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TREX

Transcript Explorer
for L. japonicus reference genomes

The Transcript Explorer tool can be used to search for candidate Lotus genes using user-defined keywords, or to comb a specific genomic interval—a combination of chromosome and position range—for genes/transcripts of interest.

Repeat Search

  • IPR001810
Separate each keyword, or gene/transcript ID, with a comma or tab. Spaces are not accepted as delimiters due to their potential use in boolean searches.
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Download the entire search result as a CSV file.

We have found 1082 results. Now displaying 4 of 22 with 50 rows per page. This search has taken 6.646s to perform.

Transcript Name Description Chr Start End Strand Domain predictions GO predictions
Lj0g3v0286199.1
n.a. PREDICTED: F-box/kelch-repeat protein At3g06240-like [Cicer arietinum] gi|502183807|ref|XP_004517219.1| chr0 148673741 148674946 +
5 domain predictions
1 GO term
Lj0g3v0286519.1
n.a. PREDICTED: F-box/LRR-repeat protein 13-like isoform X1 [Cicer arietinum] gi|502146833|ref|XP_004506628.1| chr0 148857662 148859607 +
4 domain predictions
1 GO term
Lj0g3v0287829.1
n.a. PREDICTED: F-box/LRR-repeat protein At4g14103-like isoform X1 [Cicer arietinum] gi|502142314|ref|XP_004504896.1| chr0 149578876 149580648 -
3 domain predictions
1 GO term
Lj0g3v0287839.1
n.a. PREDICTED: F-box/LRR-repeat protein At4g14103-like isoform X1 [Cicer arietinum] gi|502142314|ref|XP_004504896.1| chr0 149581625 149585863 -
4 domain predictions
1 GO term
Lj0g3v0287859.1
n.a. PREDICTED: F-box/LRR-repeat protein At4g14103-like isoform X1 [Cicer arietinum] gi|502142314|ref|XP_004504896.1| chr0 149591628 149596350 -
3 domain predictions
1 GO term
Lj0g3v0287859.2
n.a. PREDICTED: F-box/LRR-repeat protein At4g14103-like isoform X1 [Cicer arietinum] gi|502142314|ref|XP_004504896.1| chr0 149591628 149596350 -
3 domain predictions
1 GO term
Lj0g3v0291889.1
n.a. F-box protein [Medicago truncatula] gi|357492277|ref|XP_003616427.1| chr0 151433481 151436013 -
2 domain predictions
1 GO term
Lj0g3v0293479.1
n.a. F-box protein [Medicago truncatula] gi|357492277|ref|XP_003616427.1| chr0 152340997 152342106 +
2 domain predictions
1 GO term
Lj0g3v0294869.1
n.a. PREDICTED: F-box/kelch-repeat protein At3g23880-like [Cicer arietinum] gi|502102538|ref|XP_004492107.1| chr0 153282999 153283844 +
5 domain predictions
1 GO term
Lj0g3v0294919.1
n.a. PREDICTED: F-box/kelch-repeat protein At3g23880-like [Glycine max] gi|356555602|ref|XP_003546119.1| chr0 153289667 153295434 +
5 domain predictions
1 GO term
Lj0g3v0295679.1
n.a. F-box [Medicago truncatula] gi|357483729|ref|XP_003612151.1| chr0 153629302 153630728 -
5 domain predictions
1 GO term
Lj0g3v0295709.1
n.a. F-box family protein [Medicago truncatula] gi|357483733|ref|XP_003612153.1| chr0 153633721 153636995 -
5 domain predictions
1 GO term
Lj0g3v0296549.1
n.a. PREDICTED: F-box/LRR-repeat protein At4g14103-like isoform X1 [Cicer arietinum] gi|502142314|ref|XP_004504896.1| chr0 154065103 154066921 +
3 domain predictions
1 GO term
Lj0g3v0296569.1
n.a. F-box family protein [Medicago truncatula] gi|357471471|ref|XP_003606020.1| chr0 154071873 154073186 +
3 domain predictions
1 GO term
Lj0g3v0297489.1
n.a. PREDICTED: F-box protein At4g00755-like [Glycine max] gi|356530898|ref|XP_003534016.1| chr0 154657397 154663840 -
2 domain predictions
1 GO term
Lj0g3v0299199.1
n.a. PREDICTED: F-box protein At2g32560-like [Glycine max] gi|356554183|ref|XP_003545428.1| chr0 155508046 155509481 +
3 domain predictions
1 GO term
Lj0g3v0300589.1
n.a. F-box family protein [Theobroma cacao] gi|508720297|gb|EOY12194.1| chr0 156208833 156210094 +
3 domain predictions
1 GO term
Lj0g3v0300779.1
n.a. PREDICTED: F-box/LRR-repeat protein At4g14103-like isoform X1 [Cicer arietinum] gi|502142314|ref|XP_004504896.1| chr0 156330609 156333193 -
3 domain predictions
1 GO term
Lj0g3v0301359.1
n.a. PREDICTED: F-box protein SKIP19-like [Glycine max] gi|356546510|ref|XP_003541669.1| chr0 156606580 156607755 +
3 domain predictions
1 GO term
Lj0g3v0302029.1
n.a. PREDICTED: F-box/kelch-repeat protein At1g22040-like [Glycine max] gi|356515826|ref|XP_003526599.1| chr0 157051484 157054102 +
5 domain predictions
1 GO term
Lj0g3v0302589.1
n.a. PREDICTED: F-box/kelch-repeat protein At3g23880-like [Glycine max] gi|356513829|ref|XP_003525611.1| chr0 157424722 157425666 +
5 domain predictions
1 GO term
Lj0g3v0307729.1
n.a. galactose oxidase [Trifolium repens] gi|289540906|gb|ADD09580.1| chr0 160659845 160660790 -
4 domain predictions
1 GO term
Lj0g3v0314529.1
n.a. PREDICTED: F-box/LRR-repeat protein At4g14103-like isoform X1 [Cicer arietinum] gi|502175296|ref|XP_004515704.1| chr0 164171821 164175134 +
4 domain predictions
1 GO term
Lj0g3v0314529.2
n.a. PREDICTED: F-box/LRR-repeat protein At4g14103-like isoform X1 [Cicer arietinum] gi|502175296|ref|XP_004515704.1| chr0 164171821 164175134 +
4 domain predictions
1 GO term
Lj0g3v0316159.1
n.a. PREDICTED: F-box/FBD/LRR-repeat protein At4g26340-like [Glycine max] gi|356527370|ref|XP_003532284.1| chr0 165084630 165086556 +
5 domain predictions
1 GO term
Lj0g3v0319519.1
n.a. F-box/FBD/LRR-repeat protein [Medicago truncatula] gi|357510183|ref|XP_003625380.1| chr0 166807997 166809997 -
4 domain predictions
1 GO term
Lj0g3v0321149.1
n.a. PREDICTED: F-box/LRR-repeat protein At4g14103-like isoform X1 [Cicer arietinum] gi|502142314|ref|XP_004504896.1| chr0 167643676 167645685 -
3 domain predictions
1 GO term
Lj0g3v0322559.1
n.a. F-box/kelch-repeat protein [Medicago truncatula] gi|357490589|ref|XP_003615582.1| chr0 168473019 168474251 -
5 domain predictions
1 GO term
Lj0g3v0322939.1
n.a. PREDICTED: F-box/kelch-repeat protein At3g06240-like [Glycine max] gi|356561408|ref|XP_003548973.1| chr0 168641124 168643511 -
5 domain predictions
1 GO term
Lj0g3v0322949.1
n.a. F-box protein PP2-B3 [Medicago truncatula] gi|357441795|ref|XP_003591175.1| chr0 168646472 168648699 -
5 domain predictions
1 GO term
Lj0g3v0324879.1
n.a. PREDICTED: F-box/kelch-repeat protein At3g06240-like [Glycine max] gi|356561408|ref|XP_003548973.1| chr0 169853975 169855366 -
4 domain predictions
1 GO term
Lj0g3v0333079.1
n.a. PREDICTED: F-box/FBD/LRR-repeat protein At4g26340-like [Glycine max] gi|356527370|ref|XP_003532284.1| chr0 174303097 174304479 -
5 domain predictions
1 GO term
Lj0g3v0335709.1
n.a. PREDICTED: F-box/kelch-repeat protein At3g06240-like [Glycine max] gi|356519966|ref|XP_003528639.1| chr0 175888348 175890896 +
5 domain predictions
1 GO term
Lj0g3v0336439.1
n.a. PREDICTED: F-box/LRR-repeat protein At4g14103-like isoform X1 [Cicer arietinum] gi|502142314|ref|XP_004504896.1| chr0 176177420 176178682 +
3 domain predictions
1 GO term
Lj0g3v0336609.1
n.a. PREDICTED: F-box protein At3g62230-like [Cucumis sativus] gi|449463581|ref|XP_004149512.1| chr0 176313618 176315408 -
2 domain predictions
1 GO term
Lj0g3v0340419.1
n.a. F-box/LRR-repeat protein [Medicago truncatula] gi|357452697|ref|XP_003596625.1| chr0 178352389 178354306 -
4 domain predictions
1 GO term
Lj0g3v0340429.1
n.a. F-box/LRR-repeat protein [Medicago truncatula] gi|357452701|ref|XP_003596627.1| chr0 178363910 178364854 -
4 domain predictions
1 GO term
Lj0g3v0341649.1
n.a. F-box protein [Medicago truncatula] gi|357507551|ref|XP_003624064.1| chr0 179078858 179079799 +
5 domain predictions
1 GO term
Lj0g3v0347039.1
n.a. PREDICTED: F-box/FBD/LRR-repeat protein At4g26340-like [Glycine max] gi|356527370|ref|XP_003532284.1| chr0 182070481 182080031 +
3 domain predictions
1 GO term
Lj0g3v0347329.1
n.a. Os01g0647000 [Oryza sativa Japonica Group] gi|115438859|ref|NP_001043709.1| chr0 182244676 182247372 +
5 domain predictions
1 GO term
Lj0g3v0350879.1
n.a. F-box/FBD/LRR-repeat protein [Medicago truncatula] gi|357510183|ref|XP_003625380.1| chr0 184435717 184437296 +
2 domain predictions
1 GO term
Lj0g3v0351359.1
n.a. PREDICTED: F-box/kelch-repeat protein At3g23880-like [Glycine max] gi|356513829|ref|XP_003525611.1| chr0 184747308 184749039 +
5 domain predictions
1 GO term
Lj0g3v0353849.1
n.a. PREDICTED: F-box protein At1g60400-like [Glycine max] gi|356529231|ref|XP_003533199.1| chr0 186295743 186297915 +
3 domain predictions
1 GO term
Lj0g3v0353949.1
n.a. PREDICTED: F-box/kelch-repeat protein At3g23880-like [Cicer arietinum] gi|502167973|ref|XP_004514290.1| chr0 186372746 186374532 -
5 domain predictions
1 GO term
Lj0g3v0354469.1
n.a. PREDICTED: F-box/kelch-repeat protein SKIP4-like isoform X1 [Cicer arietinum] gi|502157205|ref|XP_004510793.1| chr0 186685736 186688398 -
2 domain predictions
1 GO term
Lj0g3v0360859.1
n.a. PREDICTED: F-box/kelch-repeat protein At3g23880-like [Glycine max] gi|356513829|ref|XP_003525611.1| chr0 190058620 190059276 -
5 domain predictions
1 GO term
Lj0g3v0361209.1
n.a. PREDICTED: F-box/kelch-repeat protein At3g06240-like [Glycine max] gi|356563620|ref|XP_003550059.1| chr0 190263253 190264237 +
5 domain predictions
1 GO term
Lj0g3v0363059.1
n.a. PREDICTED: F-box protein At1g78280-like [Glycine max] gi|356515772|ref|XP_003526572.1| chr0 191474037 191483682 +
5 domain predictions
1 GO term
Lj1g3v0173650.1
n.a. F-box protein [Medicago truncatula] gi|357485797|ref|XP_003613186.1| chr1 1936553 1941552 +
3 domain predictions
1 GO term
Lj1g3v0244620.1
n.a. PREDICTED: transport inhibitor response 1-like protein-like [Cicer arietinum] gi|502095246|ref|XP_004490408.1| chr1 2407473 2411040 +
2 domain predictions
1 GO term