Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message

TREX

Transcript Explorer
for L. japonicus reference genomes

The Transcript Explorer tool can be used to search for candidate Lotus genes using user-defined keywords, or to comb a specific genomic interval—a combination of chromosome and position range—for genes/transcripts of interest.

Repeat Search

  • cd11660
Separate each keyword, or gene/transcript ID, with a comma or tab. Spaces are not accepted as delimiters due to their potential use in boolean searches.
or

Export options

Download the entire search result as a CSV file.

We have found 63 results. Now displaying 1 of 2 with 50 rows per page. This search has taken 0.031s to perform.

Transcript Name Description Chr Start End Strand Domain predictions GO predictions
Lj0g3v0116239.1
n.a. protein TRF-like 10 [Arabidopsis thaliana] gi|30680203|ref|NP_195998.2| chr0 51095696 51102635 +
1 domain prediction
 –
Lj0g3v0116239.2
n.a. Uncharacterized protein isoform 2 [Theobroma cacao] gi|508701719|gb|EOX93615.1| chr0 51095696 51102635 +
1 domain prediction
 –
Lj0g3v0256549.1
n.a. PREDICTED: armadillo repeat-containing kinesin-like protein 1-like isoform X3 [Cicer arietinum] gi|502131277|ref|XP_004500933.1| chr0 133179365 133186105 -
1 domain prediction
 –
Lj0g3v0256549.3
n.a. PREDICTED: armadillo repeat-containing kinesin-like protein 1-like isoform X3 [Cicer arietinum] gi|502131277|ref|XP_004500933.1| chr0 133179365 133186105 -
1 domain prediction
 –
Lj0g3v0256559.1
n.a. Os06g0181300 [Oryza sativa Japonica Group] gi|115466758|ref|NP_001056978.1| chr0 133190228 133195357 -
1 domain prediction
 –
Lj0g3v0271999.1
n.a. Myb-like HTH transcriptional regulator family protein [Theobroma cacao] gi|508701038|gb|EOX92934.1| chr0 140940943 140947376 +
1 domain prediction
 –
Lj0g3v0283089.1
n.a. PREDICTED: telomere repeat-binding protein 4-like [Glycine max] gi|356539862|ref|XP_003538412.1| chr0 146720460 146725827 +
1 domain prediction
 –
Lj0g3v0283089.2
n.a. PREDICTED: telomere repeat-binding protein 4-like [Glycine max] gi|356539862|ref|XP_003538412.1| chr0 146720460 146725827 +
1 domain prediction
 –
Lj0g3v0324039.1
n.a. PHD finger protein 21A [Medicago truncatula] gi|357445323|ref|XP_003592939.1| chr0 169321991 169325623 -
1 domain prediction
 –
Lj0g3v0324039.2
n.a. PHD finger protein 21A [Medicago truncatula] gi|357445323|ref|XP_003592939.1| chr0 169321991 169325623 -
1 domain prediction
 –
Lj0g3v0329879.1
n.a. PREDICTED: telomere repeat-binding protein 5-like [Glycine max] gi|356547261|ref|XP_003542034.1| chr0 172437085 172440220 -
1 domain prediction
 –
Lj1g3v1548920.1
n.a. PREDICTED: A-agglutinin anchorage subunit-like [Cicer arietinum] gi|502133104|ref|XP_004501652.1| chr1 18588288 18595471 -
1 domain prediction
 –
Lj1g3v2808080.1
n.a. Homeodomain-like [Medicago truncatula] gi|87162772|gb|ABD28567.1| chr1 31853166 31860172 -
1 domain prediction
 –
Lj1g3v3343860.1
n.a. Telomeric repeat-binding factor [Medicago truncatula] gi|357467497|ref|XP_003604033.1| chr1 38302579 38305375 +
1 domain prediction
 –
Lj1g3v3444280.1
n.a. PREDICTED: telomere repeat-binding protein 4-like [Glycine max] gi|356566517|ref|XP_003551477.1| chr1 39966902 39972403 +
1 domain prediction
 –
Lj2g3v1968560.1
n.a. n.a. chr2 28727895 28732300 -
1 domain prediction
 –
Lj2g3v1968560.2
n.a. PREDICTED: telomere repeat-binding factor 2-like isoform X1 [Cicer arietinum] gi|502160644|ref|XP_004511827.1| chr2 28727895 28732300 -
1 domain prediction
 –
Lj3g3v0323560.1
n.a. MYB transcription factor MYB107 [Glycine max] gi|351722098|ref|NP_001237744.1| chr3 2553361 2562596 -
1 domain prediction
 –
Lj3g3v2634550.1
n.a. Myb family transcription factor [Medicago truncatula] gi|357513929|ref|XP_003627253.1| chr3 32257630 32264782 -
1 domain prediction
 –
Lj3g3v3211100.1
n.a. PREDICTED: telomere repeat-binding protein 5-like [Glycine max] gi|356544580|ref|XP_003540727.1| chr3 39595512 39599739 +
1 domain prediction
 –
Lj4g3v0244050.1
n.a. Chromatin remodeling complex subunit [Theobroma cacao] gi|508704985|gb|EOX96881.1| chr4 2917943 2935630 -
1 domain prediction
 –
Lj4g3v0756940.1
n.a. PREDICTED: telomere repeat-binding factor 2-like [Cicer arietinum] gi|502152722|ref|XP_004509061.1| chr4 11810523 11819021 +
1 domain prediction
 –
Lj5g3v0659660.1
n.a. protein TRF-like 8 [Arabidopsis thaliana] gi|30687001|ref|NP_850275.1| chr5 9254626 9262216 +
1 domain prediction
 –
Lj5g3v0659660.2
n.a. protein TRF-like 8 [Arabidopsis thaliana] gi|30687001|ref|NP_850275.1| chr5 9254626 9262695 +
1 domain prediction
 –
Lj5g3v0659660.3
n.a. protein TRF-like 8 [Arabidopsis thaliana] gi|30687001|ref|NP_850275.1| chr5 9260071 9262695 +
1 domain prediction
 –
Lj5g3v1516750.1
n.a. PREDICTED: telomere repeat-binding factor 4-like isoform X1 [Cicer arietinum] gi|502081399|ref|XP_004486855.1| chr5 22107626 22111188 -
1 domain prediction
 –
Lj6g3v1618130.1
n.a. PREDICTED: telomere repeat-binding factor 1-like [Cicer arietinum] gi|502080243|ref|XP_004486503.1| chr6 18150958 18158030 -
1 domain prediction
 –
LotjaGi1g1v0345800.1
n.a. Myb family transcription factor family protein; TAIR: AT1G09710.1 Homeodomain-like superfamily protein; Swiss-Prot: sp|Q15554|TERF2_HUMAN Telomeric repeat-binding factor 2; TrEMBL-Plants: tr|A0A0B2PMP7|A0A0B2PMP7_GLYSO Uncharacterized protein; Found in the gene: LotjaGi1g1v0345800 LjG1.1_chr1 81241107 81248843 -
1 domain prediction
 –
LotjaGi1g1v0345800.2
n.a. Myb family transcription factor family protein; TAIR: AT1G09710.1 Homeodomain-like superfamily protein; Swiss-Prot: sp|Q15554|TERF2_HUMAN Telomeric repeat-binding factor 2; TrEMBL-Plants: tr|K7KJ58|K7KJ58_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0345800 LjG1.1_chr1 81241107 81248843 -
1 domain prediction
 –
LotjaGi1g1v0482700.1
n.a. chromatin remodeling factor; TAIR: AT5G44800.1 chromatin remodeling 4; Swiss-Prot: sp|F4KBP5|CHR4_ARATH Protein CHROMATIN REMODELING 4; TrEMBL-Plants: tr|Q2HV80|Q2HV80_MEDTR Homeodomain-like; Found in the gene: LotjaGi1g1v0482700 LjG1.1_chr1 99602581 99609961 -
1 domain prediction
 –
LotjaGi1g1v0482700.2
n.a. chromatin remodeling factor; TAIR: AT5G44800.1 chromatin remodeling 4; Swiss-Prot: sp|F4KBP5|CHR4_ARATH Protein CHROMATIN REMODELING 4; TrEMBL-Plants: tr|Q2HV80|Q2HV80_MEDTR Homeodomain-like; Found in the gene: LotjaGi1g1v0482700 LjG1.1_chr1 99602894 99609937 -
1 domain prediction
 –
LotjaGi1g1v0560200.1
n.a. Telomeric repeat-binding factor 1; TAIR: AT1G15720.1 TRF-like 5; Swiss-Prot: sp|Q6WLH3|SMH5_MAIZE Single myb histone 5; TrEMBL-Plants: tr|A0A1J7H3F4|A0A1J7H3F4_LUPAN Uncharacterized protein; Found in the gene: LotjaGi1g1v0560200 LjG1.1_chr1 109250696 109254928 +
1 domain prediction
 –
LotjaGi1g1v0576200.1
n.a. Telomere-binding family protein; TAIR: AT1G07540.1 TRF-like 2; Swiss-Prot: sp|Q6R0E3|TRP5_ARATH Telomere repeat-binding protein 5; TrEMBL-Plants: tr|I1MDE4|I1MDE4_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0576200 LjG1.1_chr1 111348680 111354657 +
1 domain prediction
 –
LotjaGi1g1v0579900.1
n.a. Telomere repeat-binding protein 5; TAIR: AT5G13820.1 telomeric DNA binding protein 1; Swiss-Prot: sp|Q9FFY9|TRP4_ARATH Telomere repeat-binding protein 4; TrEMBL-Plants: tr|K7MT46|K7MT46_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0579900 LjG1.1_chr1 111933230 111939191 +
1 domain prediction
 –
LotjaGi1g1v0579900.2
n.a. Telomere repeat-binding protein 5; TAIR: AT5G13820.1 telomeric DNA binding protein 1; Swiss-Prot: sp|Q9FFY9|TRP4_ARATH Telomere repeat-binding protein 4; TrEMBL-Plants: tr|K7MT46|K7MT46_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0579900 LjG1.1_chr1 111933413 111938872 +
1 domain prediction
 –
LotjaGi1g1v0579900.3
n.a. Telomere repeat-binding protein 5; TAIR: AT5G13820.1 telomeric DNA binding protein 1; Swiss-Prot: sp|Q9FFY9|TRP4_ARATH Telomere repeat-binding protein 4; TrEMBL-Plants: tr|K7MT46|K7MT46_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0579900 LjG1.1_chr1 111933460 111938872 +
1 domain prediction
 –
LotjaGi2g1v0374400.1
n.a. Telomere-binding family protein; TAIR: AT3G46590.1 TRF-like 1; Swiss-Prot: sp|Q9SNB9|TRP2_ARATH Telomere repeat-binding protein 2; TrEMBL-Plants: tr|K7LPN4|K7LPN4_SOYBN Uncharacterized protein; Found in the gene: LotjaGi2g1v0374400 LjG1.1_chr2 87116211 87120946 +
1 domain prediction
 –
LotjaGi2g1v0410300.1
n.a. MYB transcription factor; TAIR: AT5G67580.1 Homeodomain-like/winged-helix DNA-binding family protein; Swiss-Prot: sp|Q9FJW5|TRB2_ARATH Telomere repeat-binding factor 2; TrEMBL-Plants: tr|V7CHF9|V7CHF9_PHAVU Uncharacterized protein; Found in the gene: LotjaGi2g1v0410300 LjG1.1_chr2 90714484 90719715 -
1 domain prediction
 –
LotjaGi2g1v0410300.2
n.a. MYB transcription factor; TAIR: AT5G67580.1 Homeodomain-like/winged-helix DNA-binding family protein; Swiss-Prot: sp|Q9FJW5|TRB2_ARATH Telomere repeat-binding factor 2; TrEMBL-Plants: tr|V7CHF9|V7CHF9_PHAVU Uncharacterized protein; Found in the gene: LotjaGi2g1v0410300 LjG1.1_chr2 90714664 90719315 -
1 domain prediction
 –
LotjaGi3g1v0028200.1
n.a. Telomere repeat-binding factor 4; TAIR: AT1G72740.2 Homeodomain-like/winged-helix DNA-binding family protein; Swiss-Prot: sp|Q6WLH4|SMH3_MAIZE Single myb histone 3; TrEMBL-Plants: tr|I1KG92|I1KG92_SOYBN Uncharacterized protein; Found in the gene: LotjaGi3g1v0028200 LjG1.1_chr3 3072170 3082477 -
1 domain prediction
 –
LotjaGi3g1v0416100.1
n.a. Telomere repeat-binding factor like-protein; TAIR: AT1G72650.2 TRF-like 6; Swiss-Prot: sp|Q9LL45|TBP1_ORYSJ Telomere-binding protein 1; TrEMBL-Plants: tr|G7L6S3|G7L6S3_MEDTR Myb transcription factor; Found in the gene: LotjaGi3g1v0416100 LjG1.1_chr3 82183996 82192207 -
1 domain prediction
 –
LotjaGi3g1v0416100.2
n.a. Telomere repeat-binding factor like-protein; TAIR: AT1G72650.1 TRF-like 6; Swiss-Prot: sp|Q9LL45|TBP1_ORYSJ Telomere-binding protein 1; TrEMBL-Plants: tr|G7L6S3|G7L6S3_MEDTR Myb transcription factor; Found in the gene: LotjaGi3g1v0416100 LjG1.1_chr3 82183996 82192207 -
1 domain prediction
 –
LotjaGi3g1v0416100.3
n.a. Telomere repeat-binding factor like-protein; TAIR: AT1G72650.1 TRF-like 6; Swiss-Prot: sp|Q9LL45|TBP1_ORYSJ Telomere-binding protein 1; TrEMBL-Plants: tr|G7L6S3|G7L6S3_MEDTR Myb transcription factor; Found in the gene: LotjaGi3g1v0416100 LjG1.1_chr3 82183996 82192207 -
1 domain prediction
 –
LotjaGi4g1v0022000.1
n.a. Chromodomain-helicase-DNA-binding family protein; TAIR: AT5G44800.1 chromatin remodeling 4; Swiss-Prot: sp|F4KBP5|CHR4_ARATH Protein CHROMATIN REMODELING 4; TrEMBL-Plants: tr|K7KPZ4|K7KPZ4_SOYBN Uncharacterized protein; Found in the gene: LotjaGi4g1v0022000 LjG1.1_chr4 2675963 2693714 -
1 domain prediction
 –
LotjaGi4g1v0094200.1
n.a. MYB transcription factor; TAIR: AT1G49950.1 telomere repeat binding factor 1; Swiss-Prot: sp|Q8VWK4|TRB1_ARATH Telomere repeat-binding factor 1; TrEMBL-Plants: tr|K7KPH5|K7KPH5_SOYBN Uncharacterized protein; Found in the gene: LotjaGi4g1v0094200 LjG1.1_chr4 12653479 12667288 +
1 domain prediction
 –
LotjaGi5g1v0080600.1
n.a. Telomere repeat-binding protein 4; TAIR: AT2G37025.1 TRF-like 8; Swiss-Prot: sp|Q9FFY9|TRP4_ARATH Telomere repeat-binding protein 4; TrEMBL-Plants: tr|A0A151TIW1|A0A151TIW1_CAJCA Telomere-binding protein 1; Found in the gene: LotjaGi5g1v0080600 LjG1.1_chr5 13078037 13086878 -
1 domain prediction
 –
LotjaGi5g1v0148700_LC.1
n.a. PHD-finger protein; TAIR: AT1G14770.1 RING/FYVE/PHD zinc finger superfamily protein; Swiss-Prot: sp|F4I7L1|TRB4_ARATH Telomere repeat-binding factor 4; TrEMBL-Plants: tr|V7BIA4|V7BIA4_PHAVU Uncharacterized protein; Found in the gene: LotjaGi5g1v0148700_LC LjG1.1_chr5 38461926 38467276 +
1 domain prediction
 –
LotjaGi5g1v0148700_LC.2
n.a. PHD-finger protein; TAIR: AT5G03780.1 TRF-like 10; Swiss-Prot: sp|F4I7L1|TRB4_ARATH Telomere repeat-binding factor 4; TrEMBL-Plants: tr|V7BIA4|V7BIA4_PHAVU Uncharacterized protein; Found in the gene: LotjaGi5g1v0148700_LC LjG1.1_chr5 38461926 38467276 +
1 domain prediction
 –
LotjaGi5g1v0148700_LC.4
n.a. PHD-finger protein; TAIR: AT5G03780.1 TRF-like 10; Swiss-Prot: sp|F4I7L1|TRB4_ARATH Telomere repeat-binding factor 4; TrEMBL-Plants: tr|V7BIA4|V7BIA4_PHAVU Uncharacterized protein; Found in the gene: LotjaGi5g1v0148700_LC LjG1.1_chr5 38461994 38467215 +
1 domain prediction
 –
LotjaGi5g1v0148700_LC.5
n.a. PHD-finger protein; TAIR: AT1G14770.1 RING/FYVE/PHD zinc finger superfamily protein; Swiss-Prot: sp|F4I7L1|TRB4_ARATH Telomere repeat-binding factor 4; TrEMBL-Plants: tr|V7BIA4|V7BIA4_PHAVU Uncharacterized protein; Found in the gene: LotjaGi5g1v0148700_LC LjG1.1_chr5 38462018 38467065 +
1 domain prediction
 –