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TREX

Transcript Explorer
for L. japonicus reference genomes

The Transcript Explorer tool can be used to search for candidate Lotus genes using user-defined keywords, or to comb a specific genomic interval—a combination of chromosome and position range—for genes/transcripts of interest.

Repeat Search

  • IPR011009
Separate each keyword, or gene/transcript ID, with a comma or tab. Spaces are not accepted as delimiters due to their potential use in boolean searches.
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Download the entire search result as a CSV file.

We have found 3629 results. Now displaying 8 of 73 with 50 rows per page. This search has taken 5.887s to perform.

Transcript Name Description Chr Start End Strand Domain predictions GO predictions
Lj0g3v0304899.1
n.a. Ser/Thr protein kinase [Lotus japonicus] gi|62867357|dbj|BAD95981.1| chr0 158840582 158843744 -
2 domain predictions
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Lj0g3v0304959.1
n.a. PREDICTED: cysteine-rich receptor-like protein kinase 25-like [Glycine max] gi|356559907|ref|XP_003548237.1| chr0 158883519 158887347 -
2 domain predictions
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Lj0g3v0305359.1
n.a. PREDICTED: leucine-rich repeat receptor-like serine/threonine/tyrosine-protein kinase SOBIR1-like [Glycine max] gi|356508750|ref|XP_003523117.1| chr0 159165017 159167509 +
2 domain predictions
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Lj0g3v0305509.1
n.a. Receptor protein kinase-like protein, partial [Medicago truncatula] gi|358347041|ref|XP_003637571.1| chr0 159237699 159238469 +
2 domain predictions
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Lj0g3v0305959.1
n.a. LRR receptor-like serine/threonine-protein kinase FEI [Medicago truncatula] gi|357458059|ref|XP_003599310.1| chr0 159537663 159539453 -
2 domain predictions
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Lj0g3v0306109.1
n.a. Receptor-like protein kinase [Medicago truncatula] gi|357439017|ref|XP_003589785.1| chr0 159627112 159629719 -
2 domain predictions
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Lj0g3v0306269.1
n.a. PREDICTED: U-box domain-containing protein 35-like [Glycine max] gi|356522380|ref|XP_003529824.1| chr0 159774491 159775286 -
2 domain predictions
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Lj0g3v0307069.1
n.a. PREDICTED: proline-rich receptor-like protein kinase PERK8-like [Glycine max] gi|356524022|ref|XP_003530632.1| chr0 160290484 160294696 +
2 domain predictions
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Lj0g3v0307909.1
n.a. Serine/threonine protein kinase [Medicago truncatula] gi|357461629|ref|XP_003601096.1| chr0 160743283 160747628 +
2 domain predictions
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Lj0g3v0307909.2
n.a. Serine/threonine protein kinase [Medicago truncatula] gi|357461629|ref|XP_003601096.1| chr0 160743283 160747628 +
2 domain predictions
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Lj0g3v0308309.1
n.a. PREDICTED: probable inactive receptor kinase At4g23740-like [Glycine max] gi|356551470|ref|XP_003544098.1| chr0 160978563 160981283 -
2 domain predictions
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Lj0g3v0308989.1
n.a. PREDICTED: inactive protein kinase SELMODRAFT_444075-like [Glycine max] gi|356522578|ref|XP_003529923.1| chr0 161370384 161371992 -
2 domain predictions
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Lj0g3v0308999.1
n.a. PREDICTED: tyrosine-protein kinase Lck-like [Glycine max] gi|356526029|ref|XP_003531622.1| chr0 161371987 161375877 -
2 domain predictions
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Lj0g3v0309109.1
n.a. Serine/threonine protein kinase [Medicago truncatula] gi|357452493|ref|XP_003596523.1| chr0 161457127 161460340 +
2 domain predictions
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Lj0g3v0309109.2
n.a. Serine/threonine protein kinase [Medicago truncatula] gi|357452493|ref|XP_003596523.1| chr0 161458536 161460340 +
2 domain predictions
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Lj0g3v0310539.1
n.a. PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At2g24230-like [Glycine max] gi|356510976|ref|XP_003524208.1| chr0 162205293 162208324 -
2 domain predictions
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Lj0g3v0310929.1
n.a. n.a. chr0 162403467 162406443 +
2 domain predictions
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Lj0g3v0310949.1
n.a. PREDICTED: L-type lectin-domain containing receptor kinase S.4-like [Glycine max] gi|356496074|ref|XP_003516895.1| chr0 162403467 162406700 -
2 domain predictions
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Lj0g3v0312539.1
n.a. PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At1g67720-like [Cicer arietinum] gi|502135453|ref|XP_004502339.1| chr0 163172056 163178144 +
2 domain predictions
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Lj0g3v0312569.1
n.a. mitogen-activated protein kinase kinase kinase 2-like [Glycine max] gi|359806525|ref|NP_001241003.1| chr0 163211748 163213400 -
2 domain predictions
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Lj0g3v0312619.1
n.a. OSIGBa0112G01.2 [Oryza sativa Indica Group] gi|116308825|emb|CAH65964.1| chr0 163232361 163232828 +
2 domain predictions
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Lj0g3v0312629.1
n.a. Wall-associated receptor kinase-like protein [Medicago truncatula] gi|357497863|ref|XP_003619220.1| chr0 163237750 163238085 +
2 domain predictions
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Lj0g3v0313469.1
n.a. PREDICTED: LRR receptor-like serine/threonine-protein kinase RCH1-like [Glycine max] gi|356566445|ref|XP_003551442.1| chr0 163689060 163694316 -
2 domain predictions
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Lj0g3v0314389.1
n.a. PREDICTED: wall-associated receptor kinase 5-like [Glycine max] gi|356551203|ref|XP_003543967.1| chr0 164071491 164104945 +
2 domain predictions
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Lj0g3v0314409.1
n.a. PREDICTED: wall-associated receptor kinase 5-like [Glycine max] gi|356551203|ref|XP_003543967.1| chr0 164105991 164111246 +
2 domain predictions
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Lj0g3v0314509.1
n.a. PREDICTED: probable receptor-like protein kinase At1g67000-like [Glycine max] gi|356574206|ref|XP_003555242.1| chr0 164154056 164154894 +
2 domain predictions
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Lj0g3v0316319.1
n.a. PREDICTED: probable serine/threonine-protein kinase RLCKVII-like [Glycine max] gi|356557471|ref|XP_003547039.1| chr0 165174997 165178501 +
2 domain predictions
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Lj0g3v0316319.2
n.a. PREDICTED: probable serine/threonine-protein kinase RLCKVII-like [Glycine max] gi|356542581|ref|XP_003539745.1| chr0 165176682 165178501 +
2 domain predictions
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Lj0g3v0316449.1
n.a. MAP kinase [Gossypium raimondii] gi|183584854|gb|ACC63895.1| chr0 165252764 165258884 +
2 domain predictions
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Lj0g3v0316449.2
n.a. PREDICTED: mitogen-activated protein kinase 19-like [Cicer arietinum] gi|502166793|ref|XP_004513982.1| chr0 165252764 165258884 +
2 domain predictions
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Lj0g3v0318359.1
n.a. Kinase superfamily protein isoform 1 [Theobroma cacao] gi|508712563|gb|EOY04460.1| chr0 166272986 166276961 +
2 domain predictions
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Lj0g3v0318359.2
n.a. Kinase superfamily protein isoform 1 [Theobroma cacao] gi|508712563|gb|EOY04460.1| chr0 166272986 166276961 +
2 domain predictions
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Lj0g3v0319389.1
n.a. n.a. chr0 166742743 166743490 +
2 domain predictions
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Lj0g3v0319399.1
n.a. PREDICTED: mitogen-activated protein kinase kinase kinase A-like [Cucumis sativus] gi|449529503|ref|XP_004171739.1| chr0 166743655 166744282 -
2 domain predictions
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Lj0g3v0320009.1
n.a. PREDICTED: probable serine/threonine-protein kinase At1g54610-like [Glycine max] gi|356542955|ref|XP_003539929.1| chr0 167023890 167028975 +
2 domain predictions
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Lj0g3v0320039.1
n.a. PREDICTED: probable receptor-like protein kinase At5g20050-like [Glycine max] gi|356563053|ref|XP_003549780.1| chr0 167037803 167040069 -
2 domain predictions
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Lj0g3v0320669.1
n.a. PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase At4g27290-like [Glycine max] gi|356514935|ref|XP_003526157.1| chr0 167352280 167353569 +
2 domain predictions
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Lj0g3v0321199.1
n.a. PREDICTED: serine/threonine-protein kinase CBK1-like [Glycine max] gi|356545884|ref|XP_003541363.1| chr0 167681109 167690336 +
2 domain predictions
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Lj0g3v0321199.2
n.a. PREDICTED: serine/threonine-protein kinase 38-like isoform X1 [Cicer arietinum] gi|502114909|ref|XP_004495079.1| chr0 167681360 167686146 +
2 domain predictions
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Lj0g3v0321299.1
n.a. PREDICTED: mitogen-activated protein kinase kinase kinase ANP1-like [Glycine max] gi|356560123|ref|XP_003548345.1| chr0 167745111 167746810 -
2 domain predictions
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Lj0g3v0321389.1
n.a. PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase At2g19130-like [Cicer arietinum] gi|502083045|ref|XP_004487351.1| chr0 167813554 167814424 +
2 domain predictions
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Lj0g3v0321399.1
n.a. PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase At2g19130-like [Glycine max] gi|356543766|ref|XP_003540331.1| chr0 167814386 167814616 +
2 domain predictions
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Lj0g3v0321409.1
n.a. PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase At2g19130-like [Glycine max] gi|356517594|ref|XP_003527472.1| chr0 167814610 167815371 +
2 domain predictions
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Lj0g3v0321429.1
n.a. PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase At2g19130-like [Cicer arietinum] gi|502083045|ref|XP_004487351.1| chr0 167819044 167822055 +
2 domain predictions
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Lj0g3v0321459.1
n.a. Cysteine-rich receptor-like protein kinase [Medicago truncatula] gi|357490335|ref|XP_003615455.1| chr0 167846404 167849163 -
2 domain predictions
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Lj0g3v0321749.1
n.a. PREDICTED: casein kinase I isoform delta-like isoform 2 [Glycine max] gi|356548073|ref|XP_003542428.1| chr0 167964768 167972994 +
2 domain predictions
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Lj0g3v0322119.1
n.a. PREDICTED: probable receptor-like protein kinase At5g39030-like isoform X2 [Cicer arietinum] gi|502123882|ref|XP_004498297.1| chr0 168140019 168144620 +
2 domain predictions
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Lj0g3v0322429.1
n.a. LRR receptor-like serine/threonine-protein kinase HSL2 [Medicago truncatula] gi|357458063|ref|XP_003599312.1| chr0 168406859 168409546 +
2 domain predictions
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Lj0g3v0322829.1
n.a. MAP kinase PsMAPK2 [Pisum sativum] gi|8132347|gb|AAF73257.1|AF154329_1 chr0 168593464 168596583 -
2 domain predictions
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Lj0g3v0322849.1
n.a. PREDICTED: phototropin-1-like [Glycine max] gi|356550222|ref|XP_003543487.1| chr0 168601536 168609765 +
2 domain predictions
 –