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LotjaGi6g1v0365100.1

Overview

Field Value
Gene ID LotjaGi6g1v0365100
Transcript ID LotjaGi6g1v0365100.1
Related isoforms 1
Lotus japonicus genome version Gifu v1.2
Description Telomeric repeat-binding factor 1; TAIR: AT1G15720.1 TRF-like 5; Swiss-Prot: sp|Q6WLH3|SMH5_MAIZE Single myb histone 5; TrEMBL-Plants: tr|A0A1J7H3F4|A0A1J7H3F4_LUPAN Uncharacterized protein; Found in the gene: LotjaGi6g1v0365100
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr6:67731846..67737426) extracted from Lotus japonicus Gifu genome v1.2.

TAAAAACGTGACAACAATTGGAATGGGGTAGTTTGTCTCTATGTTGTGTTTTGTTGACATCCCACAAGTTTAGCATTAAT TAATAAAAAAAGGAAAGTTTTGTGTAATTTTGCCGCTAAAAACTGTTTTGCGTTCTTCATCTCCACTACCCATCTCCATT TTCATCTCTACTCAGTGAAATCCTGTGCAGGTGTTGATTTGTTTGTTTCTCTCTCTTCTCATTGCAGATTTTTTTAGGGT TTTGAGATTTGAACGTCTTTTGTTTGCAGATCTGAGGGTTTTGATTGCGACTTGAAAAATGACCATTGTTCGGAAATGCG ATTCGGTTCAAATCCAGCAGAGGAGTTTGCTTTGATCGGTGCATTGGCGAGTTCAACTTCGCTGTTATAGACATACCGAA AGGTTTGTTTCGTGCCTTTCTCCTTCTTTTCTTCTGGTGGCTTTTCAGCTCCTCGTGTTTGCCGTGAATGAAGGAACAAC TTGGGTTTCGTTTCTTCAGCAAAGCATTGATGTTCTTGTTGTTTTCTGCTCCTCATTATATGCTAATAATTCATTTGTGC TTGATGTTGGGGTGAACGACCTTCATTTTGATGAAATTGAAAACTAAATGATTTGCATGTTGGCTTTTGATTCTTGGTAA AGTATATGAACGATTGTTTATGGAAAGCAAGCACAATTAATGGTTGCCTTTTGGAATGCCAAATACACTTAATTAGGAAA CTATACGTTCTTGGGATATATAGTATTCAGAAATAGGATTGCACAAACCGAATTGCATAGCTGAGGAAGACAACTTGGGG TTTTAATTTGATCTTTTGAGAAAATGAGCTACGTGCATGATTTAATTTCGTTGATTTTATATATGGGGGTCAACCATGCT TCACTTACAAACTCTGCTTTTGTCATCCGAACTCTTGGTAATTATCTTTATAAGTTACTGATACTTAATTTGAAGAAAGC TTTTGTGTATTAGCTGAAAAAGATTTTGTAACCATACTATTATTTCTTTTGTTCTTATCCAATGCTGATGCAGTTAGAAC TTACAAGTGGTTGGCACAATATTGGTTAGTCAATAAGGGCCCAGGGATCATACTATCTACTTGGGATTCTATTGTTCTTA CCTTCTATTGCTCTATGCTATGTAGGTGTTGATTTTAAGATCAAGCTGCTCACGGTCCGTGGAAAGAGGTTGAAACTAGT TCTATATGGACACTGGTAATCTATAGTTAAATGTCCCCCTTCCGTTTCATGAAATTAGATCTTTTTATTGCCTGGCCTGG AATCATGGGAATTGGATGCAAACAAATACAATGAAATGTTCCGTACATGCTCATTCTGTTGAATCACTTATCCATTGACC TAAGTGACTTATTGAAATTTGAATAGTATGTTGAGGACTAATAAAATTACATCTATTGCAGCTGCACAAGAAAGGCTTAG ATTTTAGAACGCTAACAAGTTCTTACTATAGAGGAGCACAGGGAATCATTCTTGGTATGCTAAAATGATTTTTGTTTTCT TTTTCTTTTTCTTTTTGTTCTAAGTTTGACTATGTAGTTTTTTTTTTCTTTTTGTTCTAAGTTTAACTATGTAGTTTCAC AGTCCCAATCAGTTTGGTATTTTTGGTTATTGGATTGGTTTGGACTATTGTGGTTTTGATTAGAAGAGATATGAAGCTTG ATGGAGTCTTGGGAAGAGGGTTTTTTCGTTATTTACATCAATTCTCTTCGTTCTTTTAGCAAGAGTTGGTGTTGATAACA TTTTTCCTGATTTCTGTCTTAATTTTGAACTTTTAATGTAGTTCTGATGTAATTTACTAAAGATGCATAAACTCTAAAGC TTATGATTTCTTCTCACTCTTGTTTGTCGATTTATTAGTCCAGCCACCTCTGATTGCACACTGATGTCGGTTGGGAAAAA AGTATAGTATTAATTATGCCGATTGCACCTATATACTAATACAGTAGTTAATTATTACTAGTGATCTTCTATATAGTGAT GTTTTTCTTTTTAACAGCTGTTCAATGAACAGTGTAATTGCAACTTTTCCTTTTCTGTGAACATACCATGTATACCCCTC TCGTACTGATCTTAGTGATGCTTTTCTTTTTAACTGCTGATGAATGAACAAGACTGCAACTTTTCCTTTACTATGAACAT ACTATGTATACCCCTCGTACCAATACCCATACCAAATACCGGAGCGTATGGCGGACCCGTTAACTATGGTTTGAAACTTA CTTGTGTTGTCGATTTATGGGATGGGAAATATAGTTAGGAAGTTAATACATTGATGGAACCATAGTTTTTATGATGGATT TTGCTTGGATGTAACACTCATATTTAGTTCTTGTGTGAATTCTCTATGCTACTCTTTTGTGCTTGATTATCAAGGGCAGT GTGGATAATCATTAATTTAGGAGTAATTTATGGTTTAACTATTCTATTTGGTACAGTGATTCTTAATCTCAACCTCTTGC TAAGGAGATTATGGATGGTGATGCCGGAAGTTGGGCGGTGGAATTCATAAGGGGGCGAATTCCAAACAGCACTATACTGA GAGTATTGGTTCGCACCCTCGCTGTTGCTCCGAAGATGGACTCATCGTACTTCAAGACTATGATCCTTGGGATGCTTCAA GAGTGTTGTTGGAGTGTCTCAATTGAGGAATACATGCTTGAAATTATGGAAATCCTCGAACGAAGTCTTGATCACGAGGG TTCTCCCATCAGCGCTGCCTTTCGTGCCGCATATTGTACGGTGGCCGTGGAATGTACTCTTAAGTACCTTGAGGTAGATC TCTCTAGTCCTAAATACATTGACGCTGTTCAGAGAATATGGTCAGGAAGGGTTAGGCAGATGAGACCCTCTTCTGGTGGT GAAAGCCAATGCCCTTTGTTCTCTGAGGAGTTGGAAAGGTGGATGACAGAGATTGAGGCATCCCTGATAGACACATGTAT CAGAGATCGGTTGGCAGCCTTAAAGAACACTAGAGTCGTGGCCATTCAAAAGCTCAAGATCTTTTTGGCAGAGTCCTGGG ATAACTTTGACCCTTCCTTTCTTGAGCAGCTGGCAGGGGAGAATGATGTTTTTCTCTCCAATGTTGCTAAAGGGTGGTGC TTGCCTCCACAGGGTCAGAAAGAGCAACAGAAAGGTCATTTCTTATTTAGACTTTCTTTTTTTGTGGTAAATTATTTTCC TTTTGTAAACACACAACTTACATTGTTAATTGTTATAAGCACTTTTAAACTAAAATGAAAATTTCCTTCATTTTGTATTC AATAGAAACTGCTAATGTTGGTGACCGTTCTCCAACAACTGCTGATGAGGTAACCATGTCTGTAACTTGTTATTCTGATG GTTGATTTTAAATTAGTATAATACTTATTGATTTCTTTTGCAGTGGAAGAAGTTTGTGAATCGCTCCTGCAGTGGGACAT CATATGGTACTCTGCTGCCTAGCCCTAAGATGAAGAAGGTTTCTCCTTTAAAGGAGTATGATGATTCCACAAATGTTATA AAAAAGAGAAGAATAACAAAAAGATGGAGTCAACTAGAAAAAGAGACTCTACTAGCTGGGGTAAACAAGTATGTGGCTGT TCTAACTAGTTCAACAGTAGTTTTGATTGGTAAGAGATTAAGTTTAACTAATGTTCAAACTAGTTCAACAAGTATGTGGT TGTTCTAGTTAGTTCAAGAAGCAGTAAACAAGTACTAATGTTCTAACTTGTCTGTTTAGTTTTGACTGATAAGAGAATAT GCTTAATTTCTTTGTTTCTTTATGTTATCTTGTTTCAGATTTGGTGAAGGTAACTGGACATTCATTTTAAGTACTCACAA GGATGTGTTTAAAGGGAGAACTTCCGTAAGCCTATGGTTATTTTTCTGTTTGTGGTGTATATGTTACTTTTTTTAAACTT GTGTGCATTTGATGTCAATCAAATGATTTTTTTCAGGTCGATTTAAAGGATAAATGGCGAAACATGAATCTGCATACAGG CATTTGAACGAGACTTTGCCATGACCCGCCCTAAGAAGAAGAAGGTAATGTTAATCATTTCAATTTACTTTTGATCGGCG AAAAATTTCAAAGGATGAACATTCCTGAGGTATATTTGTAGGAGTTATGATACATACACACCTCCACCCATTTTCCACCT TTATTTTCTATCTATTTATCTCTCCTTTATCAATCAAATCACATATTACATCTTTATTTTCTCTCTCCTTTCTTCCCATC TCTCTCTTCTTCCACCTCTCCACACCTCAAAAAAATGAGGTGTGAAGATATAATTATTGATATTTGTAGTTAGGTTCATT CATGGTATTTATTTTAGCCCAATTATATCAATCATATTGAATAAAGAATTTGAGTTGGCTTAGTGTGAAGTTGTTGCTCA GTTTTATTTATGCTACTATATTGAACTTTGATTTGTCAATTTCCTTAAAATGAATTGATATTATTTGGTTTCTTTCTCTT CCTGGTGAGTATTTAAATTTAATGGCACCAGCTGTTGGAATATTACTATTAGGGAATATCTTAACACAAGACGATGTTAG GGACTATGCTTTTATCAGTTATTGATATTAGAGTAAATATGCTAACTTTTTGAAAATATTCAACTTAGTACCTTTATTTA ATTTATCCAGCATCAGAGTAGGACAAGTTTGTGTCCAACTGTAGGTTAATCAAGGACTCTATTACTTCATTTGACTGATA ACTATTGACATATAAGTTGTGGTACTTCGTGGGTGGGGTGTGTCAAGTGACAATATTTTGAGTATAGAATTTTCTATGTT GTGAGTTTACACCCTCTTGTTTTTCGCTAAATGGTATGTAGTTATTATTCTCTGTGGCATATTTCTTCAGTAAATTATTA ATTATCACATACTCAATATTTTCATTGAAGCTGACAGCTATTCTTTTGTTTCTTTTTCAAGGGGTCTTGGTATCGAGCCA GATTGAGAAGGTAGATCTAATCCATTGTGGCTGGGGCAGATTAAGTGAAGTTTGAATTTGAGGACCTGTTATTTGTATTA CGTTTTAGTTTACTTACTATAAGCTGCAACAAGCACCTCATAAATAATGAATAGCATATAAACCAATTTCAAGTTTTCCA ACGGATCAATTCTATTGTTCCAAGGAAATAAAGCAACATAGTTATACGTAATCATTCCAACGGTTATAATCCTATACTTG GAATGAAATAATGGTAATCATAATTGGATTTAATTGATTTTATTATTATTTGATTTGCTGTTAACCATAATATTTGTCAA TGGCAGTTGGGTATGTTGAAATCAAGGTTGTAAAGATCGGGATCCTACTTAGGTTCGAGAGGGGGGTGAAAAATCATAGA TCGGAAGATTGGGATCGAACCATAAGATCCTATAAGAAATGAAAATATGTACTTAGTAAAATACACACATGTAGAAATTT ACACATGATGAAAATAATCTGATTCACATGAAATTAATTTTGAAATTTATGATATACTTCCTAATTTCGTCTGAGTACCT CTTCTCATCTTTCCTTGCGCCACCGTGTGGAGAGGCTAATTTCGTGTCTAAATTCCTCGTC
Download Genomic Sequence

CDS sequence (LotjaGi6g1v0365100.1) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGGATGGTGATGCCGGAAGTTGGGCGGTGGAATTCATAAGGGGGCGAATTCCAAACAGCACTATACTGAGAGTATTGGT TCGCACCCTCGCTGTTGCTCCGAAGATGGACTCATCGTACTTCAAGACTATGATCCTTGGGATGCTTCAAGAGTGTTGTT GGAGTGTCTCAATTGAGGAATACATGCTTGAAATTATGGAAATCCTCGAACGAAGTCTTGATCACGAGGGTTCTCCCATC AGCGCTGCCTTTCGTGCCGCATATTGTACGGTGGCCGTGGAATGTACTCTTAAGTACCTTGAGGTAGATCTCTCTAGTCC TAAATACATTGACGCTGTTCAGAGAATATGGTCAGGAAGGGTTAGGCAGATGAGACCCTCTTCTGGTGGTGAAAGCCAAT GCCCTTTGTTCTCTGAGGAGTTGGAAAGGTGGATGACAGAGATTGAGGCATCCCTGATAGACACATGTATCAGAGATCGG TTGGCAGCCTTAAAGAACACTAGAGTCGTGGCCATTCAAAAGCTCAAGATCTTTTTGGCAGAGTCCTGGGATAACTTTGA CCCTTCCTTTCTTGAGCAGCTGGCAGGGGAGAATGATGTTTTTCTCTCCAATGTTGCTAAAGGGTGGTGCTTGCCTCCAC AGGGTCAGAAAGAGCAACAGAAAGAAACTGCTAATGTTGGTGACCGTTCTCCAACAACTGCTGATGAGTGGAAGAAGTTT GTGAATCGCTCCTGCAGTGGGACATCATATGGTACTCTGCTGCCTAGCCCTAAGATGAAGAAGGTTTCTCCTTTAAAGGA GTATGATGATTCCACAAATGTTATAAAAAAGAGAAGAATAACAAAAAGATGGAGTCAACTAGAAAAAGAGACTCTACTAG CTGGGGTAAACAAATTTGGTGAAGGTAACTGGACATTCATTTTAAGTACTCACAAGGATGTGTTTAAAGGGAGAACTTCC GTCGATTTAAAGGATAAATGGCGAAACATGAATCTGCATACAGGCATTTGA
Download CDS Sequence

Protein sequence (LotjaGi6g1v0365100.1) extracted from Lotus japonicus Gifu v1.2 Proteins.

MDGDAGSWAVEFIRGRIPNSTILRVLVRTLAVAPKMDSSYFKTMILGMLQECCWSVSIEEYMLEIMEILERSLDHEGSPI SAAFRAAYCTVAVECTLKYLEVDLSSPKYIDAVQRIWSGRVRQMRPSSGGESQCPLFSEELERWMTEIEASLIDTCIRDR LAALKNTRVVAIQKLKIFLAESWDNFDPSFLEQLAGENDVFLSNVAKGWCLPPQGQKEQQKETANVGDRSPTTADEWKKF VNRSCSGTSYGTLLPSPKMKKVSPLKEYDDSTNVIKKRRITKRWSQLEKETLLAGVNKFGEGNWTFILSTHKDVFKGRTS VDLKDKWRNMNLHTGI
Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

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Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER
PTHR46993:SF6
1 196 196 1.2E-72 –
PANTHER
PTHR46993
1 196 196 1.2E-72 –
PANTHER
PTHR46993:SF6
236 331 96 1.2E-72 –
PANTHER
PTHR46993
236 331 96 1.2E-72 –
Gene3D
G3DSA:1.10.246.220
269 334 66 1.5E-16 –
ProSiteProfiles
PS51294
276 336 61 11.715
IPR017930
SUPERFAMILY
SSF46689
278 331 54 3.29E-14
IPR009057
SMART
SM00717
280 333 54 2.6E-4
IPR001005
Pfam
PF00249
281 330 50 1.1E-7
IPR001005
CDD
cd11660
282 331 50 1.77636E-18 –

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0003677
Molecular function DNA binding Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid).
Subterm of

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Expression data

Expression pattern

Expression pattern of LotjaGi6g1v0365100.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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