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| Field | Value |
|---|---|
| Gene ID | LotjaGi2g1v0262400 |
| Transcript ID | LotjaGi2g1v0262400.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Early nodulin-like protein; TAIR: AT2G27035.1 early nodulin-like protein 20; Swiss-Prot: sp|Q39131|LAML_ARATH Lamin-like protein; TrEMBL-Plants: tr|G7KLC9|G7KLC9_MEDTR Plastocyanin-like domain protein; Found in the gene: LotjaGi2g1v0262400 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr2:73135630..73138260) extracted from Lotus japonicus Gifu genome v1.2.
CCTTAAAGCACTACTGCTTCCAATTCACACTTTAGAGCAGCGTCATTCTCACGAGACACAGAGCTACATACAACTTTTCC AGATTGCTATAGCTTGATCATCACCTATTTATATCACCCACTTGTCCAAAAGATACTCACTGTGTGTGATCATTTGTTTT GGAAGAGAGAAAGAAAGAAATTAAAGTGATTATGGAAATTGGTTCCAGAATTGTACTTTTGGTGAGTGTTGTTATGGTGG TCATAGCTGCAGGGTTGTGGCCAATGGCGGCTGTGGAAGGAGGTCCAGTGCTTCATAAAGTGGGAGCCTCCAAAGGTTGG CATCAGGATATCAACTACACTCAGTGGTCTGCTCAAGAGCATTTCTACGTTGGTGATTGGCTCTGTAAGTGCATACAAAC TAATTAACCTCTTCTCTTTATGTTCATTTCATTCCTAGTTATTGTGAATATTCAAAATTAAAAGACTAATCGAGCTTACC ATTCTCAATTTTGATTTCACTTGTTGTCTTGCCATTGAGAATTAAACAATATGAATTAGAGGCAAAAAAAAAAAAATTAA TGAATTGAGTGAATGTATTTTCACTTTCTTCCAACCTAAATTCAAACACACATTCAGCGCTCAAAATAATTTTAGGGGTT GAACAAATGTATTTGCACCTAATACATATATATTAGCTACATTTTTTTAAACTGGGAATATCTAGAGTTTTTACTTTTGA GTTTTAACTTCTCTTGATCAAGTGTCCTGTGGCCATTAGAGGTCCTCAATGTTCTATGTTAAAAGATTGATGGTTCCAAG AGTAATTAAGTAAAATCAGTTTAATTTCAAACCTCATTTGTTAATTTCTTATACACAGATGGGGCTTCTATTGCTTCATT TCATCGTATACAAACTTAGTTATTGAGAATGTAGTTTTTGGTAGAGCGAGGAAGAACAACAAGAAATTCTGCTTTCATAT ACAAACAAATTATGACAAGTGGAATGTTATAATTCCAGCATTCCTACTCATATTTATAAAAGTGACAAGAAAAAGAAAAT ACGTACGGCACCCTTTTCCTTTTGGTTATTATGCACAATTTACATTATAAATCCTGATCCATACAGCAGATGATAACATG ATCAGTTTTAAATTGTGGTGATTAAGTTATGATTTTTAATACTAATTTGACCATATTACAATTGTGATATGGTTGCGGTG AGCTGAATAACCCTGGCGATGTTATCACAATTGCAGTTGCGGACCGCAATTTCAAAACTCTGAATCAAATTAGGGTACCT AAAATGTATTTTTCATTTAGTGAAAGTGTGAAACAGATTATTAGCCCCTAATGCCCTTGAAATTACGGTCATAATTGGTA GTATATAGTAAAAAGAAAAAAGTTAAAGGCACAGTCAAGAGAAGTACAAATATTATTATTACAACAGTAAAGAAAAAGAA AAAAGAATCTACCTTTCAATATTCACTAACCAAGAAGAGAAGCTTTAACTGTTGAAACTTGAAACAAAAGATCTGCACGA GTCACATGCACATTGAACAAACACCACTCTCAAATTGGAGACGAAATATTCGAACCTTCATATATAAAAGGAACTTTAAT TAGGATAATCATCTGGTTTATAAATTAACTTAACATAATGTCAAACTAACCTTAATCGTAACGAAACAAAAACAGAACAT TTTCGTAACATTATAACAATCTTAGTACTTTACTACCTTTTACATATGTATTACTGTGTTATTATATATGGTGGTCCATG GTTAATAAAATTAACTTTATTGGTTTGATCAAGTGTTCAAGTTTGACAAGCGATACTACAACGTTCTGGAAGTGAACAAG ACAAGCTACGAGAGCTGCATAGACTGGGCGTTCATCAGAAACATCACGCGCGGTGGTCGCGACGTGGTTCAGTTGACAGA GGCAAGGACATACTACTTCCTCTCTAGCGGAGGCTACTGCTTTCATGGAATGAGAGTTGCTGTGCAGGTTGAACAATACC AACAAGGTGCACCAGCAGGGGCACCATCTCCTTCTGAGATGAATCACTCTGGTTCTATTTTGCCTTCTGGGTTGTGCACC TACATTTGGATTGTTGTTGCTAATGTGCTTTATGTGAATTTGGTTTCATTGGGCATTTTGTAAGAGATGGGGCTGGGGCT GAGAAATTAAGACAACTTGGACTAGGTAAATTAAATTATTTCTAAGGATGCGTTATTTGAGTAAAAGGTGAGGACAGGTT CATTATTTGTTATGGTTGTTTTTTTCGTTTTAAGGGTTAGGTACTTGATGCTGTTTAGCCCATATTGGATGGCTTGGTTG GTTAGTGATGAATTAAAAATTTGATGGAAGATTATGTTTTCTTTTTGTGTCTCCATTTTTATGTGAATCTCAAATTTAAC TTAGACATTGACATTATGTGTTACCAACAAATTTTTAGTTCAAGTGGTACATATTTGATTCTTGTTAATAAGTAAGATCT TGAGTTCAAATTTCGTGAATGAAGAAAATCTCTATTAGAAGCAATGTTGTTGAGAACGTGATTCGGTTCGTAGGATTGTG CGATCTTGCGATCCGTTTGCGCATTTGTGATATGGATCACAAGTAGGATTGTGAATTGGAATGGATTGCTG
CDS sequence (LotjaGi2g1v0262400.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGAAATTGGTTCCAGAATTGTACTTTTGGTGAGTGTTGTTATGGTGGTCATAGCTGCAGGGTTGTGGCCAATGGCGGC TGTGGAAGGAGGTCCAGTGCTTCATAAAGTGGGAGCCTCCAAAGGTTGGCATCAGGATATCAACTACACTCAGTGGTCTG CTCAAGAGCATTTCTACGTTGGTGATTGGCTCTTGTTCAAGTTTGACAAGCGATACTACAACGTTCTGGAAGTGAACAAG ACAAGCTACGAGAGCTGCATAGACTGGGCGTTCATCAGAAACATCACGCGCGGTGGTCGCGACGTGGTTCAGTTGACAGA GGCAAGGACATACTACTTCCTCTCTAGCGGAGGCTACTGCTTTCATGGAATGAGAGTTGCTGTGCAGGTTGAACAATACC AACAAGGTGCACCAGCAGGGGCACCATCTCCTTCTGAGATGAATCACTCTGGTTCTATTTTGCCTTCTGGGTTGTGCACC TACATTTGGATTGTTGTTGCTAATGTGCTTTATGTGAATTTGGTTTCATTGGGCATTTTGTAA
Protein sequence (LotjaGi2g1v0262400.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MEIGSRIVLLVSVVMVVIAAGLWPMAAVEGGPVLHKVGASKGWHQDINYTQWSAQEHFYVGDWLLFKFDKRYYNVLEVNK TSYESCIDWAFIRNITRGGRDVVQLTEARTYYFLSSGGYCFHGMRVAVQVEQYQQGAPAGAPSPSEMNHSGSILPSGLCT YIWIVVANVLYVNLVSLGIL
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| SignalP_GRAM_POSITIVE | 1 | 27 | 27 | - | – | |
| Phobius | 1 | 6 | 6 | - | – | |
| SignalP_EUK | 1 | 30 | 30 | - | – | |
| Phobius | 7 | 26 | 20 | - | – | |
| TMHMM | 7 | 26 | 20 | - | – | |
| PANTHER | 11 | 175 | 165 | 4.7E-66 | – | |
| PANTHER | 11 | 175 | 165 | 4.7E-66 | ||
| Phobius | 27 | 152 | 126 | - | – | |
| ProSiteProfiles | 33 | 132 | 100 | 30.407 | ||
| Gene3D | 33 | 136 | 104 | 1.3E-25 | ||
| SUPERFAMILY | 34 | 130 | 97 | 1.36E-24 | ||
| Pfam | 44 | 124 | 81 | 1.1E-18 | ||
| TMHMM | 153 | 175 | 23 | - | – | |
| Phobius | 153 | 174 | 22 | - | – | |
| Phobius | 175 | 180 | 6 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Electron transfer activity | Any molecular entity that serves as an electron acceptor and electron donor in an electron transport chain. An electron transport chain is a process in which a series of electron carriers operate together to transfer electrons from donors to any of several different terminal electron acceptors to generate a transmembrane electrochemical gradient. |
Expression pattern of LotjaGi2g1v0262400.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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