiss-Prot: sp|Q7TQ20|DNJC2_RAT DnaJ homolog subfamily C member 2; TrEMBL-Plants: tr|A0A0L9VGQ7|A0A0L9VGQ7_PHAAN Uncharacterized protein; Found in the gene: LotjaGi6g1v0362500 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr6:67433325..67435286) extracted from Lotus japonicus Gifu genome v1.2.
ATGGCTGTACATAGGAAATCTCTTCTTATTGCTTACTCGCCAGAAATTGTAGATGGGCAGCCGATTTATGTTTCTTCGAA CTGTCTTCCTATCAAGGCCTTGAAAAAATATGAACCTGCAGGTCACTCTTTCCATTCTGTCGCACTCAAGCTCCGTGGTG TCCAGGAAGATAATAAAGAAGCTGATAATAAAAAAGTAGCTGATGATAAGGAACAGACATACCTTCCATCTGATTCTTAT AGCAGCAAGAGCAAGAAGAAATCTGGGTCTGGAGACAAGCAGCAAGATCACTATGCATTATTGGGTCTGAGCCATCTAAG GTATCTTGCTACAGAGGATCAAATACGTAAAAGCTATCGTGAAACTGCCTTGAGGTTTCATCCTGACAAACAGGCTTCTC TTCTTCTCGCTGAGGAAACTGAAGCTGCGAAGCAGGCAAAGAAGGATGAAATAGAAACTCACTTCAAGGCAATCCAAGAA GCATATGAAGTGTTGGTTGATCCTCTGAAGAGAAGAATTTATGATTCTACTGATGAGTTTGATGATGAAATCCCCACAGA CTGTGCTCCACAAGACTTCTTCAAGGTGTTTGGCCCTGCTTTTATGAGGAATGGGCGGTGGTCAGTTAACCAGTCAGTTC CATCACTGGGTGATGATAATACTCCATTGAAAGAAGTTGATACTTTCTATGATTTTTGGTACTCCTTCAAAAGCTGGAGG GAGTTTCCCCATGATGAAGAGTTTGATCTTGAGCAAGCTGAATCTCGAGACCATAGGAGGTGGATGGAAAGGCAGAATGC AAAACTGTCTGAAAAGGCTAGGAAGGAAGAGTATGCAAGGGTACGCACACTTGTTGATAATGCTTATAAGAGAGACCCCA GAATATTGAGAAGAAAGGAATTGCAAAAAGCTGAGAAGCAAAGGAAAAAGGAGGCTAAGTTCCTGGAAAAGAAGTTGCAG GAAGAAGAAGCAGTCAGAATTGCAGAAGAGGAGAGGCGACGAAAAGAAGAGGAAGATAGACAAGCTGCAGAAGCTGCTTC ACAACAGAAGAAGGTGAAGGAGAAGGAGAAAAAGCTGTTGCGGAAGGAACGAGCACGCCTTCGAACTCTCTCAGGACCTA TCCTGTCACAGCATTTACTGGAAATTTCTGAAGATGATGTCGAAAAGCTTTGCATGTCGCTTGATATTGAGCACTTGAGG GGTTTGTGTGAGAAAATGGAAGACAGAAAGGAGTTAGAGCAAGCAGAAGTTATAAGAGATGCACTGAGTTGTAAGGAAGG CATGGCTGATGTGAAATATGAGAAAACTATTCAACAAAATGGTTCTATCAAGGCTAATGGCAGCAGGGGTTCAAAAAGCA AGACTGAGAAGCGGGAGAAACCTTGGAGCAAAGAAGAGATTGAGCTTTTGAGGAAAGGAATGCAAAAATATCCCAAAGGA ACTTCTCGGAGATGGGAGGTTATCTCAGAATACATTGGTACTGGAAGATCAGTTGATGAAATTATGAAGGCAACTAAAAC TGTTCTCCTCCAGAAGCCTGATTCATCCAAAGCTTTTGACGCTTTTCTTGAGAAAAGGAAACCTGCCGTGTCAATTGCAT CTCCGCTGACAACCAGAGAAGAAGTGGAAGGGGCACCAACAAATCCTGAGACTGGAAAGCCTGAAAATAGTGATGCTTCC TCAAAAAAAGACAACTTGGAAGATTCCCAAGGCAAAAGTACAGATGATCAGAACTCTACTGCTGTTGCTGCAAATGGAGT TTCTTCCTCTAGTTCAGATCAAGACATATGGTCTGCAGTGCAGGAAAGAGCACTTGTTCAAGCTTTAAAAGCCTTTCCAA AGGAAGCTAGCCAGAGATGGGAACGGGTAGCAGCAGCTGTACCTGGGAAGACTGTGAATCAGTGCAAGAAAAAATTTACC GCGATGAAGGAGAGTTTCAGGAATAAGAAAGGTGCAGTTTAA
CDS sequence (LotjaGi6g1v0362500.3) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCTGTACATAGGAAATCTCTTCTTATTGCTTACTCGCCAGAAATTGTAGATGGGCAGCCGATTTATGTTTCTTCGAA CTGTCTTCCTATCAAGGCCTTGAAAAAATATGAACCTGCAGGTCACTCTTTCCATTCTGTCGCACTCAAGCTCCGTGGTG TCCAGGAAGATAATAAAGAAGCTGATAATAAAAAAGTAGCTGATGATAAGGAACAGACATACCTTCCATCTGATTCTTAT AGCAGCAAGAGCAAGAAGAAATCTGGGTCTGGAGACAAGCAGCAAGATCACTATGCATTATTGGGTCTGAGCCATCTAAG GTATCTTGCTACAGAGGATCAAATACGTAAAAGCTATCGTGAAACTGCCTTGAGGTTTCATCCTGACAAACAGGCTTCTC TTCTTCTCGCTGAGGAAACTGAAGCTGCGAAGCAGGCAAAGAAGGATGAAATAGAAACTCACTTCAAGGCAATCCAAGAA GCATATGAAGTGTTGGTTGATCCTCTGAAGAGAAGAATTTATGATTCTACTGATGAGTTTGATGATGAAATCCCCACAGA CTGTGCTCCACAAGACTTCTTCAAGGTGTTTGGCCCTGCTTTTATGAGGAATGGGCGGTGGTCAGTTAACCAGTCAGTTC CATCACTGGGTGATGATAATACTCCATTGAAAGAAGTTGATACTTTCTATGATTTTTGGTACTCCTTCAAAAGCTGGAGG GAGTTTCCCCATGATGAAGAGTTTGATCTTGAGCAAGCTGAATCTCGAGACCATAGGAGGTGGATGGAAAGGCAGAATGC AAAACTGTCTGAAAAGGCTAGGAAGGAAGAGTATGCAAGGGTACGCACACTTGTTGATAATGCTTATAAGAGAGACCCCA GAATATTGAGAAGAAAGGAATTGCAAAAAGCTGAGAAGCAAAGGAAAAAGGAGGCTAAGTTCCTGGAAAAGAAGTTGCAG GAAGAAGAAGCAGTCAGAATTGCAGAAGAGGAGAGGCGACGAAAAGAAGAGGAAGATAGACAAGCTGCAGAAGCTGCTTC ACAACAGAAGAAGGTGAAGGAGAAGGAGAAAAAGCTGTTGCGGAAGGAACGAGCACGCCTTCGAACTCTCTCAGGACCTA TCCTGTCACAGCATTTACTGGAAATTTCTGAAGATGATGTCGAAAAGCTTTGCATGTCGCTTGATATTGAGCACTTGAGG GGTTTGTGTGAGAAAATGGAAGACAGAAAGGAGTTAGAGCAAGCAGAAGTTATAAGAGATGCACTGAGTTGTAAGGAAGG CATGGCTGATGTGAAATATGAGAAAACTATTCAACAAAATGGTTCTATCAAGGCTAATGGCAGCAGGGGTTCAAAAAGCA AGACTGAGAAGCGGGAGAAACCTTGGAGCAAAGAAGAGATTGAGCTTTTGAGGAAAGGAATGCAAAAATATCCCAAAGGA ACTTCTCGGAGATGGGAGGTTATCTCAGAATACATTGGTACTGGAAGATCAGTTGATGAAATTATGAAGGCAACTAAAAC TGTTCTCCTCCAGAAGCCTGATTCATCCAAAGCTTTTGACGCTTTTCTTGAGAAAAGGAAACCTGCCGTGTCAATTGCAT CTCCGCTGACAACCAGAGAAGAAGTGGAAGGGGCACCAACAAATCCTGAGACTGGAAAGCCTGAAAATAGTGATGCTTCC TCAAAAAAAGACAACTTGGAAGATTCCCAAGCTTCCTCTAGTTCAGATCAAGACATATGGTCTGCAGTGCAGGAAAGAGC ACTTGTTCAAGCTTTAAAAGCCTTTCCAAAGGAAGCTAGCCAGAGATGGGAACGGGTAGCAGCAGCTGTACCTGGGAAGA CTGTGAATCAGTGCAAGAAAAAATTTACCGCGATGAAGGAGAGTTTCAGGAATAAGAAAGGTGCAGTTTAA
Protein sequence (LotjaGi6g1v0362500.3) extracted from Lotus japonicus Gifu v1.2 Proteins.
MAVHRKSLLIAYSPEIVDGQPIYVSSNCLPIKALKKYEPAGHSFHSVALKLRGVQEDNKEADNKKVADDKEQTYLPSDSY SSKSKKKSGSGDKQQDHYALLGLSHLRYLATEDQIRKSYRETALRFHPDKQASLLLAEETEAAKQAKKDEIETHFKAIQE AYEVLVDPLKRRIYDSTDEFDDEIPTDCAPQDFFKVFGPAFMRNGRWSVNQSVPSLGDDNTPLKEVDTFYDFWYSFKSWR EFPHDEEFDLEQAESRDHRRWMERQNAKLSEKARKEEYARVRTLVDNAYKRDPRILRRKELQKAEKQRKKEAKFLEKKLQ EEEAVRIAEEERRRKEEEDRQAAEAASQQKKVKEKEKKLLRKERARLRTLSGPILSQHLLEISEDDVEKLCMSLDIEHLR GLCEKMEDRKELEQAEVIRDALSCKEGMADVKYEKTIQQNGSIKANGSRGSKSKTEKREKPWSKEEIELLRKGMQKYPKG TSRRWEVISEYIGTGRSVDEIMKATKTVLLQKPDSSKAFDAFLEKRKPAVSIASPLTTREEVEGAPTNPETGKPENSDAS SKKDNLEDSQASSSSDQDIWSAVQERALVQALKAFPKEASQRWERVAAAVPGKTVNQCKKKFTAMKESFRNKKGAV
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 6 | 633 | 628 | 1.3E-228 | – | |
| PANTHER | 6 | 633 | 628 | 1.3E-228 | – | |
| MobiDBLite | 55 | 94 | 40 | - | – | |
| MobiDBLite | 55 | 72 | 18 | - | – | |
| Gene3D | 79 | 190 | 112 | 2.6E-20 | ||
| SUPERFAMILY | 94 | 202 | 109 | 9.81E-20 | ||
| SMART | 95 | 170 | 76 | 6.8E-14 | ||
| ProSiteProfiles | 96 | 178 | 83 | 18.425 | ||
| CDD | 96 | 167 | 72 | 1.4923E-12 | ||
| Pfam | 96 | 175 | 80 | 4.3E-17 | ||
| PRINTS | 101 | 119 | 19 | 3.9E-8 | ||
| PRINTS | 119 | 134 | 16 | 3.9E-8 | ||
| PRINTS | 150 | 170 | 21 | 3.9E-8 | ||
| ProSitePatterns | 155 | 174 | 20 | - | ||
| Coils | 298 | 370 | 73 | - | – | |
| MobiDBLite | 329 | 357 | 29 | - | – | |
| Coils | 396 | 416 | 21 | - | – | |
| MobiDBLite | 440 | 462 | 23 | - | – | |
| Gene3D | 453 | 512 | 60 | 1.3E-15 | – | |
| ProSiteProfiles | 454 | 509 | 56 | 6.899 | ||
| SMART | 458 | 511 | 54 | 8.0E-7 | ||
| Pfam | 460 | 501 | 42 | 1.6E-5 | ||
| SUPERFAMILY | 460 | 504 | 45 | 7.02E-8 | ||
| CDD | 461 | 503 | 43 | 3.68738E-5 | ||
| MobiDBLite | 533 | 578 | 46 | - | – | |
| Gene3D | 570 | 636 | 67 | 1.8E-14 | – | |
| ProSiteProfiles | 575 | 630 | 56 | 8.604 | ||
| SUPERFAMILY | 576 | 625 | 50 | 1.35E-8 | ||
| SMART | 576 | 628 | 53 | 2.4E-8 | ||
| CDD | 580 | 626 | 47 | 1.45395E-6 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | DNA binding | Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid). |
Expression pattern of LotjaGi6g1v0362500.3, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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