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TREX

Transcript Explorer
for L. japonicus reference genomes

The Transcript Explorer tool can be used to search for candidate Lotus genes using user-defined keywords, or to comb a specific genomic interval—a combination of chromosome and position range—for genes/transcripts of interest.

Repeat Search

  • IPR008972
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We have found 246 results. Now displaying 4 of 5 with 50 rows per page. This search has taken 7.885s to perform.

Transcript Name Description Chr Start End Strand Domain predictions GO predictions
LotjaGi2g1v0008300.1
n.a. Blue copper protein; TAIR: AT2G15780.1 Cupredoxin superfamily protein; Swiss-Prot: sp|A2BLW3|TRM56_HYPBU tRNA (cytidine(56)-2'-O)-methyltransferase; TrEMBL-Plants: tr|I3STL3|I3STL3_LOTJA Uncharacterized protein; Found in the gene: LotjaGi2g1v0008300 LjG1.1_chr2 2787268 2788323 -
3 domain predictions
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LotjaGi2g1v0078200.1
n.a. Blue copper protein; TAIR: AT2G15780.1 Cupredoxin superfamily protein; Swiss-Prot: sp|Q8LC95|ENL3_ARATH Early nodulin-like protein 3; TrEMBL-Plants: tr|I3STL3|I3STL3_LOTJA Uncharacterized protein; Found in the gene: LotjaGi2g1v0078200 LjG1.1_chr2 21019924 21026776 -
3 domain predictions
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LotjaGi2g1v0078300.1
n.a. Blue copper protein; TAIR: AT2G15780.1 Cupredoxin superfamily protein; Swiss-Prot: sp|Q8LC95|ENL3_ARATH Early nodulin-like protein 3; TrEMBL-Plants: tr|I3STL3|I3STL3_LOTJA Uncharacterized protein; Found in the gene: LotjaGi2g1v0078300 LjG1.1_chr2 21078707 21079850 -
3 domain predictions
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LotjaGi2g1v0087600.1
n.a. Blue copper protein; TAIR: AT3G27200.1 Cupredoxin superfamily protein; Swiss-Prot: sp|O82081|UCC1_ARATH Uclacyanin 1; TrEMBL-Plants: tr|C6SYZ1|C6SYZ1_SOYBN Putative uncharacterized protein; Found in the gene: LotjaGi2g1v0087600 LjG1.1_chr2 25556079 25560129 +
3 domain predictions
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LotjaGi2g1v0112400.1
n.a. Plant self-incompatibility protein S1 family; TAIR: AT4G16195.1 Plant self-incompatibility protein S1 family; Swiss-Prot: sp|O81465|PUM15_ARATH Pumilio homolog 15; TrEMBL-Plants: tr|I3SS90|I3SS90_LOTJA Uncharacterized protein; Found in the gene: LotjaGi2g1v0112400 LjG1.1_chr2 40945881 40946439 -
2 domain predictions
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LotjaGi2g1v0181700.1
n.a. Blue copper protein; TAIR: AT2G32300.1 uclacyanin 1; Swiss-Prot: sp|O82081|UCC1_ARATH Uclacyanin 1; TrEMBL-Plants: tr|A0A0L9VHP9|A0A0L9VHP9_PHAAN Uncharacterized protein; Found in the gene: LotjaGi2g1v0181700 LjG1.1_chr2 60347600 60349517 +
3 domain predictions
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LotjaGi2g1v0262400.1
n.a. Early nodulin-like protein; TAIR: AT2G27035.1 early nodulin-like protein 20; Swiss-Prot: sp|Q39131|LAML_ARATH Lamin-like protein; TrEMBL-Plants: tr|G7KLC9|G7KLC9_MEDTR Plastocyanin-like domain protein; Found in the gene: LotjaGi2g1v0262400 LjG1.1_chr2 73135630 73138260 -
3 domain predictions
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LotjaGi2g1v0262600.1
n.a. Early nodulin-like protein; TAIR: AT5G15350.1 early nodulin-like protein 17; Swiss-Prot: sp|Q39131|LAML_ARATH Lamin-like protein; TrEMBL-Plants: tr|I3S778|I3S778_LOTJA Uncharacterized protein; Found in the gene: LotjaGi2g1v0262600 LjG1.1_chr2 73139752 73146201 -
3 domain predictions
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LotjaGi2g1v0388900.1
n.a. Laccase; TAIR: AT5G03260.1 laccase 11; Swiss-Prot: sp|Q8VZA1|LAC11_ARATH Laccase-11; TrEMBL-Plants: tr|I1LHT8|I1LHT8_SOYBN Laccase; Found in the gene: LotjaGi2g1v0388900 LjG1.1_chr2 88493197 88497286 -
3 domain predictions
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LotjaGi2g1v0389000.1
n.a. Laccase; TAIR: AT5G03260.1 laccase 11; Swiss-Prot: sp|Q8VZA1|LAC11_ARATH Laccase-11; TrEMBL-Plants: tr|V7CFI0|V7CFI0_PHAVU Laccase; Found in the gene: LotjaGi2g1v0389000 LjG1.1_chr2 88499388 88502591 -
3 domain predictions
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LotjaGi2g1v0397800.1
n.a. L-ascorbate oxidase like; TAIR: AT5G66920.1 SKU5 similar 17; Swiss-Prot: sp|P29162|ASOL_TOBAC L-ascorbate oxidase homolog; TrEMBL-Plants: tr|A0A151THZ2|A0A151THZ2_CAJCA L-ascorbate oxidase isogeny; Found in the gene: LotjaGi2g1v0397800 LjG1.1_chr2 89495973 89499832 -
3 domain predictions
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LotjaGi2g1v0397800.2
n.a. L-ascorbate oxidase like; TAIR: AT5G66920.1 SKU5 similar 17; Swiss-Prot: sp|P29162|ASOL_TOBAC L-ascorbate oxidase homolog; TrEMBL-Plants: tr|A0A151THZ2|A0A151THZ2_CAJCA L-ascorbate oxidase isogeny; Found in the gene: LotjaGi2g1v0397800 LjG1.1_chr2 89496979 89499648 -
3 domain predictions
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LotjaGi2g1v0397800.3
n.a. L-ascorbate oxidase like; TAIR: AT5G66920.1 SKU5 similar 17; Swiss-Prot: sp|Q00624|ASOL_BRANA L-ascorbate oxidase homolog; TrEMBL-Plants: tr|I1J937|I1J937_SOYBN Uncharacterized protein; Found in the gene: LotjaGi2g1v0397800 LjG1.1_chr2 89497078 89499208 -
3 domain predictions
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LotjaGi3g1v0020300.1
n.a. Early nodulin-like protein; TAIR: AT1G79800.1 early nodulin-like protein 7; Swiss-Prot: sp|Q9SK27|ENL1_ARATH Early nodulin-like protein 1; TrEMBL-Plants: tr|K7M3S2|K7M3S2_SOYBN Uncharacterized protein; Found in the gene: LotjaGi3g1v0020300 LjG1.1_chr3 2087722 2088591 -
3 domain predictions
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LotjaGi3g1v0036600.1
n.a. Blue copper protein; TAIR: AT3G17675.1 Cupredoxin superfamily protein; Swiss-Prot: sp|O82081|UCC1_ARATH Uclacyanin 1; TrEMBL-Plants: tr|G7L0I0|G7L0I0_MEDTR Plastocyanin-like domain protein; Found in the gene: LotjaGi3g1v0036600 LjG1.1_chr3 3979272 3980110 -
3 domain predictions
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LotjaGi3g1v0046800.1
n.a. Early nodulin-like protein; TAIR: AT5G53870.1 early nodulin-like protein 1; Swiss-Prot: sp|Q9T076|ENL2_ARATH Early nodulin-like protein 2; TrEMBL-Plants: tr|A0A072TQN9|A0A072TQN9_MEDTR Plastocyanin-like domain protein; Found in the gene: LotjaGi3g1v0046800 LjG1.1_chr3 4986226 4988315 -
3 domain predictions
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LotjaGi3g1v0068000.1
n.a. Blue copper protein; TAIR: AT2G32300.1 uclacyanin 1; Swiss-Prot: sp|O82081|UCC1_ARATH Uclacyanin 1; TrEMBL-Plants: tr|I3S2A6|I3S2A6_LOTJA Uncharacterized protein; Found in the gene: LotjaGi3g1v0068000 LjG1.1_chr3 7416931 7419151 +
3 domain predictions
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LotjaGi3g1v0097500.1
n.a. Early nodulin-like protein; TAIR: AT4G28365.1 early nodulin-like protein 3; Swiss-Prot: sp|Q9T076|ENL2_ARATH Early nodulin-like protein 2; TrEMBL-Plants: tr|I3SQD6|I3SQD6_LOTJA Uncharacterized protein; Found in the gene: LotjaGi3g1v0097500 LjG1.1_chr3 12157246 12158614 +
3 domain predictions
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LotjaGi3g1v0149300.1
n.a. Early nodulin-like protein; TAIR: AT3G20570.1 early nodulin-like protein 9; Swiss-Prot: sp|Q9SK27|ENL1_ARATH Early nodulin-like protein 1; TrEMBL-Plants: tr|I3S731|I3S731_LOTJA Uncharacterized protein; Found in the gene: LotjaGi3g1v0149300 LjG1.1_chr3 20126988 20137643 -
3 domain predictions
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LotjaGi3g1v0153700_LC.1
n.a. Early nodulin-like protein; TAIR: AT5G53870.2 early nodulin-like protein 1; Swiss-Prot: sp|Q9T076|ENL2_ARATH Early nodulin-like protein 2; TrEMBL-Plants: tr|A0A1J7I9P4|A0A1J7I9P4_LUPAN Uncharacterized protein; Found in the gene: LotjaGi3g1v0153700_LC LjG1.1_chr3 20831550 20834850 -
3 domain predictions
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LotjaGi3g1v0187600.1
n.a. L-ascorbate oxidase like; TAIR: AT4G22010.1 SKU5 similar 4; Swiss-Prot: sp|Q00624|ASOL_BRANA L-ascorbate oxidase homolog; TrEMBL-Plants: tr|A0A151RMQ3|A0A151RMQ3_CAJCA L-ascorbate oxidase isogeny; Found in the gene: LotjaGi3g1v0187600 LjG1.1_chr3 26367891 26371921 -
3 domain predictions
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LotjaGi3g1v0192300.1
n.a. Blue copper protein; TAIR: AT2G32300.1 uclacyanin 1; Swiss-Prot: sp|O82081|UCC1_ARATH Uclacyanin 1; TrEMBL-Plants: tr|A0A151QU90|A0A151QU90_CAJCA Blue copper protein; Found in the gene: LotjaGi3g1v0192300 LjG1.1_chr3 27783670 27789111 +
3 domain predictions
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LotjaGi3g1v0211300.1
n.a. Laccase; TAIR: AT2G38080.1 Laccase/Diphenol oxidase family protein; Swiss-Prot: sp|O80434|LAC4_ARATH Laccase-4; TrEMBL-Plants: tr|A0A1J7HEL7|A0A1J7HEL7_LUPAN Uncharacterized protein; Found in the gene: LotjaGi3g1v0211300 LjG1.1_chr3 31647510 31652487 -
3 domain predictions
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LotjaGi3g1v0211300.2
n.a. Laccase; TAIR: AT2G38080.1 Laccase/Diphenol oxidase family protein; Swiss-Prot: sp|O80434|LAC4_ARATH Laccase-4; TrEMBL-Plants: tr|A0A0L9VT48|A0A0L9VT48_PHAAN Laccase; Found in the gene: LotjaGi3g1v0211300 LjG1.1_chr3 31648096 31651058 -
3 domain predictions
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LotjaGi3g1v0237700.1
n.a. Early nodulin-like protein; TAIR: AT3G20570.1 early nodulin-like protein 9; Swiss-Prot: sp|Q8LC95|ENL3_ARATH Early nodulin-like protein 3; TrEMBL-Plants: tr|I3T3A3|I3T3A3_LOTJA Uncharacterized protein; Found in the gene: LotjaGi3g1v0237700 LjG1.1_chr3 38196594 38199520 +
3 domain predictions
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LotjaGi3g1v0328100.1
n.a. Monocopper oxidase-like protein SKU5; TAIR: AT4G25240.1 SKU5 similar 1; Swiss-Prot: sp|Q8VXX5|SKS1_ARATH Monocopper oxidase-like protein SKS1; TrEMBL-Plants: tr|A0A151RKB0|A0A151RKB0_CAJCA Monocopper oxidase-like protein SKS1; Found in the gene: LotjaGi3g1v0328100 LjG1.1_chr3 69554853 69560764 +
3 domain predictions
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LotjaGi3g1v0328100.2
n.a. Monocopper oxidase-like protein SKU5; TAIR: AT4G25240.1 SKU5 similar 1; Swiss-Prot: sp|Q8VXX5|SKS1_ARATH Monocopper oxidase-like protein SKS1; TrEMBL-Plants: tr|A0A151RKB0|A0A151RKB0_CAJCA Monocopper oxidase-like protein SKS1; Found in the gene: LotjaGi3g1v0328100 LjG1.1_chr3 69556075 69560316 +
3 domain predictions
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LotjaGi3g1v0348000.1
n.a. Blue copper-like protein; TAIR: AT5G15350.1 early nodulin-like protein 17; Swiss-Prot: sp|Q39131|LAML_ARATH Lamin-like protein; TrEMBL-Plants: tr|I3S4H8|I3S4H8_LOTJA Uncharacterized protein; Found in the gene: LotjaGi3g1v0348000 LjG1.1_chr3 72543071 72544502 +
3 domain predictions
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LotjaGi3g1v0367400.1
n.a. Basic blue protein; TAIR: AT2G02850.1 plantacyanin; Swiss-Prot: sp|Q8LG89|BABL_ARATH Basic blue protein; TrEMBL-Plants: tr|I3SU85|I3SU85_LOTJA Uncharacterized protein; Found in the gene: LotjaGi3g1v0367400 LjG1.1_chr3 75350287 75351309 -
3 domain predictions
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LotjaGi3g1v0367500.1
n.a. Basic blue protein; TAIR: AT2G02850.1 plantacyanin; Swiss-Prot: sp|Q8LG89|BABL_ARATH Basic blue protein; TrEMBL-Plants: tr|I3SJ85|I3SJ85_LOTJA Uncharacterized protein; Found in the gene: LotjaGi3g1v0367500 LjG1.1_chr3 75356205 75357040 -
3 domain predictions
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LotjaGi3g1v0398000.1
n.a. Laccase; TAIR: AT2G46570.1 laccase 6; Swiss-Prot: sp|Q9ZPY2|LAC6_ARATH Laccase-6; TrEMBL-Plants: tr|A0A1J7GP42|A0A1J7GP42_LUPAN Uncharacterized protein; Found in the gene: LotjaGi3g1v0398000 LjG1.1_chr3 79996681 80002824 +
3 domain predictions
 –
LotjaGi3g1v0398000.2
n.a. Laccase; TAIR: AT2G46570.1 laccase 6; Swiss-Prot: sp|Q9ZPY2|LAC6_ARATH Laccase-6; TrEMBL-Plants: tr|A0A072TM83|A0A072TM83_MEDTR Laccase; Found in the gene: LotjaGi3g1v0398000 LjG1.1_chr3 79996777 80005094 +
3 domain predictions
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LotjaGi3g1v0445600.1
n.a. Early nodulin-like protein; TAIR: AT4G28365.1 early nodulin-like protein 3; Swiss-Prot: sp|Q9T076|ENL2_ARATH Early nodulin-like protein 2; TrEMBL-Plants: tr|W9RA80|W9RA80_9ROSA Early nodulin-like protein 1; Found in the gene: LotjaGi3g1v0445600 LjG1.1_chr3 85891022 85892742 -
3 domain predictions
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LotjaGi3g1v0452800.1
n.a. Early nodulin-like protein; TAIR: AT4G28365.1 early nodulin-like protein 3; Swiss-Prot: sp|Q9T076|ENL2_ARATH Early nodulin-like protein 2; TrEMBL-Plants: tr|I3SQD6|I3SQD6_LOTJA Uncharacterized protein; Found in the gene: LotjaGi3g1v0452800 LjG1.1_chr3 86623781 86624982 +
3 domain predictions
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LotjaGi3g1v0467500.1
n.a. L-ascorbate oxidase like; TAIR: AT1G76160.1 SKU5 similar 5; Swiss-Prot: sp|P29162|ASOL_TOBAC L-ascorbate oxidase homolog; TrEMBL-Plants: tr|G7JDL2|G7JDL2_MEDTR Multi-copper oxidase-like protein; Found in the gene: LotjaGi3g1v0467500 LjG1.1_chr3 88300889 88311071 +
3 domain predictions
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LotjaGi3g1v0467500.2
n.a. L-ascorbate oxidase like; TAIR: AT1G76160.1 SKU5 similar 5; Swiss-Prot: sp|P29162|ASOL_TOBAC L-ascorbate oxidase homolog; TrEMBL-Plants: tr|G7JDL2|G7JDL2_MEDTR Multi-copper oxidase-like protein; Found in the gene: LotjaGi3g1v0467500 LjG1.1_chr3 88300922 88311101 +
3 domain predictions
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LotjaGi3g1v0467500.3
n.a. L-ascorbate oxidase like; TAIR: AT1G76160.1 SKU5 similar 5; Swiss-Prot: sp|P29162|ASOL_TOBAC L-ascorbate oxidase homolog; TrEMBL-Plants: tr|G7JDL2|G7JDL2_MEDTR Multi-copper oxidase-like protein; Found in the gene: LotjaGi3g1v0467500 LjG1.1_chr3 88301665 88310812 +
3 domain predictions
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LotjaGi3g1v0489900.1
n.a. Laccase; TAIR: AT2G29130.1 laccase 2; Swiss-Prot: sp|O81081|LAC2_ARATH Laccase-2; TrEMBL-Plants: tr|G7JUW8|G7JUW8_MEDTR Laccase; Found in the gene: LotjaGi3g1v0489900 LjG1.1_chr3 90801789 90805414 -
3 domain predictions
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LotjaGi3g1v0489900.2
n.a. Laccase; TAIR: AT2G29130.1 laccase 2; Swiss-Prot: sp|O81081|LAC2_ARATH Laccase-2; TrEMBL-Plants: tr|I1LQN6|I1LQN6_SOYBN Laccase; Found in the gene: LotjaGi3g1v0489900 LjG1.1_chr3 90802091 90805341 -
3 domain predictions
 –
LotjaGi3g1v0533100.1
n.a. L-ascorbate oxidase like; TAIR: AT1G76160.1 SKU5 similar 5; Swiss-Prot: sp|P29162|ASOL_TOBAC L-ascorbate oxidase homolog; TrEMBL-Plants: tr|I1LIP3|I1LIP3_SOYBN Uncharacterized protein; Found in the gene: LotjaGi3g1v0533100 LjG1.1_chr3 94982425 94986968 -
3 domain predictions
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LotjaGi4g1v0012700.1
n.a. L-ascorbate oxidase like; TAIR: AT4G22010.1 SKU5 similar 4; Swiss-Prot: sp|Q00624|ASOL_BRANA L-ascorbate oxidase homolog; TrEMBL-Plants: tr|I1MR46|I1MR46_SOYBN Uncharacterized protein; Found in the gene: LotjaGi4g1v0012700 LjG1.1_chr4 1542290 1546944 -
3 domain predictions
 –
LotjaGi4g1v0087100.1
n.a. L-ascorbate oxidase-like protein; TAIR: AT3G13400.1 SKU5 similar 13; Swiss-Prot: sp|Q00624|ASOL_BRANA L-ascorbate oxidase homolog; TrEMBL-Plants: tr|I1NDH8|I1NDH8_SOYBN Uncharacterized protein; Found in the gene: LotjaGi4g1v0087100 LjG1.1_chr4 11585236 11589179 +
3 domain predictions
 –
LotjaGi4g1v0087200.1
n.a. L-ascorbate oxidase-like protein; TAIR: AT1G55570.1 SKU5 similar 12; Swiss-Prot: sp|Q00624|ASOL_BRANA L-ascorbate oxidase homolog; TrEMBL-Plants: tr|G7JHJ4|G7JHJ4_MEDTR L-ascorbate oxidase-like protein; Found in the gene: LotjaGi4g1v0087200 LjG1.1_chr4 11601482 11603970 +
3 domain predictions
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LotjaGi4g1v0109500.1
n.a. L-ascorbate oxidase like; TAIR: AT5G66920.1 SKU5 similar 17; Swiss-Prot: sp|Q00624|ASOL_BRANA L-ascorbate oxidase homolog; TrEMBL-Plants: tr|A0A0S3R4H4|A0A0S3R4H4_PHAAN Uncharacterized protein; Found in the gene: LotjaGi4g1v0109500 LjG1.1_chr4 15525824 15530998 +
3 domain predictions
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LotjaGi4g1v0109500.2
n.a. L-ascorbate oxidase like; TAIR: AT5G66920.1 SKU5 similar 17; Swiss-Prot: sp|Q00624|ASOL_BRANA L-ascorbate oxidase homolog; TrEMBL-Plants: tr|A0A0S3R4H4|A0A0S3R4H4_PHAAN Uncharacterized protein; Found in the gene: LotjaGi4g1v0109500 LjG1.1_chr4 15526222 15530616 +
3 domain predictions
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LotjaGi4g1v0109600.1
n.a. L-ascorbate oxidase like; TAIR: AT4G37160.1 SKU5 similar 15; Swiss-Prot: sp|Q00624|ASOL_BRANA L-ascorbate oxidase homolog; TrEMBL-Plants: tr|I1MW18|I1MW18_SOYBN Uncharacterized protein; Found in the gene: LotjaGi4g1v0109600 LjG1.1_chr4 15583116 15588261 +
3 domain predictions
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LotjaGi4g1v0201700_LC.1
n.a. Early nodulin-like protein; TAIR: AT4G27520.1 early nodulin-like protein 2; Swiss-Prot: sp|Q9T076|ENL2_ARATH Early nodulin-like protein 2; TrEMBL-Plants: tr|I3SQD6|I3SQD6_LOTJA Uncharacterized protein; Found in the gene: LotjaGi4g1v0201700_LC LjG1.1_chr4 46740408 46742383 +
3 domain predictions
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LotjaGi4g1v0209000.1
n.a. Monocopper oxidase-like protein SKU5; TAIR: AT4G12420.1 Cupredoxin superfamily protein; Swiss-Prot: sp|Q9SU40|SKU5_ARATH Monocopper oxidase-like protein SKU5; TrEMBL-Plants: tr|I1MUX7|I1MUX7_SOYBN Uncharacterized protein; Found in the gene: LotjaGi4g1v0209000 LjG1.1_chr4 48585420 48592339 +
3 domain predictions
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LotjaGi4g1v0272800.1
n.a. Blue copper protein; TAIR: AT5G20230.1 blue-copper-binding protein; Swiss-Prot: sp|Q41001|BCP_PEA Blue copper protein; TrEMBL-Plants: tr|I3RZH2|I3RZH2_LOTJA Uncharacterized protein; Found in the gene: LotjaGi4g1v0272800 LjG1.1_chr4 64068147 64069679 +
3 domain predictions
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LotjaGi4g1v0272900.1
n.a. Blue copper protein; TAIR: AT2G26720.1 Cupredoxin superfamily protein; Swiss-Prot: sp|Q41001|BCP_PEA Blue copper protein; TrEMBL-Plants: tr|I3RZH2|I3RZH2_LOTJA Uncharacterized protein; Found in the gene: LotjaGi4g1v0272900 LjG1.1_chr4 64128941 64130712 -
3 domain predictions
 –