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TREX

Transcript Explorer
for L. japonicus reference genomes

The Transcript Explorer tool can be used to search for candidate Lotus genes using user-defined keywords, or to comb a specific genomic interval—a combination of chromosome and position range—for genes/transcripts of interest.

Repeat Search

  • IPR017930
Separate each keyword, or gene/transcript ID, with a comma or tab. Spaces are not accepted as delimiters due to their potential use in boolean searches.
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Download the entire search result as a CSV file.

We have found 522 results. Now displaying 1 of 11 with 50 rows per page. This search has taken 5.948s to perform.

Transcript Name Description Chr Start End Strand Domain predictions GO predictions
Lj0g3v0020039.1
n.a. Myb domain protein 5 isoform 1 [Theobroma cacao] gi|508717011|gb|EOY08908.1| chr0 7982153 7983626 +
2 domain predictions
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Lj0g3v0068589.1
n.a. Transcription factor [Medicago truncatula] gi|357453385|ref|XP_003596969.1| chr0 24584195 24586538 +
2 domain predictions
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Lj0g3v0080089.1
n.a. PREDICTED: transcription factor GAMYB-like [Glycine max] gi|356550909|ref|XP_003543825.1| chr0 31010352 31016791 -
2 domain predictions
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Lj0g3v0082879.1
n.a. PREDICTED: myb-related protein Myb4-like [Glycine max] gi|356533659|ref|XP_003535378.1| chr0 32643233 32644558 +
2 domain predictions
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Lj0g3v0082899.2
n.a. PREDICTED: cell division cycle 5-like protein-like [Glycine max] gi|356535202|ref|XP_003536137.1| chr0 32645944 32652191 +
2 domain predictions
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Lj0g3v0085519.1
n.a. PREDICTED: myb-like protein Q-like [Cicer arietinum] gi|502096160|ref|XP_004490644.1| chr0 34236187 34237669 +
2 domain predictions
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Lj0g3v0089699.1
n.a. MYB transcription factor MYB109 [Glycine max] gi|351727817|ref|NP_001235894.1| chr0 36855445 36857239 -
2 domain predictions
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Lj0g3v0091669.1
n.a. PREDICTED: transcription factor MYB113-like [Glycine max] gi|356520958|ref|XP_003529126.1| chr0 37989245 37990707 +
2 domain predictions
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Lj0g3v0094629.1
n.a. tannin-related R2R3 MYB transcription factor, partial [Medicago truncatula] gi|387135354|gb|AFJ53058.1| chr0 39783254 39785228 -
2 domain predictions
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Lj0g3v0096579.1
n.a. PREDICTED: protein ODORANT1-like [Cicer arietinum] gi|502117524|ref|XP_004495851.1| chr0 40747877 40749905 -
2 domain predictions
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Lj0g3v0104249.1
n.a. PREDICTED: transcription factor MYB113-like [Glycine max] gi|356520958|ref|XP_003529126.1| chr0 44570927 44571400 +
2 domain predictions
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Lj0g3v0107919.1
n.a. PREDICTED: transcription factor MYB48-like [Cicer arietinum] gi|502082003|ref|XP_004487036.1| chr0 46569730 46570150 +
2 domain predictions
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Lj0g3v0107919.2
n.a. Myb-like transcription factor [Medicago truncatula] gi|357454091|ref|XP_003597326.1| chr0 46569733 46570150 +
2 domain predictions
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Lj0g3v0107919.3
n.a. MYB transcription factor MYB139 [Glycine max] gi|351722983|ref|NP_001235983.1| chr0 46569793 46570150 +
2 domain predictions
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Lj0g3v0109229.1
n.a. MYB-type transcription factor [Lotus japonicus] gi|283132363|dbj|BAI63587.1| chr0 47252336 47254764 -
2 domain predictions
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Lj0g3v0115219.1
n.a. PREDICTED: transcriptional activator Myb-like [Glycine max] gi|356570355|ref|XP_003553355.1| chr0 50644913 50646550 +
2 domain predictions
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Lj0g3v0117159.1
n.a. PREDICTED: cyclin-D-binding Myb-like transcription factor 1-like [Glycine max] gi|356548105|ref|XP_003542444.1| chr0 51629699 51632511 +
2 domain predictions
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Lj0g3v0117159.2
n.a. PREDICTED: cyclin-D-binding Myb-like transcription factor 1-like [Glycine max] gi|356548105|ref|XP_003542444.1| chr0 51629699 51632511 +
2 domain predictions
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Lj0g3v0117159.3
n.a. PREDICTED: cyclin-D-binding Myb-like transcription factor 1-like [Glycine max] gi|356548105|ref|XP_003542444.1| chr0 51629699 51632511 +
2 domain predictions
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Lj0g3v0129219.1
n.a. Two-component response regulator ARR1 [Medicago truncatula] gi|357483025|ref|XP_003611799.1| chr0 58467263 58469482 -
2 domain predictions
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Lj0g3v0129839.1
n.a. PREDICTED: transcription factor MYB86-like [Glycine max] gi|356573440|ref|XP_003554868.1| chr0 58798995 58800821 +
2 domain predictions
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Lj0g3v0147679.1
n.a. MYB transcription factor MYB181 [Glycine max] gi|351726530|ref|NP_001235850.1| chr0 68290112 68293929 +
2 domain predictions
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Lj0g3v0165349.1
n.a. PREDICTED: myb-related protein 315-like [Glycine max] gi|356573735|ref|XP_003555012.1| chr0 78489100 78491024 +
2 domain predictions
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Lj0g3v0165839.1
n.a. MYB29 protein [Glycine max] gi|359807202|ref|NP_001241360.1| chr0 78743420 78747154 -
2 domain predictions
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Lj0g3v0195029.1
n.a. PREDICTED: transcription factor WER-like [Vitis vinifera] gi|359491528|ref|XP_002279128.2| chr0 95118466 95119774 -
2 domain predictions
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Lj0g3v0195189.1
n.a. R2R3-MYB transcription factor [Lupinus albus] gi|318611380|dbj|BAJ61453.1| chr0 95228443 95229316 +
2 domain predictions
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Lj0g3v0205019.1
n.a. Homeodomain-like superfamily protein isoform 2, partial [Theobroma cacao] gi|508701203|gb|EOX93099.1| chr0 101912082 101918064 -
2 domain predictions
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Lj0g3v0212129.1
n.a. MYB transcription factor MYB57 [Glycine max] gi|351721486|ref|NP_001235675.1| chr0 106991900 106994399 -
2 domain predictions
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Lj0g3v0214919.1
n.a. PREDICTED: transcriptional activator Myb-like [Cicer arietinum] gi|502137380|ref|XP_004503065.1| chr0 108898180 108899030 +
2 domain predictions
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Lj0g3v0221649.1
n.a. PREDICTED: transcription factor DIVARICATA-like isoform X1 [Cicer arietinum] gi|502164758|ref|XP_004513249.1| chr0 113870294 113879963 -
2 domain predictions
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Lj0g3v0221649.2
n.a. PREDICTED: transcription factor DIVARICATA-like isoform X1 [Cicer arietinum] gi|502164758|ref|XP_004513249.1| chr0 113872175 113879963 -
2 domain predictions
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Lj0g3v0223589.1
n.a. PREDICTED: protein PHR1-LIKE 1-like isoform X1 [Cicer arietinum] gi|502116761|ref|XP_004495581.1| chr0 115330339 115334204 -
2 domain predictions
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Lj0g3v0223589.2
n.a. PREDICTED: protein PHR1-LIKE 1-like isoform X1 [Cicer arietinum] gi|502116761|ref|XP_004495581.1| chr0 115330339 115334204 -
2 domain predictions
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Lj0g3v0232579.1
n.a. PREDICTED: protein ODORANT1-like [Glycine max] gi|356528637|ref|XP_003532906.1| chr0 120720420 120721964 +
2 domain predictions
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Lj0g3v0236339.1
n.a. PREDICTED: transcription factor RAX3-like isoform X2 [Cicer arietinum] gi|502125463|ref|XP_004498936.1| chr0 122476749 122478454 +
2 domain predictions
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Lj0g3v0236669.1
n.a. Myb-like protein A [Medicago truncatula] gi|357474921|ref|XP_003607746.1| chr0 122654362 122657235 +
2 domain predictions
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Lj0g3v0246909.1
n.a. Myb-like protein AA [Medicago truncatula] gi|357487099|ref|XP_003613837.1| chr0 127962770 127965247 -
2 domain predictions
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Lj0g3v0251039.1
n.a. Myb-like HTH transcriptional regulator family protein [Theobroma cacao] gi|508781804|gb|EOY29060.1| chr0 130163620 130168326 +
2 domain predictions
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Lj0g3v0256549.1
n.a. PREDICTED: armadillo repeat-containing kinesin-like protein 1-like isoform X3 [Cicer arietinum] gi|502131277|ref|XP_004500933.1| chr0 133179365 133186105 -
2 domain predictions
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Lj0g3v0256549.3
n.a. PREDICTED: armadillo repeat-containing kinesin-like protein 1-like isoform X3 [Cicer arietinum] gi|502131277|ref|XP_004500933.1| chr0 133179365 133186105 -
2 domain predictions
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Lj0g3v0256559.1
n.a. Os06g0181300 [Oryza sativa Japonica Group] gi|115466758|ref|NP_001056978.1| chr0 133190228 133195357 -
2 domain predictions
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Lj0g3v0260369.1
n.a. Myb-like DNA-binding protein BAS1 [Medicago truncatula] gi|358347472|ref|XP_003637780.1| chr0 135252428 135261507 -
2 domain predictions
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Lj0g3v0260369.2
n.a. Myb-like DNA-binding protein BAS1 [Medicago truncatula] gi|358347472|ref|XP_003637780.1| chr0 135252428 135261507 -
2 domain predictions
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Lj0g3v0271999.1
n.a. Myb-like HTH transcriptional regulator family protein [Theobroma cacao] gi|508701038|gb|EOX92934.1| chr0 140940943 140947376 +
2 domain predictions
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Lj0g3v0276369.1
n.a. PREDICTED: transcription factor MYB46-like [Glycine max] gi|356542046|ref|XP_003539482.1| chr0 143410257 143413481 -
2 domain predictions
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Lj0g3v0281479.1
n.a. PREDICTED: transcription factor MYB21-like [Glycine max] gi|356534359|ref|XP_003535723.1| chr0 145912294 145912662 +
2 domain predictions
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Lj0g3v0283089.1
n.a. PREDICTED: telomere repeat-binding protein 4-like [Glycine max] gi|356539862|ref|XP_003538412.1| chr0 146720460 146725827 +
2 domain predictions
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Lj0g3v0283089.2
n.a. PREDICTED: telomere repeat-binding protein 4-like [Glycine max] gi|356539862|ref|XP_003538412.1| chr0 146720460 146725827 +
2 domain predictions
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Lj0g3v0298849.1
n.a. PREDICTED: transcription factor MYB104 [Vitis vinifera] gi|225449244|ref|XP_002276341.1| chr0 155317260 155321142 +
2 domain predictions
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Lj0g3v0300449.1
n.a. R2R3MYB transcription factor, partial [Lotus japonicus] gi|388330296|gb|AFK29426.1| chr0 156113367 156114867 -
2 domain predictions
 –