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Lj0g3v0287829.1

Overview

Field Value
Gene ID Lj0g3v0287829
Transcript ID Lj0g3v0287829.1
Lotus japonicus genome version MG20 v3.0
Description PREDICTED: F-box/LRR-repeat protein At4g14103-like isoform X1 [Cicer arietinum] gi|502142314|ref|XP_004504896.1|
Working Lj name n.a.

Sequence information

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
MobiDBLite
mobidb-lite
1 26 26 – –
PANTHER
PTHR32212:SF65
1 291 291 3.30E-86 –
Phobius
NON_CYTOPLASMIC_DOMAIN
1 319 319 – –
PANTHER
PTHR32212
1 291 291 3.30E-86 –
SUPERFAMILY
SSF81383
15 70 56 1.57E-09
IPR001810
Gene3D
G3DSA:3.80.10.10
23 329 307 1.10E-12
IPR032675
Pfam
PF00646
27 66 40 7.80E-05
IPR001810
SUPERFAMILY
SSF52047
63 332 270 2.51E-06 –
PANTHER
PTHR32212
308 331 24 3.30E-86 –
PANTHER
PTHR32212:SF65
308 331 24 3.30E-86 –
Phobius
TRANSMEMBRANE
320 338 19 – –
Phobius
CYTOPLASMIC_DOMAIN
339 387 49 – –

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0005515
Molecular function Protein binding Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
Subterm of

Genome browser

LORE1 insertions 13

Expression data

Expression pattern

Expression pattern of Lj0g3v0287829.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj0g3v0287829.1, powered by CORGI.

Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.