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TREX

Transcript Explorer
for L. japonicus reference genomes

The Transcript Explorer tool can be used to search for candidate Lotus genes using user-defined keywords, or to comb a specific genomic interval—a combination of chromosome and position range—for genes/transcripts of interest.

Repeat Search

  • IPR013201
Separate each keyword, or gene/transcript ID, with a comma or tab. Spaces are not accepted as delimiters due to their potential use in boolean searches.
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Download the entire search result as a CSV file.

We have found 132 results. Now displaying 3 of 3 with 50 rows per page. This search has taken 5.457s to perform.

Transcript Name Description Chr Start End Strand Domain predictions GO predictions
LotjaGi4g1v0215600_LC.2
n.a. Cysteine protease, putative; TAIR: AT1G09850.1 xylem bark cysteine peptidase 3; Swiss-Prot: sp|A2XQE8|SAG39_ORYSI Senescence-specific cysteine protease SAG39; TrEMBL-Plants: tr|I3T5N5|I3T5N5_LOTJA Uncharacterized protein; Found in the gene: LotjaGi4g1v0215600_LC LjG1.1_chr4 50445465 50450395 -
2 domain predictions
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LotjaGi4g1v0215600_LC.3
n.a. Cysteine protease, putative; TAIR: AT1G09850.1 xylem bark cysteine peptidase 3; Swiss-Prot: sp|P25778|ORYC_ORYSJ Oryzain gamma chain; TrEMBL-Plants: tr|I3T5N5|I3T5N5_LOTJA Uncharacterized protein; Found in the gene: LotjaGi4g1v0215600_LC LjG1.1_chr4 50445465 50450395 -
3 domain predictions
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LotjaGi4g1v0215600_LC.4
n.a. Cysteine protease, putative; TAIR: AT1G09850.1 xylem bark cysteine peptidase 3; Swiss-Prot: sp|P25778|ORYC_ORYSJ Oryzain gamma chain; TrEMBL-Plants: tr|I3T5N5|I3T5N5_LOTJA Uncharacterized protein; Found in the gene: LotjaGi4g1v0215600_LC LjG1.1_chr4 50445465 50450395 -
3 domain predictions
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LotjaGi4g1v0215600_LC.5
n.a. Cysteine protease, putative; TAIR: AT1G09850.1 xylem bark cysteine peptidase 3; Swiss-Prot: sp|F4JNL3|RDL6_ARATH Probable cysteine protease RDL6; TrEMBL-Plants: tr|I3T5N5|I3T5N5_LOTJA Uncharacterized protein; Found in the gene: LotjaGi4g1v0215600_LC LjG1.1_chr4 50445465 50450395 -
2 domain predictions
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LotjaGi4g1v0215600_LC.6
n.a. Cysteine protease, putative; TAIR: AT1G09850.1 xylem bark cysteine peptidase 3; Swiss-Prot: sp|P25778|ORYC_ORYSJ Oryzain gamma chain; TrEMBL-Plants: tr|I3T5N5|I3T5N5_LOTJA Uncharacterized protein; Found in the gene: LotjaGi4g1v0215600_LC LjG1.1_chr4 50445465 50450395 -
3 domain predictions
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LotjaGi4g1v0215600_LC.7
n.a. Cysteine protease, putative; TAIR: AT1G09850.1 xylem bark cysteine peptidase 3; Swiss-Prot: sp|P25778|ORYC_ORYSJ Oryzain gamma chain; TrEMBL-Plants: tr|I3T5N5|I3T5N5_LOTJA Uncharacterized protein; Found in the gene: LotjaGi4g1v0215600_LC LjG1.1_chr4 50445465 50450395 -
3 domain predictions
 –
LotjaGi4g1v0215600_LC.8
n.a. Cysteine protease, putative; TAIR: AT1G09850.1 xylem bark cysteine peptidase 3; Swiss-Prot: sp|P25778|ORYC_ORYSJ Oryzain gamma chain; TrEMBL-Plants: tr|I3T5N5|I3T5N5_LOTJA Uncharacterized protein; Found in the gene: LotjaGi4g1v0215600_LC LjG1.1_chr4 50445465 50450395 -
3 domain predictions
 –
LotjaGi4g1v0215600_LC.9
n.a. Cysteine protease, putative; TAIR: AT1G09850.1 xylem bark cysteine peptidase 3; Swiss-Prot: sp|P25778|ORYC_ORYSJ Oryzain gamma chain; TrEMBL-Plants: tr|I3T5N5|I3T5N5_LOTJA Uncharacterized protein; Found in the gene: LotjaGi4g1v0215600_LC LjG1.1_chr4 50445465 50470900 -
2 domain predictions
 –
LotjaGi4g1v0215700_LC.1
n.a. Cysteine protease, putative; TAIR: AT1G09850.1 xylem bark cysteine peptidase 3; Swiss-Prot: sp|P25778|ORYC_ORYSJ Oryzain gamma chain; TrEMBL-Plants: tr|I3T5N5|I3T5N5_LOTJA Uncharacterized protein; Found in the gene: LotjaGi4g1v0215700_LC LjG1.1_chr4 50475983 50479938 -
3 domain predictions
 –
LotjaGi4g1v0215700_LC.2
n.a. Cysteine protease, putative; TAIR: AT1G09850.1 xylem bark cysteine peptidase 3; Swiss-Prot: sp|A2XQE8|SAG39_ORYSI Senescence-specific cysteine protease SAG39; TrEMBL-Plants: tr|I3T5N5|I3T5N5_LOTJA Uncharacterized protein; Found in the gene: LotjaGi4g1v0215700_LC LjG1.1_chr4 50475983 50479938 -
2 domain predictions
 –
LotjaGi4g1v0215700_LC.3
n.a. Cysteine protease, putative; TAIR: AT1G09850.1 xylem bark cysteine peptidase 3; Swiss-Prot: sp|A2XQE8|SAG39_ORYSI Senescence-specific cysteine protease SAG39; TrEMBL-Plants: tr|I3T5N5|I3T5N5_LOTJA Uncharacterized protein; Found in the gene: LotjaGi4g1v0215700_LC LjG1.1_chr4 50475983 50479938 -
2 domain predictions
 –
LotjaGi4g1v0215700_LC.4
n.a. Cysteine protease, putative; TAIR: AT1G09850.1 xylem bark cysteine peptidase 3; Swiss-Prot: sp|A2XQE8|SAG39_ORYSI Senescence-specific cysteine protease SAG39; TrEMBL-Plants: tr|I3T5N5|I3T5N5_LOTJA Uncharacterized protein; Found in the gene: LotjaGi4g1v0215700_LC LjG1.1_chr4 50475983 50479938 -
2 domain predictions
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LotjaGi4g1v0215700_LC.5
n.a. Cysteine protease, putative; TAIR: AT1G09850.1 xylem bark cysteine peptidase 3; Swiss-Prot: sp|A2XQE8|SAG39_ORYSI Senescence-specific cysteine protease SAG39; TrEMBL-Plants: tr|I3T5N5|I3T5N5_LOTJA Uncharacterized protein; Found in the gene: LotjaGi4g1v0215700_LC LjG1.1_chr4 50476517 50479108 -
2 domain predictions
 –
LotjaGi4g1v0215700_LC.6
n.a. Cysteine protease, putative; TAIR: AT1G09850.1 xylem bark cysteine peptidase 3; Swiss-Prot: sp|P25778|ORYC_ORYSJ Oryzain gamma chain; TrEMBL-Plants: tr|I3T5N5|I3T5N5_LOTJA Uncharacterized protein; Found in the gene: LotjaGi4g1v0215700_LC LjG1.1_chr4 50476517 50479108 -
3 domain predictions
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LotjaGi4g1v0226000.1
n.a. Cysteine proteinase; TAIR: AT5G50260.1 Cysteine proteinases superfamily protein; Swiss-Prot: sp|P25803|CYSEP_PHAVU Vignain; TrEMBL-Plants: tr|I1MUK9|I1MUK9_SOYBN Uncharacterized protein; Found in the gene: LotjaGi4g1v0226000 LjG1.1_chr4 53528851 53531033 -
3 domain predictions
 –
LotjaGi4g1v0226100.1
n.a. Cysteine protease, putative; TAIR: AT5G50260.1 Cysteine proteinases superfamily protein; Swiss-Prot: sp|P25803|CYSEP_PHAVU Vignain; TrEMBL-Plants: tr|A0A072UQV2|A0A072UQV2_MEDTR KDEL-tailed cysteine endopeptidase CEP1; Found in the gene: LotjaGi4g1v0226100 LjG1.1_chr4 53533480 53535830 -
3 domain predictions
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LotjaGi4g1v0263400_LC.3
n.a. Cysteine protease; TAIR: AT4G11320.1 Papain family cysteine protease; Swiss-Prot: sp|A5HII1|ACTN_ACTDE Actinidain; TrEMBL-Plants: tr|I3SNI8|I3SNI8_LOTJA Uncharacterized protein; Found in the gene: LotjaGi4g1v0263400_LC LjG1.1_chr4 62634862 62647799 -
3 domain predictions
 –
LotjaGi4g1v0263400_LC.6
n.a. Cysteine protease; TAIR: AT4G11320.1 Papain family cysteine protease; Swiss-Prot: sp|A5HII1|ACTN_ACTDE Actinidain; TrEMBL-Plants: tr|I3SNI8|I3SNI8_LOTJA Uncharacterized protein; Found in the gene: LotjaGi4g1v0263400_LC LjG1.1_chr4 62635792 62643098 -
3 domain predictions
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LotjaGi4g1v0324600.1
n.a. Cysteine protease; TAIR: AT3G45310.1 Cysteine proteinases superfamily protein; Swiss-Prot: sp|Q8RWQ9|ALEUL_ARATH Thiol protease aleurain-like; TrEMBL-Plants: tr|I3SZ47|I3SZ47_LOTJA Uncharacterized protein; Found in the gene: LotjaGi4g1v0324600 LjG1.1_chr4 70297558 70301017 +
3 domain predictions
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LotjaGi4g1v0385800_LC.1
n.a. Papain family cysteine protease; TAIR: AT1G09850.1 xylem bark cysteine peptidase 3; Swiss-Prot: sp|Q7XWK5|SAG39_ORYSJ Senescence-specific cysteine protease SAG39; TrEMBL-Plants: tr|I3SHU8|I3SHU8_LOTJA Uncharacterized protein; Found in the gene: LotjaGi4g1v0385800_LC LjG1.1_chr4 76403669 76405792 +
2 domain predictions
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LotjaGi4g1v0385800_LC.2
n.a. Papain family cysteine protease; TAIR: AT1G09850.1 xylem bark cysteine peptidase 3; Swiss-Prot: sp|Q7XWK5|SAG39_ORYSJ Senescence-specific cysteine protease SAG39; TrEMBL-Plants: tr|I3SHU8|I3SHU8_LOTJA Uncharacterized protein; Found in the gene: LotjaGi4g1v0385800_LC LjG1.1_chr4 76403677 76405144 +
2 domain predictions
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LotjaGi5g1v0010700.2
n.a. Cysteine proteinase; TAIR: AT4G39090.1 Papain family cysteine protease; Swiss-Prot: sp|P25804|CYSP_PEA Cysteine proteinase 15A; TrEMBL-Plants: tr|I1MC68|I1MC68_SOYBN Uncharacterized protein; Found in the gene: LotjaGi5g1v0010700 LjG1.1_chr5 2520218 2523722 -
3 domain predictions
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LotjaGi5g1v0030300.1
n.a. Cysteine proteinase; TAIR: AT1G47128.1 Granulin repeat cysteine protease family protein; Swiss-Prot: sp|P43297|RD21A_ARATH Cysteine proteinase RD21A; TrEMBL-Plants: tr|A0A1J7IKX0|A0A1J7IKX0_LUPAN Uncharacterized protein; Found in the gene: LotjaGi5g1v0030300 LjG1.1_chr5 4905234 4911357 +
3 domain predictions
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LotjaGi5g1v0133700_LC.1
n.a. Cysteine protease, putative; TAIR: AT2G27420.1 Cysteine proteinases superfamily protein; Swiss-Prot: sp|P00784|PAPA1_CARPA Papain; TrEMBL-Plants: tr|I3RZU2|I3RZU2_LOTJA Uncharacterized protein; Found in the gene: LotjaGi5g1v0133700_LC LjG1.1_chr5 31428073 31429253 +
3 domain predictions
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LotjaGi5g1v0145100_LC.1
n.a. Cysteine protease, putative; TAIR: AT2G27420.1 Cysteine proteinases superfamily protein; Swiss-Prot: sp|P00784|PAPA1_CARPA Papain; TrEMBL-Plants: tr|I3RZU2|I3RZU2_LOTJA Uncharacterized protein; Found in the gene: LotjaGi5g1v0145100_LC LjG1.1_chr5 36738390 36739946 +
3 domain predictions
 –
LotjaGi5g1v0269900.1
n.a. Cysteine proteinase; TAIR: AT3G54940.2 Papain family cysteine protease; Swiss-Prot: sp|Q8VYS0|RD19D_ARATH Probable cysteine protease RD19D; TrEMBL-Plants: tr|A0A072VPA6|A0A072VPA6_MEDTR Papain family cysteine protease; Found in the gene: LotjaGi5g1v0269900 LjG1.1_chr5 58317188 58320331 +
3 domain predictions
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LotjaGi5g1v0329500.1
n.a. Cysteine protease, putative; TAIR: AT5G43060.1 Granulin repeat cysteine protease family protein; Swiss-Prot: sp|Q9FMH8|RD21B_ARATH Probable cysteine protease RD21B; TrEMBL-Plants: tr|A0A1J7HJC8|A0A1J7HJC8_LUPAN Uncharacterized protein; Found in the gene: LotjaGi5g1v0329500 LjG1.1_chr5 64662993 64665931 -
3 domain predictions
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LotjaGi6g1v0168000_LC.1
n.a. Cysteine proteinase; TAIR: AT1G09850.1 xylem bark cysteine peptidase 3; Swiss-Prot: sp|P14080|PAPA2_CARPA Chymopapain; TrEMBL-Plants: tr|I3RZU2|I3RZU2_LOTJA Uncharacterized protein; Found in the gene: LotjaGi6g1v0168000_LC LjG1.1_chr6 45344728 45345969 -
3 domain predictions
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LotjaGi6g1v0322400.1
n.a. Cysteine protease; TAIR: AT1G09850.1 xylem bark cysteine peptidase 3; Swiss-Prot: sp|P25776|ORYA_ORYSJ Oryzain alpha chain; TrEMBL-Plants: tr|A0A151S6D2|A0A151S6D2_CAJCA Cysteine proteinase RD21a; Found in the gene: LotjaGi6g1v0322400 LjG1.1_chr6 63846364 63849259 -
3 domain predictions
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LotjaGi6g1v0323700.1
n.a. Cysteine protease; TAIR: AT1G20850.1 xylem cysteine peptidase 2; Swiss-Prot: sp|P22895|P34_SOYBN P34 probable thiol protease; TrEMBL-Plants: tr|G7ILJ3|G7ILJ3_MEDTR Papain family cysteine protease; Found in the gene: LotjaGi6g1v0323700 LjG1.1_chr6 63939432 63941359 -
3 domain predictions
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LotjaGi6g1v0324000.1
n.a. Cysteine protease; TAIR: AT3G49340.1 Cysteine proteinases superfamily protein; Swiss-Prot: sp|Q9FJ47|SAG12_ARATH Senescence-specific cysteine protease SAG12; TrEMBL-Plants: tr|I3S8V9|I3S8V9_LOTJA Uncharacterized protein; Found in the gene: LotjaGi6g1v0324000 LjG1.1_chr6 63963221 63965455 -
3 domain predictions
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LotjaGi6g1v0324100.1
n.a. Cysteine protease; TAIR: AT2G34080.1 Cysteine proteinases superfamily protein; Swiss-Prot: sp|Q9FJ47|SAG12_ARATH Senescence-specific cysteine protease SAG12; TrEMBL-Plants: tr|I3S8V9|I3S8V9_LOTJA Uncharacterized protein; Found in the gene: LotjaGi6g1v0324100 LjG1.1_chr6 63966317 63968411 -
3 domain predictions
 –