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| Field | Value |
|---|---|
| Gene ID | LotjaGi6g1v0363900 |
| Transcript ID | LotjaGi6g1v0363900.4 |
| Related isoforms 4 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Pentatricopeptide repeat-containing protein; TAIR: AT1G26900.1 Pentatricopeptide repeat (PPR) superfamily protein; Swiss-Prot: sp|Q9ZVG8|PPR60_ARATH Pentatricopeptide repeat-containing protein At1g26900, mitochondrial; TrEMBL-Plants: tr|G7IPV3|G7IPV3_MEDTR PPR containing plant-like protein; Found in the gene: LotjaGi6g1v0363900 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr6:67542731..67547626) extracted from Lotus japonicus Gifu genome v1.2.
CACTATACACTAACTTACAATTTTAGTCAAAGTTACTCATCCAAACGTAAATCACGTCTTTGTCAGATTCAATTTTATCC GATCCAAATCTCCTAACTGATCCAAACATATCCAATGTTGCCCAGGCTCCACAAAATTTCTGGATCCGCCACTGCCTACG ACAACATCAACATGCATGGCATCACAAACACCACTCTTGCATTGTTGAACTCGTGCAAAAACACCTCTGATATTTGTCAA CTTCATGCTCGCATGGTTAAGACCGCTCTCACCAACGTTCCTTTCACTCTCAGCAAGCTTCTCTATGCTTCCATTCTCGA CATGGACTATGCAGCTTCCATTTTCAGCCACATTCAAACCCCCAATCTTTTCATGTTCAACACAATGCTCAGAGGCTATT CAATCAGTCATTACCCCAATAAAGCTTTGCCCATTTTCAATCAACTCAGGAATCAGAGGAGTGAGCTTGACCGGTTCTCT TTCGTTGCGGTTCTCAAAGCATGTGGTCGAGGTTCTCATGTTAGTTTTGGCCAAGGGGTCCATGGGATTGCAGTGAGGTC TGGGAATGGGATGTTTGTTGATGTTAAGAATACCCTTTTGCGTTTTTATTGTGTTTGGAGAAGAATTGAAGATGCACATA AGCTGTTTGATGAGTTTCCTGAAGGAAATGACTTAGTCTCTTGGAACACTTTGATGGGTGGGTGTCTTGTTGTTTCTCAG CCTAATTTGGTTTTTGATTTGTTTAGGAAGATGTGTTGGAGTGGGCTTAGAGCTAGTGCTGCCACCGTCGTGATCCTTTT GCCAGCAGCCGGTGATAGAGGGGACTTTGTTGTTGGGAAGTCCCTCCATGGTTACTGTATCCAAATTGGACTTAGTTCTC ATTTGAATGTTCTTACTGCATTGATAGATATGTATGCGAAAATTGGTCGTGTGCATTGGGGGCGTAAGATTTTCGATGGT CTTGTTGAAAAGGATGTTGTCTTATGGAATTGTTTAATAGGAAATTATGCAAGGAATGGTTTGGTAGGAGAAGCGGTGTA TTTATTACAGCAAATGAGAATTCAAGGAATGAAAACTAATTCTTCTACCTTTGTGGGGCTGCTTTCAGCTTGCCCTGCAT CCGAATCTATACATCTAGTTCGTCACGTTACTAGTTTTATTGAAGAGGAGAAACTACAACTGGATGCAGTTCTGGGAACA GCTCTTGTTGATATGTGTGCTAAATGTGGCTTTCTAGATGAGGCTATGGGCATATTTGAGAGGATGGAAGATAAAGATGT GAAATCTTGGACAGCCATGATTTCAGGTCATGGAGTTCATGGCCAGCCAACTAAGGCCATTAGGCTTTTCAATAGGATGG AGAACGAGGGGTTTAAACCAAATGGAGTCACCTTTTTGGCAATTCTGACTGCTTGTAGTCATGGAGGACTTGTAATTGAG GGGATGTATATTTTTAAGCACATGGTTCAGGAATTTGGCTTTTCGCCACATATTGAGCATTATGGATGTCTTATTGATCT CTTGGGTCGAGCAGGGATGCTACATGAAGCATATAAACTAATCAAGAGCTTGCCAATTAAGGGTGATGCTACTGCATGGC GTACACTGCTTTCTGCTTGCCGAGTCTATGGAGATGTTAAATTGGCGGAGTATGTAAAAGATGTCATAAACAACATTTAT GCAGCGCATCCTACAGATTCCCTCCTCATTTCTAGCACTTATGCAGCTGCTGGAAGAATCTCAGATCTTATACCAATGCA AGAAATAAAACAAACAAATGTTGTAGTAGAAAATTATGGGTTACATGAAAAAAAGGGAGGAAGTACAGTAAAGGAAGCTG GACTCAGCTGGGTTGTAATTGATAATTAGGGATGAGAATACTACAGGTTCACCAACAAGCATTAACTCTATTACACAAAA TGGTGGCCTCTATTGTGCACGAAAACTGCAAATGCAAGGTCTGGTTAACTGTAGGTTGACTTGTATTAGTCCTTTGTTCA ATTGCTTTTTCTCCCACCTTGCATCTTCCCCTGATTACCATCCTCATTCGTCCCGATGTAGCAGCTCTCTCTCCCCCACC TTGCATCTTCCCCTGATTACCATCCTCATTCGTCCCCCCTACTTCACCGAGACTCCGCTGTACCTATTGCTCCAGCTCAC TCTGCACCGATGTAGGAGGTTCGACGTCCCACCGGCCAGCTGTTGCCGTGCTGTTGCATCGAAGGCCGATCCGTAGGTAC CTTCAAGCCACCAAAACCAGCTGGAAGTTCTTCTTTACTGGTTGTTTGCCTACCCCCTATCTCCTCCATTTTCCTTTACA GCTTTGTTCTGATCTGAGTTGATTTGATGTACCCATATTTTTGCTTATAAATTGATCCCTTCTCTCCCCTGTCTTGAACT TTCAGATCCCTCTACCCAGAGTCCGTTTGTTTGGGGTCGGTAAGAGAGCAACATTGGTGTCAAGTTCTGGTGGAGATGCG GTTCAAGGTTTCTGCGATGGCTTCGGCTGGGGTTGATTTTGAGTTTGTTGGGTAAAAGAATCCAATTTCTGCATTTCCTT TCTTATTCCTAGCATTATCATGTTGCTGTATTTTTACTTACACATTAGCACCTTTGACTGCAGTATCTCTTATCTATTAC GGCTTACAGCACTATCTATCATTGGCTGGCTCACTTGTATTGATCCCATTAGTCATGGTACCGGTCATGGGTGGAACTGA TGTAAGCATATACTGTTATAGTGTTATGTACTGTTTACTCTTAAGAAAATTTAGTTTTTCATATTTGAATCTACATTTAC ACTAACCACTGATGGCAGACGGATACTGCTACTGTAATTCCTACAATGCTGCTCTGTTTTGACTTAAAACATGATGATGA GTATGATATTGTGTGTTGCTATGTATTTCAGGGAAGCCAAGAAGAAGTTGCAGACACAGAACAAGCTGAAAATTGGTTCT CTTTGGCTTCTGCACAACGAATATGTGGTGTGTATTCTATATAGTTTTAGTTTTATCAACTCATTTACCTCCTGTTGTGT GTCCATTATACTCCCTTCTTTTCCTGATTGTGATTGTGATTGAGATAAGATTGGTTGCTGTGTTACTAAGGGATATGTCT TTTAGACTTTATAAGAAATCAGCTCTTGAAGATATCATTAGTTGCTGTGTTACCAAGGGATATGTTTTTCAAATGGAGAT GATAGTACGAGCATCCAGAAAAGTCTTTCAAGTCATATGTTTAGTATGTTTGGGTTTACCTTCATTTATCATATCCTACT TCATGGCTGATTTGATTTGATAATATCTATATGTTTAGTATGTTTGAGTTTACTTATTTGTTTCAAAGTAGCTTATAATC AAAATCATATTGAGAAAGTTTTTGTCAAAACCAAGTGTTTATTATAATTATGCTGTTTACATTCAAAAGAAATAATATCA AAATAAACTTGATTTTCTGTTAGACTTATGGAGGGCTCTTAGGGTATTCTTTATCTGTGAATGTTAGACAGTTCAGCCAA TTCTTGGCTACCTTATTCAGTTGAGTTAATAGTGGCTTGGTCATTTACCAATTAATGGGGTTTATCATCCTTAGATTTCC TTACAACTATACATCTACCAAGTGCCATTATGCACTGTTTCAAGCAAAGATGCAAAATGCTAGAAGTGATTTTTTTAAGG ATGATAACACCTTACTTTCTATTTCTATTGCTTGAACTGTCAGGTATAATGTTGTCTTGACAGGTATAATGATGTGAATG AGGGTTTGTTCTGTGGGTTGGTCCTTATTGTTTGTTTTCACTTTTCATTTTAATAGTTTTGTTTTAGAATAAAATGCTGA ATAACTTACTCTTTGGCATTGTTTCTTTCCTTGGTTGTCAAATCTGCTGGTATTCAGTGCGCTAAACACAAGTTCAGATG ATCTTCCATTATGGGGTATGCCTATTAATGCCTCATTCATTCTGGAATACAAAATCACACAAGTTCAGATGCTATTGGAA AAGATACTTAAAAGAGTTTGAATTGCTTCCAAATGGCCCAGATGAAGGGGGTTGGGTTTTCACTCTTTGAATGGTAGTTC ATTACTTCATTATCAGACACAATCTTAATTCATCAGATACATCACTCTGAGGATCTTTTTAGGCGTATAAAATAACGTTG GGAATCTAAATATAAACTATCTGCATTTTGAAATACAATTATGTCAAAAACCAATGTTAGTAGTTGAAAACGTACATTAA CTGTTTACAGATCTCTGCTTTGACATTTTTTGCAACCAAATGTGGATTTGCTGTTCTCTGAACACATTAAACCTTGGCTC TTATTCTGTTAGGTTGGGTGTATTCTTAGTTTCCATATTAAATCCTTCTACTTTTAATCTAATAATAAGTTTGTGATGGT GATTTTGACCAAGCATGTGTATCTTTTACTGGGAATATACAGTTGTTGTTGCTAGAGGGGGAATGGAGACCCTCAGACCT GCTTGGCAGCGTGTGTATATGACCAGAGCTTCTGCATAAAGAGATTCTCTTAAAAGTTTTATAGAAGGGTACCAAGAGGG TGTTCAGCGAGTAATGGAGAAGAAAGAAGATTCCAAAACTCAAGGACATGTCAGTATACCAAAAAGAGTCAACTTGAACT TGCTTGTAGGAGGCAGTGTCATACCTTCCATTTAGACTCAAGCATGCAACTTTGCAAAAATTAGTGTCAATCCCCTAGAA TTAAAGGGTGTTAATGTACATTTCACTGAACAGATATAGTCGAATATTCCAAAATGGTGTACTTGGGCTACTAAGCATCT AATGGTAGTACTGAATTTTGTTTGTGCAATTCGTTTTTTACTTAGTTTTAAATCTTGTGTGCTTTTCAGTGATATTAGTG GTGTGTTTGTTCAGCA
CDS sequence (LotjaGi6g1v0363900.4) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTTGCCCAGGCTCCACAAAATTTCTGGATCCGCCACTGCCTACGACAACATCAACATGCATGGCATCACAAACACCAC TCTTGCATTGTTGAACTCGTGCAAAAACACCTCTGATATTTGTCAACTTCATGCTCGCATGGTTAAGACCGCTCTCACCA ACGTTCCTTTCACTCTCAGCAAGCTTCTCTATGCTTCCATTCTCGACATGGACTATGCAGCTTCCATTTTCAGCCACATT CAAACCCCCAATCTTTTCATGTTCAACACAATGCTCAGAGGCTATTCAATCAGTCATTACCCCAATAAAGCTTTGCCCAT TTTCAATCAACTCAGGAATCAGAGGAGTGAGCTTGACCGGTTCTCTTTCGTTGCGGTTCTCAAAGCATGTGGTCGAGGTT CTCATGTTAGTTTTGGCCAAGGGGTCCATGGGATTGCAGTGAGGTCTGGGAATGGGATGTTTGTTGATGTTAAGAATACC CTTTTGCGTTTTTATTGTGTTTGGAGAAGAATTGAAGATGCACATAAGCTGTTTGATGAGTTTCCTGAAGGAAATGACTT AGTCTCTTGGAACACTTTGATGGGTGGGTGTCTTGTTGTTTCTCAGCCTAATTTGGTTTTTGATTTGTTTAGGAAGATGT GTTGGAGTGGGCTTAGAGCTAGTGCTGCCACCGTCGTGATCCTTTTGCCAGCAGCCGGTGATAGAGGGGACTTTGTTGTT GGGAAGTCCCTCCATGGTTACTGTATCCAAATTGGACTTAGTTCTCATTTGAATGTTCTTACTGCATTGATAGATATGTA TGCGAAAATTGGTCGTGTGCATTGGGGGCGTAAGATTTTCGATGGTCTTGTTGAAAAGGATGTTGTCTTATGGAATTGTT TAATAGGAAATTATGCAAGGAATGGTTTGGTAGGAGAAGCGGTGTATTTATTACAGCAAATGAGAATTCAAGGAATGAAA ACTAATTCTTCTACCTTTGTGGGGCTGCTTTCAGCTTGCCCTGCATCCGAATCTATACATCTAGTTCGTCACGTTACTAG TTTTATTGAAGAGGAGAAACTACAACTGGATGCAGTTCTGGGAACAGCTCTTGTTGATATGTGTGCTAAATGTGGCTTTC TAGATGAGGCTATGGGCATATTTGAGAGGATGGAAGATAAAGATGTGAAATCTTGGACAGCCATGATTTCAGGTCATGGA GTTCATGGCCAGCCAACTAAGGCCATTAGGCTTTTCAATAGGATGGAGAACGAGGGGTTTAAACCAAATGGAGTCACCTT TTTGGCAATTCTGACTGCTTGTAGTCATGGAGGACTTGTAATTGAGGGGATGTATATTTTTAAGCACATGGTTCAGGAAT TTGGCTTTTCGCCACATATTGAGCATTATGGATGTCTTATTGATCTCTTGGGTCGAGCAGGGATGCTACATGAAGCATAT AAACTAATCAAGAGCTTGCCAATTAAGGGTGATGCTACTGCATGGCGTACACTGCTTTCTGCTTGCCGAGTCTATGGAGA TGTTAAATTGGCGGAGTATGTAAAAGATGTCATAAACAACATTTATGCAGCGCATCCTACAGATTCCCTCCTCATTTCTA GCACTTATGCAGCTGCTGGAAGAATCTCAGATCTTATACCAATGCAAGAAATAAAACAAACAAATGTTGTAGTAGAAAAT TATGGGTTACATGAAAAAAAGGGAGGAAGTACAGTAAAGGAAGCTGGACTCAGCTGGGTTGTAATTGATAATTAG
Protein sequence (LotjaGi6g1v0363900.4) extracted from Lotus japonicus Gifu v1.2 Proteins.
MLPRLHKISGSATAYDNINMHGITNTTLALLNSCKNTSDICQLHARMVKTALTNVPFTLSKLLYASILDMDYAASIFSHI QTPNLFMFNTMLRGYSISHYPNKALPIFNQLRNQRSELDRFSFVAVLKACGRGSHVSFGQGVHGIAVRSGNGMFVDVKNT LLRFYCVWRRIEDAHKLFDEFPEGNDLVSWNTLMGGCLVVSQPNLVFDLFRKMCWSGLRASAATVVILLPAAGDRGDFVV GKSLHGYCIQIGLSSHLNVLTALIDMYAKIGRVHWGRKIFDGLVEKDVVLWNCLIGNYARNGLVGEAVYLLQQMRIQGMK TNSSTFVGLLSACPASESIHLVRHVTSFIEEEKLQLDAVLGTALVDMCAKCGFLDEAMGIFERMEDKDVKSWTAMISGHG VHGQPTKAIRLFNRMENEGFKPNGVTFLAILTACSHGGLVIEGMYIFKHMVQEFGFSPHIEHYGCLIDLLGRAGMLHEAY KLIKSLPIKGDATAWRTLLSACRVYGDVKLAEYVKDVINNIYAAHPTDSLLISSTYAAAGRISDLIPMQEIKQTNVVVEN YGLHEKKGGSTVKEAGLSWVVIDN
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Gene3D | 6 | 148 | 143 | 3.2E-10 | ||
| PANTHER | 25 | 137 | 113 | 4.0E-94 | – | |
| ProSiteProfiles | 84 | 118 | 35 | 8.013 | ||
| ProSiteProfiles | 119 | 153 | 35 | 5.141 | ||
| PANTHER | 138 | 236 | 99 | 4.0E-94 | – | |
| Gene3D | 149 | 244 | 96 | 2.6E-11 | ||
| ProSiteProfiles | 154 | 184 | 31 | 5.919 | ||
| Pfam | 159 | 181 | 23 | 0.098 | ||
| TIGRFAM | 159 | 181 | 23 | 0.0021 | ||
| ProSiteProfiles | 186 | 220 | 35 | 8.89 | ||
| Pfam | 188 | 217 | 30 | 0.0044 | ||
| PANTHER | 224 | 337 | 114 | 4.0E-94 | – | |
| Gene3D | 245 | 355 | 111 | 5.6E-16 | ||
| ProSiteProfiles | 256 | 286 | 31 | 6.226 | ||
| Pfam | 286 | 333 | 48 | 7.1E-9 | ||
| ProSiteProfiles | 287 | 321 | 35 | 10.611 | ||
| TIGRFAM | 289 | 321 | 33 | 2.7E-6 | ||
| PANTHER | 351 | 543 | 193 | 4.0E-94 | – | |
| ProSiteProfiles | 357 | 387 | 31 | 8.966 | ||
| TIGRFAM | 362 | 390 | 29 | 0.0023 | ||
| Gene3D | 363 | 560 | 198 | 1.2E-36 | ||
| Pfam | 387 | 435 | 49 | 1.3E-10 | ||
| ProSiteProfiles | 388 | 422 | 35 | 12.233 | ||
| TIGRFAM | 391 | 423 | 33 | 2.0E-8 | ||
| ProSiteProfiles | 423 | 458 | 36 | 7.837 | ||
| ProSiteProfiles | 459 | 493 | 35 | 7.3 | ||
| Pfam | 462 | 486 | 25 | 0.013 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of LotjaGi6g1v0363900.4, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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