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TREX

Transcript Explorer
for L. japonicus reference genomes

The Transcript Explorer tool can be used to search for candidate Lotus genes using user-defined keywords, or to comb a specific genomic interval—a combination of chromosome and position range—for genes/transcripts of interest.

Repeat Search

  • IPR011009
Separate each keyword, or gene/transcript ID, with a comma or tab. Spaces are not accepted as delimiters due to their potential use in boolean searches.
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Download the entire search result as a CSV file.

We have found 3629 results. Now displaying 12 of 73 with 50 rows per page. This search has taken 7.411s to perform.

Transcript Name Description Chr Start End Strand Domain predictions GO predictions
Lj1g3v2035180.1
n.a. PREDICTED: serine/threonine-protein kinase AFC3-like [Glycine max] gi|356515564|ref|XP_003526469.1| chr1 23853820 23854909 -
2 domain predictions
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Lj1g3v2035180.2
n.a. Serine/threonine protein kinase AFC3 [Medicago truncatula] gi|357466609|ref|XP_003603589.1| chr1 23853820 23857814 -
2 domain predictions
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Lj1g3v2035180.3
n.a. PREDICTED: serine/threonine-protein kinase AFC3-like [Glycine max] gi|356515564|ref|XP_003526469.1| chr1 23853820 23857767 -
2 domain predictions
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Lj1g3v2065420.1
n.a. PREDICTED: casein kinase I isoform delta-like [Glycine max] gi|356515601|ref|XP_003526487.1| chr1 24377875 24383177 +
2 domain predictions
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Lj1g3v2072070.1
n.a. PREDICTED: probably inactive leucine-rich repeat receptor-like protein kinase At2g25790-like [Glycine max] gi|356518354|ref|XP_003527844.1| chr1 24594650 24599026 -
2 domain predictions
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Lj1g3v2093240.1
n.a. Casein kinase I protein [Theobroma cacao] gi|508782527|gb|EOY29783.1| chr1 24659751 24667244 +
2 domain predictions
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Lj1g3v2093240.2
n.a. Casein kinase I protein [Theobroma cacao] gi|508782527|gb|EOY29783.1| chr1 24659751 24667244 +
2 domain predictions
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Lj1g3v2095470.1
n.a. PREDICTED: receptor-like protein kinase HSL1-like isoform X1 [Cicer arietinum] gi|502131757|ref|XP_004501091.1| chr1 24754477 24763730 +
2 domain predictions
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Lj1g3v2095520.1
n.a. PREDICTED: serine/threonine-protein kinase Aurora-1-like isoform X1 [Cicer arietinum] gi|502131750|ref|XP_004501089.1| chr1 24775620 24780955 -
2 domain predictions
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Lj1g3v2096140.1
n.a. PREDICTED: receptor-like protein kinase HSL1-like [Glycine max] gi|356510067|ref|XP_003523762.1| chr1 25083270 25086894 -
2 domain predictions
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Lj1g3v2096160.1
n.a. PREDICTED: receptor-like protein kinase HAIKU2-like [Glycine max] gi|356507963|ref|XP_003522732.1| chr1 25102415 25119448 -
2 domain predictions
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Lj1g3v2127230.1
n.a. PREDICTED: cyclin-dependent kinase E-1-like isoform X1 [Cicer arietinum] gi|502137170|ref|XP_004502993.1| chr1 25593989 25601361 +
2 domain predictions
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Lj1g3v2141160.1
n.a. PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At4g36180-like [Cicer arietinum] gi|502131353|ref|XP_004500957.1| chr1 25859190 25863184 +
2 domain predictions
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Lj1g3v2264920.1
n.a. PREDICTED: tyrosine-protein kinase TXK-like [Glycine max] gi|356509608|ref|XP_003523539.1| chr1 26568280 26576170 -
2 domain predictions
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Lj1g3v2264920.2
n.a. PREDICTED: tyrosine-protein kinase TXK-like [Glycine max] gi|356509608|ref|XP_003523539.1| chr1 26568280 26576170 -
2 domain predictions
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Lj1g3v2268430.1
n.a. PREDICTED: probable serine/threonine-protein kinase WNK5-like [Glycine max] gi|356496301|ref|XP_003517007.1| chr1 26716775 26722087 -
2 domain predictions
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Lj1g3v2268460.1
n.a. BR-signaling kinase 1 [Theobroma cacao] gi|508723317|gb|EOY15214.1| chr1 26729863 26738445 -
2 domain predictions
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Lj1g3v2295270.1
n.a. PREDICTED: probable serine/threonine-protein kinase Cx32, chloroplastic-like isoform X1 [Cicer arietinum] gi|502131084|ref|XP_004500869.1| chr1 26958068 26961189 -
2 domain predictions
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Lj1g3v2295270.2
n.a. PREDICTED: probable serine/threonine-protein kinase Cx32, chloroplastic-like isoform X1 [Cicer arietinum] gi|502131084|ref|XP_004500869.1| chr1 26958068 26961189 -
2 domain predictions
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Lj1g3v2295280.1
n.a. PREDICTED: serine/threonine-protein kinase PBS1-like [Cicer arietinum] gi|502131081|ref|XP_004500868.1| chr1 26965209 26969321 -
2 domain predictions
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Lj1g3v2312930.1
n.a. n.a. chr1 27184595 27206641 -
2 domain predictions
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Lj1g3v2312950.1
n.a. PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At3g47570-like [Glycine max] gi|356523290|ref|XP_003530273.1| chr1 27196031 27207565 +
2 domain predictions
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Lj1g3v2313000.1
n.a. PREDICTED: probable leucine-rich repeat receptor-like serine/threonine-protein kinase At3g14840-like isoform X2 [Cicer arietinum] gi|502104059|ref|XP_004492426.1| chr1 27232813 27236764 -
2 domain predictions
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Lj1g3v2372440.1
n.a. PREDICTED: lectin-domain containing receptor kinase VI.3-like [Glycine max] gi|356566703|ref|XP_003551569.1| chr1 27925423 27927990 -
2 domain predictions
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Lj1g3v2372440.2
n.a. PREDICTED: lectin-domain containing receptor kinase VI.3-like [Glycine max] gi|356566703|ref|XP_003551569.1| chr1 27925423 27927990 -
2 domain predictions
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Lj1g3v2377960.1
n.a. PREDICTED: probable inactive leucine-rich repeat receptor-like protein kinase At1g66830-like [Glycine max] gi|356521068|ref|XP_003529180.1| chr1 28075457 28079707 +
2 domain predictions
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Lj1g3v2377960.2
n.a. Receptor protein kinase-like protein [Medicago truncatula] gi|357506189|ref|XP_003623383.1| chr1 28075457 28082926 +
2 domain predictions
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Lj1g3v2404330.1
n.a. PREDICTED: dual specificity protein kinase pyk1-like [Glycine max] gi|356497930|ref|XP_003517809.1| chr1 28252845 28256855 -
2 domain predictions
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Lj1g3v2449150.1
n.a. PREDICTED: CBL-interacting protein kinase 2-like [Glycine max] gi|356568210|ref|XP_003552306.1| chr1 28636322 28639200 +
2 domain predictions
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Lj1g3v2482360.1
n.a. PREDICTED: probable receptor-like protein kinase At5g15080-like [Cicer arietinum] gi|502104485|ref|XP_004492555.1| chr1 28741106 28745158 +
2 domain predictions
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Lj1g3v2482450.1
n.a. PREDICTED: probably inactive leucine-rich repeat receptor-like protein kinase At3g28040-like [Glycine max] gi|356530171|ref|XP_003533657.1| chr1 28788792 28793022 -
2 domain predictions
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Lj1g3v2482470.1
n.a. LysM type receptor kinase [Lotus japonicus] gi|290490590|dbj|BAI79282.1| chr1 28801247 28803493 +
2 domain predictions
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Lj1g3v2512570.1
n.a. PREDICTED: serine/threonine-protein kinase HT1-like [Glycine max] gi|356532165|ref|XP_003534644.1| chr1 28907232 28911758 -
2 domain predictions
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Lj1g3v2512570.2
n.a. PREDICTED: serine/threonine-protein kinase HT1-like [Glycine max] gi|356532165|ref|XP_003534644.1| chr1 28907232 28911758 -
2 domain predictions
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Lj1g3v2512720.1
n.a. PREDICTED: probable serine/threonine-protein kinase WNK5 [Glycine max] gi|356566796|ref|XP_003551613.1| chr1 28980445 28986434 +
2 domain predictions
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Lj1g3v2512720.2
n.a. with no lysine kinase 10 [Glycine max] gi|351723577|ref|NP_001236004.1| chr1 28980445 28986434 +
2 domain predictions
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Lj1g3v2533770.1
n.a. FERONIA receptor-like kinase precursor [Glycine max] gi|351726958|ref|NP_001237656.1| chr1 29029722 29034240 +
2 domain predictions
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Lj1g3v2534820.1
n.a. PREDICTED: serine/threonine-protein kinase STN8, chloroplastic-like [Glycine max] gi|356506624|ref|XP_003522077.1| chr1 29056883 29061685 +
2 domain predictions
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Lj1g3v2536060.1
n.a. PREDICTED: probable inactive receptor kinase At5g58300-like [Glycine max] gi|356566806|ref|XP_003551618.1| chr1 29149727 29155785 -
2 domain predictions
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Lj1g3v2536140.1
n.a. PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At1g06840-like isoform 1 [Glycine max] gi|356568252|ref|XP_003552327.1| chr1 29206704 29216049 +
2 domain predictions
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Lj1g3v2556400.1
n.a. Kinase-like protein [Medicago truncatula] gi|357497875|ref|XP_003619226.1| chr1 29409181 29409829 +
2 domain predictions
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Lj1g3v2580580.1
n.a. PREDICTED: serine/threonine-protein kinase At5g01020-like [Glycine max] gi|356532117|ref|XP_003534620.1| chr1 29498855 29502735 +
2 domain predictions
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Lj1g3v2611330.1
n.a. PREDICTED: shaggy-related protein kinase theta-like [Glycine max] gi|356568314|ref|XP_003552357.1| chr1 30157184 30162713 -
2 domain predictions
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Lj1g3v2611530.1
n.a. PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase At1g11330-like [Glycine max] gi|356524497|ref|XP_003530865.1| chr1 30273486 30276880 -
2 domain predictions
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Lj1g3v2612680.1
n.a. PREDICTED: TP53-regulating kinase-like isoform X1 [Cicer arietinum] gi|502129523|ref|XP_004500333.1| chr1 30322942 30328402 -
2 domain predictions
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Lj1g3v2612680.2
n.a. PREDICTED: TP53-regulating kinase-like isoform X1 [Cicer arietinum] gi|502129523|ref|XP_004500333.1| chr1 30322942 30328402 -
2 domain predictions
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Lj1g3v2627670.1
n.a. PREDICTED: serine/threonine-protein kinase RIO1-like [Glycine max] gi|356568362|ref|XP_003552380.1| chr1 30713034 30718538 -
2 domain predictions
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Lj1g3v2628760.1
n.a. PREDICTED: serine/threonine-protein kinase Aurora-3-like [Glycine max] gi|356545969|ref|XP_003541405.1| chr1 30765146 30766888 +
2 domain predictions
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Lj1g3v2634060.1
n.a. PREDICTED: probable serine/threonine-protein kinase At5g41260-like [Cicer arietinum] gi|502105092|ref|XP_004492722.1| chr1 30853233 30861338 +
2 domain predictions
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Lj1g3v2634060.2
n.a. PREDICTED: probable serine/threonine-protein kinase At5g41260-like [Cicer arietinum] gi|502105092|ref|XP_004492722.1| chr1 30853233 30861325 +
2 domain predictions
 –