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TREX

Transcript Explorer
for L. japonicus reference genomes

The Transcript Explorer tool can be used to search for candidate Lotus genes using user-defined keywords, or to comb a specific genomic interval—a combination of chromosome and position range—for genes/transcripts of interest.

Repeat Search

  • IPR001810
Separate each keyword, or gene/transcript ID, with a comma or tab. Spaces are not accepted as delimiters due to their potential use in boolean searches.
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Download the entire search result as a CSV file.

We have found 1082 results. Now displaying 2 of 22 with 50 rows per page. This search has taken 5.965s to perform.

Transcript Name Description Chr Start End Strand Domain predictions GO predictions
Lj0g3v0108459.1
n.a. F-box protein SKIP16 [Medicago truncatula] gi|357473077|ref|XP_003606823.1| chr0 46872576 46880319 +
4 domain predictions
1 GO term
Lj0g3v0108459.2
n.a. expressed protein [Oryza sativa Japonica Group] gi|62733972|gb|AAX96081.1| chr0 46872576 46880319 +
4 domain predictions
1 GO term
Lj0g3v0113209.1
n.a. PREDICTED: F-box/kelch-repeat protein At3g23880-like [Glycine max] gi|356513829|ref|XP_003525611.1| chr0 49457787 49458565 +
5 domain predictions
1 GO term
Lj0g3v0113409.1
n.a. PREDICTED: F-box/FBD/LRR-repeat protein At4g26340-like [Glycine max] gi|356527370|ref|XP_003532284.1| chr0 49547357 49549211 -
5 domain predictions
1 GO term
Lj0g3v0120489.1
n.a. PREDICTED: F-box/FBD/LRR-repeat protein At4g26340-like [Glycine max] gi|356527370|ref|XP_003532284.1| chr0 53521986 53523044 -
3 domain predictions
1 GO term
Lj0g3v0120609.1
n.a. PREDICTED: F-box/FBD/LRR-repeat protein At4g26340-like [Glycine max] gi|356527370|ref|XP_003532284.1| chr0 53570674 53571444 -
5 domain predictions
1 GO term
Lj0g3v0120619.2
n.a. PREDICTED: F-box/FBD/LRR-repeat protein At4g26340-like [Glycine max] gi|356527370|ref|XP_003532284.1| chr0 53574469 53576238 -
4 domain predictions
1 GO term
Lj0g3v0121469.1
n.a. PREDICTED: F-box/kelch-repeat protein At3g23880-like [Glycine max] gi|356513829|ref|XP_003525611.1| chr0 54184439 54185327 +
5 domain predictions
1 GO term
Lj0g3v0121729.1
n.a. F-box/LRR-repeat protein [Medicago truncatula] gi|357466215|ref|XP_003603392.1| chr0 54341448 54343319 +
5 domain predictions
1 GO term
Lj0g3v0122739.1
n.a. F-box/LRR-repeat protein [Medicago truncatula] gi|357488837|ref|XP_003614706.1| chr0 54877576 54880836 -
5 domain predictions
1 GO term
Lj0g3v0127389.1
n.a. PREDICTED: phytochrome A-associated F-box protein-like [Glycine max] gi|356505578|ref|XP_003521567.1| chr0 57429291 57431431 +
3 domain predictions
1 GO term
Lj0g3v0127549.1
n.a. PREDICTED: F-box/LRR-repeat protein 4-like [Cicer arietinum] gi|502166912|ref|XP_004514011.1| chr0 57531772 57533693 +
4 domain predictions
1 GO term
Lj0g3v0128519.1
n.a. F-box family protein [Medicago truncatula] gi|357437363|ref|XP_003588957.1| chr0 58053381 58053615 -
4 domain predictions
1 GO term
Lj0g3v0128559.1
n.a. PREDICTED: FBD-associated F-box protein At3g49020-like [Cicer arietinum] gi|502087930|ref|XP_004488685.1| chr0 58074693 58077725 -
4 domain predictions
1 GO term
Lj0g3v0131879.1
n.a. PREDICTED: F-box/LRR-repeat protein 17-like [Cicer arietinum] gi|502115184|ref|XP_004495144.1| chr0 60099907 60102250 +
3 domain predictions
1 GO term
Lj0g3v0134829.1
n.a. PREDICTED: F-box protein At5g39250-like [Cicer arietinum] gi|502091289|ref|XP_004489503.1| chr0 61877909 61881003 -
4 domain predictions
1 GO term
Lj0g3v0141909.1
n.a. F-box protein [Medicago truncatula] gi|357516793|ref|XP_003628685.1| chr0 65503306 65504502 +
2 domain predictions
1 GO term
Lj0g3v0146179.1
n.a. PREDICTED: F-box/kelch-repeat protein At3g23880-like [Glycine max] gi|356513829|ref|XP_003525611.1| chr0 67243544 67245873 +
5 domain predictions
1 GO term
Lj0g3v0147809.1
n.a. MdFBX20 [Malus domestica] gi|301069178|dbj|BAJ11968.1| chr0 68366549 68367442 +
2 domain predictions
1 GO term
Lj0g3v0162159.1
n.a. PREDICTED: F-box/kelch-repeat protein At1g23390-like [Cicer arietinum] gi|502092900|ref|XP_004489820.1| chr0 76451384 76451764 +
2 domain predictions
1 GO term
Lj0g3v0162589.1
n.a. n.a. chr0 76730819 76734702 -
5 domain predictions
1 GO term
Lj0g3v0167339.1
n.a. PREDICTED: F-box/kelch-repeat protein At3g06240-like [Glycine max] gi|356561408|ref|XP_003548973.1| chr0 79577012 79579215 -
5 domain predictions
1 GO term
Lj0g3v0171449.1
n.a. F-box/LRR-repeat protein [Medicago truncatula] gi|357488837|ref|XP_003614706.1| chr0 82196476 82197961 -
4 domain predictions
1 GO term
Lj0g3v0172449.1
n.a. PREDICTED: histone-lysine N-methyltransferase SUVR3-like [Glycine max] gi|356574501|ref|XP_003555385.1| chr0 82853035 82858979 -
2 domain predictions
1 GO term
Lj0g3v0174489.1
n.a. PREDICTED: F-box/kelch-repeat protein At3g06240-like [Glycine max] gi|356561408|ref|XP_003548973.1| chr0 84147321 84148019 -
4 domain predictions
1 GO term
Lj0g3v0177849.1
n.a. PREDICTED: F-box/FBD/LRR-repeat protein At4g26340-like [Glycine max] gi|356527370|ref|XP_003532284.1| chr0 86099922 86103273 -
5 domain predictions
1 GO term
Lj0g3v0185209.1
n.a. PREDICTED: F-box/LRR-repeat protein At4g14103-like isoform X1 [Cicer arietinum] gi|502142314|ref|XP_004504896.1| chr0 90107521 90109204 -
4 domain predictions
1 GO term
Lj0g3v0185209.2
n.a. PREDICTED: F-box/LRR-repeat protein At4g14103-like isoform X1 [Cicer arietinum] gi|502142314|ref|XP_004504896.1| chr0 90107521 90109252 -
4 domain predictions
1 GO term
Lj0g3v0186729.1
n.a. f-box family protein [Populus trichocarpa] gi|224082450|ref|XP_002306697.1| chr0 91059576 91063567 -
3 domain predictions
1 GO term
Lj0g3v0187919.1
n.a. PREDICTED: probable F-box protein At1g60180-like [Glycine max] gi|356570871|ref|XP_003553607.1| chr0 91706203 91708345 -
2 domain predictions
1 GO term
Lj0g3v0188089.1
n.a. PREDICTED: F-box/kelch-repeat protein At3g06240-like [Glycine max] gi|356519966|ref|XP_003528639.1| chr0 91843133 91846076 -
4 domain predictions
1 GO term
Lj0g3v0191509.1
n.a. PREDICTED: F-box/kelch-repeat protein At3g61590-like [Cicer arietinum] gi|502156951|ref|XP_004510707.1| chr0 93577822 93578314 +
4 domain predictions
1 GO term
Lj0g3v0193659.1
n.a. PREDICTED: F-box protein At5g07670-like [Cicer arietinum] gi|502178851|ref|XP_004516334.1| chr0 94571839 94574475 +
2 domain predictions
1 GO term
Lj0g3v0194019.1
n.a. PREDICTED: F-box/kelch-repeat protein At3g06240-like [Glycine max] gi|356561408|ref|XP_003548973.1| chr0 94681433 94682569 +
5 domain predictions
1 GO term
Lj0g3v0194029.1
n.a. PREDICTED: F-box/kelch-repeat protein At3g06240-like [Glycine max] gi|356561408|ref|XP_003548973.1| chr0 94685360 94686562 +
5 domain predictions
1 GO term
Lj0g3v0194509.1
n.a. PREDICTED: F-box protein PP2-A12-like [Cicer arietinum] gi|502160000|ref|XP_004511601.1| chr0 94894575 94898914 -
2 domain predictions
1 GO term
Lj0g3v0194509.2
n.a. F-box family protein [Medicago truncatula] gi|357481719|ref|XP_003611145.1| chr0 94898101 94898914 -
2 domain predictions
1 GO term
Lj0g3v0194669.1
n.a. F-box/LRR-repeat protein [Medicago truncatula] gi|357452701|ref|XP_003596627.1| chr0 94948144 94949100 +
2 domain predictions
1 GO term
Lj0g3v0195009.1
n.a. PREDICTED: F-box/kelch-repeat protein At3g23880-like [Cicer arietinum] gi|502078956|ref|XP_004486107.1| chr0 95106719 95107111 +
3 domain predictions
1 GO term
Lj0g3v0199389.1
n.a. PREDICTED: F-box/kelch-repeat protein At3g23880-like isoform X1 [Cicer arietinum] gi|502167889|ref|XP_004514274.1| chr0 97706367 97707379 +
5 domain predictions
1 GO term
Lj0g3v0199419.1
n.a. F-box family protein [Arabidopsis lyrata subsp]. lyrata] gi|297803460|ref|XP_002869614.1| chr0 97745069 97745764 +
3 domain predictions
1 GO term
Lj0g3v0199439.1
n.a. PREDICTED: F-box/FBD/LRR-repeat protein At4g26340-like [Cicer arietinum] gi|502154994|ref|XP_004509922.1| chr0 97754501 97757228 +
3 domain predictions
1 GO term
Lj0g3v0199439.2
n.a. PREDICTED: F-box/FBD/LRR-repeat protein At4g26340-like [Cicer arietinum] gi|502154994|ref|XP_004509922.1| chr0 97754501 97757228 +
3 domain predictions
1 GO term
Lj0g3v0199519.1
n.a. F-box/LRR-repeat protein [Medicago truncatula] gi|357488845|ref|XP_003614710.1| chr0 97941211 97942563 +
5 domain predictions
1 GO term
Lj0g3v0200009.1
n.a. PREDICTED: F-box only protein 6-like [Glycine max] gi|356522353|ref|XP_003529811.1| chr0 98564402 98564829 -
4 domain predictions
1 GO term
Lj0g3v0200139.1
n.a. F-box/LRR-repeat protein [Medicago truncatula] gi|357468013|ref|XP_003604291.1| chr0 98666554 98669005 +
3 domain predictions
1 GO term
Lj0g3v0201159.1
n.a. F-box/FBD/LRR-repeat protein [Medicago truncatula] gi|357510179|ref|XP_003625378.1| chr0 99403464 99405212 -
5 domain predictions
1 GO term
Lj0g3v0201159.2
n.a. F-box/FBD/LRR-repeat protein [Medicago truncatula] gi|357510179|ref|XP_003625378.1| chr0 99403464 99405212 -
5 domain predictions
1 GO term
Lj0g3v0201349.1
n.a. F-box family protein [Medicago truncatula] gi|357471471|ref|XP_003606020.1| chr0 99562059 99563063 -
4 domain predictions
1 GO term
Lj0g3v0202099.1
n.a. PREDICTED: F-box/LRR-repeat protein At4g14103-like isoform X1 [Cicer arietinum] gi|502142314|ref|XP_004504896.1| chr0 100031145 100033851 +
4 domain predictions
1 GO term