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TREX

Transcript Explorer
for L. japonicus reference genomes

The Transcript Explorer tool can be used to search for candidate Lotus genes using user-defined keywords, or to comb a specific genomic interval—a combination of chromosome and position range—for genes/transcripts of interest.

Repeat Search

  • IPR013057
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We have found 242 results. Now displaying 3 of 5 with 50 rows per page. This search has taken 5.831s to perform.

Transcript Name Description Chr Start End Strand Domain predictions GO predictions
LotjaGi1g1v0079200.2
n.a. Auxin influx transporter; TAIR: AT2G38120.1 Transmembrane amino acid transporter family protein; Swiss-Prot: sp|Q9FEL8|LAX1_MEDTR Auxin transporter-like protein 1; TrEMBL-Plants: tr|G7KGX5|G7KGX5_MEDTR Auxin influx transporter; Found in the gene: LotjaGi1g1v0079200 LjG1.1_chr1 11419314 11425670 -
2 domain predictions
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LotjaGi1g1v0079200.3
n.a. Auxin influx transporter; TAIR: AT2G38120.1 Transmembrane amino acid transporter family protein; Swiss-Prot: sp|Q9FEL8|LAX1_MEDTR Auxin transporter-like protein 1; TrEMBL-Plants: tr|V7B7B9|V7B7B9_PHAVU Uncharacterized protein; Found in the gene: LotjaGi1g1v0079200 LjG1.1_chr1 11419314 11425729 -
2 domain predictions
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LotjaGi1g1v0079200.4
n.a. Auxin influx transporter; TAIR: AT2G38120.1 Transmembrane amino acid transporter family protein; Swiss-Prot: sp|Q9FEL8|LAX1_MEDTR Auxin transporter-like protein 1; TrEMBL-Plants: tr|V7B7B9|V7B7B9_PHAVU Uncharacterized protein; Found in the gene: LotjaGi1g1v0079200 LjG1.1_chr1 11419314 11425917 -
2 domain predictions
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LotjaGi1g1v0079200.5
n.a. Auxin influx transporter; TAIR: AT2G38120.1 Transmembrane amino acid transporter family protein; Swiss-Prot: sp|Q9FEL8|LAX1_MEDTR Auxin transporter-like protein 1; TrEMBL-Plants: tr|V7B7B9|V7B7B9_PHAVU Uncharacterized protein; Found in the gene: LotjaGi1g1v0079200 LjG1.1_chr1 11419320 11425718 -
2 domain predictions
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LotjaGi1g1v0079200.6
n.a. Auxin influx transporter; TAIR: AT2G38120.1 Transmembrane amino acid transporter family protein; Swiss-Prot: sp|Q9FEL8|LAX1_MEDTR Auxin transporter-like protein 1; TrEMBL-Plants: tr|G7KGX5|G7KGX5_MEDTR Auxin influx transporter; Found in the gene: LotjaGi1g1v0079200 LjG1.1_chr1 11419406 11421882 -
2 domain predictions
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LotjaGi1g1v0079200.7
n.a. Auxin influx transporter; TAIR: AT2G38120.1 Transmembrane amino acid transporter family protein; Swiss-Prot: sp|Q9FEL8|LAX1_MEDTR Auxin transporter-like protein 1; TrEMBL-Plants: tr|G7KGX5|G7KGX5_MEDTR Auxin influx transporter; Found in the gene: LotjaGi1g1v0079200 LjG1.1_chr1 11419406 11425381 -
2 domain predictions
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LotjaGi1g1v0079200.8
n.a. Auxin influx transporter; TAIR: AT2G38120.1 Transmembrane amino acid transporter family protein; Swiss-Prot: sp|Q9FEL8|LAX1_MEDTR Auxin transporter-like protein 1; TrEMBL-Plants: tr|G7KGX5|G7KGX5_MEDTR Auxin influx transporter; Found in the gene: LotjaGi1g1v0079200 LjG1.1_chr1 11419406 11425652 -
2 domain predictions
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LotjaGi1g1v0079200.9
n.a. Auxin influx transporter; TAIR: AT2G38120.1 Transmembrane amino acid transporter family protein; Swiss-Prot: sp|Q9FEL8|LAX1_MEDTR Auxin transporter-like protein 1; TrEMBL-Plants: tr|V7B7B9|V7B7B9_PHAVU Uncharacterized protein; Found in the gene: LotjaGi1g1v0079200 LjG1.1_chr1 11419406 11425718 -
2 domain predictions
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LotjaGi1g1v0082600.1
n.a. Proline transporter; TAIR: AT2G39890.1 proline transporter 1; Swiss-Prot: sp|P92961|PROT1_ARATH Proline transporter 1; TrEMBL-Plants: tr|G7KBU8|G7KBU8_MEDTR Transmembrane amino acid transporter family protein; Found in the gene: LotjaGi1g1v0082600 LjG1.1_chr1 11852408 11857498 -
2 domain predictions
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LotjaGi1g1v0082600.2
n.a. Proline transporter; TAIR: AT2G39890.1 proline transporter 1; Swiss-Prot: sp|P92961|PROT1_ARATH Proline transporter 1; TrEMBL-Plants: tr|G7KBU8|G7KBU8_MEDTR Transmembrane amino acid transporter family protein; Found in the gene: LotjaGi1g1v0082600 LjG1.1_chr1 11852621 11856549 -
2 domain predictions
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LotjaGi1g1v0199100.1
n.a. Amino acid transporter family protein; TAIR: AT2G41190.1 Transmembrane amino acid transporter family protein; Swiss-Prot: sp|P47082|AVT1_YEAST Vacuolar amino acid transporter 1; TrEMBL-Plants: tr|A0A0B2RTR3|A0A0B2RTR3_GLYSO Vacuolar amino acid transporter 1; Found in the gene: LotjaGi1g1v0199100 LjG1.1_chr1 42147714 42155083 -
2 domain predictions
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LotjaGi1g1v0223200.1
n.a. Amino acid permease; TAIR: AT1G58360.1 amino acid permease 1; Swiss-Prot: sp|Q42400|AAP1_ARATH Amino acid permease 1; TrEMBL-Plants: tr|G7I273|G7I273_MEDTR Transmembrane amino acid transporter family protein; Found in the gene: LotjaGi1g1v0223200 LjG1.1_chr1 50390342 50467735 +
2 domain predictions
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LotjaGi1g1v0238300.1
n.a. Amino acid permease; TAIR: AT1G10010.1 amino acid permease 8; Swiss-Prot: sp|O80592|AAP8_ARATH Amino acid permease 8; TrEMBL-Plants: tr|A0A072V646|A0A072V646_MEDTR Transmembrane amino acid transporter family protein; Found in the gene: LotjaGi1g1v0238300 LjG1.1_chr1 56804251 56811564 -
2 domain predictions
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LotjaGi1g1v0255500.1
n.a. Auxin influx transporter; TAIR: AT1G77690.1 like AUX1 3; Swiss-Prot: sp|Q9FEL6|LAX3_MEDTR Auxin transporter-like protein 3; TrEMBL-Plants: tr|I3STH3|I3STH3_LOTJA Uncharacterized protein; Found in the gene: LotjaGi1g1v0255500 LjG1.1_chr1 61669416 61673413 +
2 domain predictions
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LotjaGi1g1v0255500.2
n.a. Auxin influx transporter; TAIR: AT1G77690.1 like AUX1 3; Swiss-Prot: sp|Q9FEL6|LAX3_MEDTR Auxin transporter-like protein 3; TrEMBL-Plants: tr|I3STH3|I3STH3_LOTJA Uncharacterized protein; Found in the gene: LotjaGi1g1v0255500 LjG1.1_chr1 61669872 61673187 +
2 domain predictions
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LotjaGi1g1v0255500.3
n.a. Auxin influx transporter; TAIR: AT1G77690.1 like AUX1 3; Swiss-Prot: sp|Q9FEL6|LAX3_MEDTR Auxin transporter-like protein 3; TrEMBL-Plants: tr|I3STH3|I3STH3_LOTJA Uncharacterized protein; Found in the gene: LotjaGi1g1v0255500 LjG1.1_chr1 61669872 61673202 +
2 domain predictions
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LotjaGi1g1v0255500.4
n.a. Auxin influx transporter; TAIR: AT1G77690.1 like AUX1 3; Swiss-Prot: sp|Q9FEL6|LAX3_MEDTR Auxin transporter-like protein 3; TrEMBL-Plants: tr|I3STH3|I3STH3_LOTJA Uncharacterized protein; Found in the gene: LotjaGi1g1v0255500 LjG1.1_chr1 61669878 61672956 +
2 domain predictions
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LotjaGi1g1v0255500.5
n.a. Auxin transporter-like protein 2; TAIR: AT1G77690.1 like AUX1 3; Swiss-Prot: sp|Q9FEL6|LAX3_MEDTR Auxin transporter-like protein 3; TrEMBL-Plants: tr|A0A0B2QJB2|A0A0B2QJB2_GLYSO Auxin transporter-like protein 5; Found in the gene: LotjaGi1g1v0255500 LjG1.1_chr1 61669878 61672972 +
2 domain predictions
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LotjaGi1g1v0255500.6
n.a. Auxin influx transporter; TAIR: AT1G77690.1 like AUX1 3; Swiss-Prot: sp|Q9FEL6|LAX3_MEDTR Auxin transporter-like protein 3; TrEMBL-Plants: tr|I3STH3|I3STH3_LOTJA Uncharacterized protein; Found in the gene: LotjaGi1g1v0255500 LjG1.1_chr1 61669878 61673140 +
2 domain predictions
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LotjaGi1g1v0255500.7
n.a. Auxin influx transporter; TAIR: AT2G21050.1 like AUXIN RESISTANT 2; Swiss-Prot: sp|Q9FEL6|LAX3_MEDTR Auxin transporter-like protein 3; TrEMBL-Plants: tr|I3STH3|I3STH3_LOTJA Uncharacterized protein; Found in the gene: LotjaGi1g1v0255500 LjG1.1_chr1 61670186 61673140 +
2 domain predictions
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LotjaGi1g1v0265200.1
n.a. Amino acid permease; TAIR: AT1G77380.1 amino acid permease 3; Swiss-Prot: sp|Q39134|AAP3_ARATH Amino acid permease 3; TrEMBL-Plants: tr|A0A1J7H324|A0A1J7H324_LUPAN Uncharacterized protein; Found in the gene: LotjaGi1g1v0265200 LjG1.1_chr1 64813858 64819993 +
2 domain predictions
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LotjaGi1g1v0323100.1
n.a. Amino acid permease; TAIR: AT5G09220.1 amino acid permease 2; Swiss-Prot: sp|Q38967|AAP2_ARATH Amino acid permease 2; TrEMBL-Plants: tr|I1JXY4|I1JXY4_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0323100 LjG1.1_chr1 77476223 77480194 -
2 domain predictions
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LotjaGi1g1v0323200.1
n.a. Amino acid permease; TAIR: AT5G09220.1 amino acid permease 2; Swiss-Prot: sp|Q38967|AAP2_ARATH Amino acid permease 2; TrEMBL-Plants: tr|A0A0B2PKH5|A0A0B2PKH5_GLYSO Amino acid permease 2; Found in the gene: LotjaGi1g1v0323200 LjG1.1_chr1 77492205 77495595 -
2 domain predictions
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LotjaGi1g1v0323300.1
n.a. Amino acid permease; TAIR: AT5G09220.1 amino acid permease 2; Swiss-Prot: sp|Q38967|AAP2_ARATH Amino acid permease 2; TrEMBL-Plants: tr|Q56H85|Q56H85_PEA Amino acid transporter; Found in the gene: LotjaGi1g1v0323300 LjG1.1_chr1 77518952 77525053 -
2 domain predictions
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LotjaGi1g1v0323300.2
n.a. Amino acid permease; TAIR: AT5G09220.1 amino acid permease 2; Swiss-Prot: sp|Q38967|AAP2_ARATH Amino acid permease 2; TrEMBL-Plants: tr|Q56H85|Q56H85_PEA Amino acid transporter; Found in the gene: LotjaGi1g1v0323300 LjG1.1_chr1 77519237 77522824 -
2 domain predictions
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LotjaGi1g1v0323400.1
n.a. Amino acid permease; TAIR: AT5G09220.1 amino acid permease 2; Swiss-Prot: sp|Q38967|AAP2_ARATH Amino acid permease 2; TrEMBL-Plants: tr|Q93X14|Q93X14_VICFA Amino acid permease AAP3; Found in the gene: LotjaGi1g1v0323400 LjG1.1_chr1 77525221 77532666 -
2 domain predictions
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LotjaGi1g1v0323400.2
n.a. Amino acid permease; TAIR: AT5G09220.1 amino acid permease 2; Swiss-Prot: sp|Q38967|AAP2_ARATH Amino acid permease 2; TrEMBL-Plants: tr|Q93X14|Q93X14_VICFA Amino acid permease AAP3; Found in the gene: LotjaGi1g1v0323400 LjG1.1_chr1 77525376 77532666 -
2 domain predictions
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LotjaGi1g1v0323400.3
n.a. Amino acid permease; TAIR: AT5G09220.1 amino acid permease 2; Swiss-Prot: sp|Q38967|AAP2_ARATH Amino acid permease 2; TrEMBL-Plants: tr|Q93X14|Q93X14_VICFA Amino acid permease AAP3; Found in the gene: LotjaGi1g1v0323400 LjG1.1_chr1 77525385 77530293 -
2 domain predictions
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LotjaGi1g1v0409400.1
n.a. Amino acid permease; TAIR: AT1G10010.1 amino acid permease 8; Swiss-Prot: sp|O80592|AAP8_ARATH Amino acid permease 8; TrEMBL-Plants: tr|I3SXW3|I3SXW3_LOTJA Uncharacterized protein; Found in the gene: LotjaGi1g1v0409400 LjG1.1_chr1 89985099 89990251 +
2 domain predictions
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LotjaGi1g1v0409400.2
n.a. Amino acid permease; TAIR: AT1G10010.1 amino acid permease 8; Swiss-Prot: sp|O80592|AAP8_ARATH Amino acid permease 8; TrEMBL-Plants: tr|I3SXW3|I3SXW3_LOTJA Uncharacterized protein; Found in the gene: LotjaGi1g1v0409400 LjG1.1_chr1 89985252 89990072 +
2 domain predictions
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LotjaGi1g1v0409500.1
n.a. Amino acid permease; TAIR: AT1G10010.1 amino acid permease 8; Swiss-Prot: sp|O80592|AAP8_ARATH Amino acid permease 8; TrEMBL-Plants: tr|G7J3I7|G7J3I7_MEDTR Transmembrane amino acid transporter family protein; Found in the gene: LotjaGi1g1v0409500 LjG1.1_chr1 89997354 90003653 +
2 domain predictions
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LotjaGi1g1v0411300.1
n.a. Amino acid permease; TAIR: AT5G49630.1 amino acid permease 6; Swiss-Prot: sp|P92934|AAP6_ARATH Amino acid permease 6; TrEMBL-Plants: tr|A0A0R0KCW6|A0A0R0KCW6_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0411300 LjG1.1_chr1 90188691 90194065 -
2 domain predictions
 –
LotjaGi1g1v0411300.2
n.a. Amino acid permease; TAIR: AT5G49630.1 amino acid permease 6; Swiss-Prot: sp|P92934|AAP6_ARATH Amino acid permease 6; TrEMBL-Plants: tr|I3T2E5|I3T2E5_LOTJA Uncharacterized protein; Found in the gene: LotjaGi1g1v0411300 LjG1.1_chr1 90189000 90189807 -
2 domain predictions
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LotjaGi1g1v0411300.3
n.a. Amino acid permease; TAIR: AT5G49630.1 amino acid permease 6; Swiss-Prot: sp|P92934|AAP6_ARATH Amino acid permease 6; TrEMBL-Plants: tr|A0A0R0KCW6|A0A0R0KCW6_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0411300 LjG1.1_chr1 90189000 90192493 -
2 domain predictions
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LotjaGi1g1v0434200.1
n.a. Lysine/histidine transporter; TAIR: AT1G47670.1 Transmembrane amino acid transporter family protein; Swiss-Prot: sp|Q9SX98|LHTL8_ARATH Lysine histidine transporter-like 8; TrEMBL-Plants: tr|A0A072V4K9|A0A072V4K9_MEDTR Transmembrane amino acid transporter family protein; Found in the gene: LotjaGi1g1v0434200 LjG1.1_chr1 92867276 92873854 -
2 domain predictions
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LotjaGi1g1v0438800.1
n.a. Auxin transporter-like protein 2; TAIR: AT2G38120.1 Transmembrane amino acid transporter family protein; Swiss-Prot: sp|Q9FEL7|LAX2_MEDTR Auxin transporter-like protein 2; TrEMBL-Plants: tr|I1N2V5|I1N2V5_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0438800 LjG1.1_chr1 93402502 93408989 +
2 domain predictions
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LotjaGi1g1v0438800.2
n.a. Auxin transporter-like protein 2; TAIR: AT2G38120.1 Transmembrane amino acid transporter family protein; Swiss-Prot: sp|Q9FEL7|LAX2_MEDTR Auxin transporter-like protein 2; TrEMBL-Plants: tr|I1N2V5|I1N2V5_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0438800 LjG1.1_chr1 93403638 93408472 +
2 domain predictions
 –
LotjaGi1g1v0438800.3
n.a. Auxin transporter-like protein 2; TAIR: AT2G38120.1 Transmembrane amino acid transporter family protein; Swiss-Prot: sp|Q9FEL7|LAX2_MEDTR Auxin transporter-like protein 2; TrEMBL-Plants: tr|A0A0L9U587|A0A0L9U587_PHAAN Uncharacterized protein; Found in the gene: LotjaGi1g1v0438800 LjG1.1_chr1 93403684 93408472 +
2 domain predictions
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LotjaGi1g1v0438800.4
n.a. Auxin transporter-like protein 2; TAIR: AT2G38120.1 Transmembrane amino acid transporter family protein; Swiss-Prot: sp|Q9FEL7|LAX2_MEDTR Auxin transporter-like protein 2; TrEMBL-Plants: tr|I1N2V5|I1N2V5_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0438800 LjG1.1_chr1 93403684 93408525 +
2 domain predictions
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LotjaGi1g1v0503300.1
n.a. Amino acid transporter, putative; TAIR: AT3G28960.1 Transmembrane amino acid transporter family protein; Swiss-Prot: sp|P47082|AVT1_YEAST Vacuolar amino acid transporter 1; TrEMBL-Plants: tr|I1L5X6|I1L5X6_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0503300 LjG1.1_chr1 102098848 102106743 +
2 domain predictions
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LotjaGi1g1v0503300.2
n.a. Amino acid transporter, putative; TAIR: AT3G28960.1 Transmembrane amino acid transporter family protein; Swiss-Prot: sp|P47082|AVT1_YEAST Vacuolar amino acid transporter 1; TrEMBL-Plants: tr|I1L5X6|I1L5X6_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0503300 LjG1.1_chr1 102101413 102116212 +
2 domain predictions
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LotjaGi1g1v0503300.3
n.a. Amino acid transporter, putative; TAIR: AT3G28960.1 Transmembrane amino acid transporter family protein; Swiss-Prot: sp|P47082|AVT1_YEAST Vacuolar amino acid transporter 1; TrEMBL-Plants: tr|Q2HUT2|Q2HUT2_MEDTR Amino acid/polyamine transporter II; Found in the gene: LotjaGi1g1v0503300 LjG1.1_chr1 102104254 102107836 +
2 domain predictions
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LotjaGi1g1v0503300.4
n.a. Amino acid transporter, putative; TAIR: AT3G28960.1 Transmembrane amino acid transporter family protein; Swiss-Prot: sp|P47082|AVT1_YEAST Vacuolar amino acid transporter 1; TrEMBL-Plants: tr|I1L5X6|I1L5X6_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0503300 LjG1.1_chr1 102104926 102106561 +
2 domain predictions
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LotjaGi1g1v0503300.5
n.a. Amino acid transporter, putative; TAIR: AT3G28960.1 Transmembrane amino acid transporter family protein; Swiss-Prot: sp|P47082|AVT1_YEAST Vacuolar amino acid transporter 1; TrEMBL-Plants: tr|I1L5X6|I1L5X6_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0503300 LjG1.1_chr1 102105033 102106561 +
2 domain predictions
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LotjaGi1g1v0503400.1
n.a. Amino acid transporter, putative; TAIR: AT3G28960.1 Transmembrane amino acid transporter family protein; Swiss-Prot: sp|P47082|AVT1_YEAST Vacuolar amino acid transporter 1; TrEMBL-Plants: tr|I3SR98|I3SR98_LOTJA Uncharacterized protein; Found in the gene: LotjaGi1g1v0503400 LjG1.1_chr1 102119695 102122453 +
2 domain predictions
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LotjaGi1g1v0503500.1
n.a. Amino acid transporter family protein; TAIR: AT3G28960.4 Transmembrane amino acid transporter family protein; Swiss-Prot: sp|P47082|AVT1_YEAST Vacuolar amino acid transporter 1; TrEMBL-Plants: tr|I1L5X6|I1L5X6_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0503500 LjG1.1_chr1 102127272 102128701 +
2 domain predictions
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LotjaGi1g1v0522000.1
n.a. Amino acid transporter, putative; TAIR: AT3G30390.1 Transmembrane amino acid transporter family protein; Swiss-Prot: sp|Q9DCP2|S38A3_MOUSE Sodium-coupled neutral amino acid transporter 3; TrEMBL-Plants: tr|V7B0N0|V7B0N0_PHAVU Uncharacterized protein; Found in the gene: LotjaGi1g1v0522000 LjG1.1_chr1 104633240 104637720 -
2 domain predictions
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LotjaGi1g1v0522000.2
n.a. Amino acid transporter, putative; TAIR: AT3G30390.1 Transmembrane amino acid transporter family protein; Swiss-Prot: sp|Q9DCP2|S38A3_MOUSE Sodium-coupled neutral amino acid transporter 3; TrEMBL-Plants: tr|V7B0N0|V7B0N0_PHAVU Uncharacterized protein; Found in the gene: LotjaGi1g1v0522000 LjG1.1_chr1 104633956 104637075 -
2 domain predictions
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LotjaGi1g1v0619300.1
n.a. Amino acid transporter, putative; TAIR: AT5G40780.1 lysine histidine transporter 1; Swiss-Prot: sp|Q9FKS8|LHT1_ARATH Lysine histidine transporter 1; TrEMBL-Plants: tr|I1N7L1|I1N7L1_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0619300 LjG1.1_chr1 116628280 116635470 +
2 domain predictions
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LotjaGi1g1v0619300.2
n.a. Amino acid transporter, putative; TAIR: AT5G40780.1 lysine histidine transporter 1; Swiss-Prot: sp|Q9FKS8|LHT1_ARATH Lysine histidine transporter 1; TrEMBL-Plants: tr|I1N7L1|I1N7L1_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0619300 LjG1.1_chr1 116630926 116633490 +
2 domain predictions
 –