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| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0226100 |
| Transcript ID | LotjaGi4g1v0226100.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Cysteine protease, putative; TAIR: AT5G50260.1 Cysteine proteinases superfamily protein; Swiss-Prot: sp|P25803|CYSEP_PHAVU Vignain; TrEMBL-Plants: tr|A0A072UQV2|A0A072UQV2_MEDTR KDEL-tailed cysteine endopeptidase CEP1; Found in the gene: LotjaGi4g1v0226100 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:53533480..53535830) extracted from Lotus japonicus Gifu genome v1.2.
CGAAAGTGCAACAACTTTGGTCTATGTTCTTCATCATTATTGATTGTTGATGCCTATTTGGAACTTCTTCATTTATTCAA TTATTTCCCATTGTTTTCTTCCTCCCTAGTGGCTTTTCATTTCTCTATATAAACCACTCACATGCTTTCTATTCTCACCA CCATCCATTGAGTTGATCATAACCAACTAGCAAAACAACATGGGAATGAAGAACCTCTTCTGTGTTGCTCTGTTTTCCCT TGCTCTGTTTCTCAGTGTTGCAGAGAGCTTTGATTACCATGAGAAAGATTTGGCCTCCGAGGAAGGCTTGTGGGATTTGT ATGAAAGATGGAGAAGCCACCACACGGTTTCTCGAAGCCTCGACGAGAAGCACAAGCGCTTCAATGTGTTCAAAGCCAAT GTGATGCATGTCCATGAAACCAACAAATTGGACAAGCCTTACAAGCTCAAGTTGAACAAGTTTGCTGACTTGACCAACTA TGAATTCAAAAGCATCTATGCTTCCTCAAAGATTGATCATCACAGAATGTTCCATGGAATTCCACGAGGGAATGGAAGCT TCATGTATGAGAATGTTGATAGTGTTCCCATTTCCAAAGATTGGAGGACGAGTGGTGCTGTCACTCCGGTAAAGGATCAA GGCCAATGTGGTAAGAAACATAATAATCACTATTACCATTCAAGTAGTTCATTTTGTCCTTTTAGCTAACTTATTTCTTA GCATAATTGGATTAGCAATGGACACACAATTCAAAGCACAGTAATCCCAAAAGTTACACTTAATAATTTATTCTAAAAAG CAATTATTAAGTTTCAACCGCAGAACCAAACACGCTATAAGTGTTGTACATATTGCTTTGATATGACAAAGAAGGTTCCT TTAGCTACTCATAACATTTGGCAAATACTAAAGAGTGCTATTGCTAAAGAATGGAAAATGATAGTAGTAAGTTTTTATTG AAAATTGTAACATTCAAAGACACCCCATTGAATTTTTATTTGTTTTGATGACAATTGTTATGCTGAATCTACTTGTATTT TAATATCTATTGCAGGTAGTTGCTGGGCGTTTTCAGCTATTGCAGCTGTTGAAGGTATTAACCAAATCAGGACACATCAT CTAGTGTCCTTGTCAGAGCAAGAGCTTGTAGATTGTGACGTTGAAGTGAATGAAGGATGCAATGGTGGGTTCATGGCGAA GGCATTGGAGTTCATCAAGGAAAAAGGCATAACATCAGAAAGTATTTACCCTTATACAGCAACAGATGGAACCTGTAATA CCCAAAAGGTGCAGCCTTAATTATATTGTGTTTAATAAATTGTTCAAATTTAATTAAGAGATGGGGAAACTAAAGATGCA CAAACCATGTACACTGTTTCAGATGGTGAATGAACCAGCAGTGTCAATTGATGGCTATGAGATTGTTCCAGAGAACAATG AGGTTGCATTACTCAAAGCTGCTGCAAACCAACCTATATCTGTAGGCATTGATGCTGGGGGATCTGATTTCCAGTTCTAC TCTGAGGTCAATTTCTAATACTAATCCACCTCTTCATTGGAAATTTTATTGAGTAGTTTTTAAAATCAAAATAACTATAA TCACCATCAAACATATGATAAATGCATGTTTGAAAATCTTTCTGCCATTGATTGATTATAAAACCAAGAAAAATTATGGG GGGAAACTTCTGTTTGTACCTTCTAAGTACCAGAATTGATTCTGAATAAAGAGAAGCTGATCTAAACATGCTATAATTTC AGGGAGTATTTACTGGAGACTGTGGCACTGAACTGGATCATGGAGTAGCAATTGTGGGGTATGGAGCAGCACAAGATGGA ACAAAATACTGGATAGTGAAGAACTCGTGGGGAGCCGATTGGGGAGAACAAGGTTACATTCGAATGAAAAGGGGAATATC TAAGAAGCAAGGTCTATGCGGCATAGCGATGGAGGCTTCTTATCCAATCAAAAGTTCACCAACTCTTAAAGACGAACTTT AAATGCTTCCATGAGAGTGGGACTAAGCTTGATCAACAGTTATGGTTATGTTCCTGTTAGATGCAGGAACTAATAATATT TGCATCTCATATTCGATGCCTAAAGTATCTACTATCTACTACAAGTCATGATTTCTTGATCAATTTGTTTGTCAAGAAAT ATATCAAGCAGAATCTTGATCAATATGTGTGGTTCCATTATTCCTGCAATATGTCATGATTTCTAGTAAAAGAATTAAAA TAAATGATTTGCTTCTTGAGCCTTTCACTCTCATCTTCATCTTGACCATGTTAGCATAGCATCATATGTTATGTTTCAAA CTTTAACTTTTCAAGTGTTACTTAATTACTG
CDS sequence (LotjaGi4g1v0226100.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGGAATGAAGAACCTCTTCTGTGTTGCTCTGTTTTCCCTTGCTCTGTTTCTCAGTGTTGCAGAGAGCTTTGATTACCA TGAGAAAGATTTGGCCTCCGAGGAAGGCTTGTGGGATTTGTATGAAAGATGGAGAAGCCACCACACGGTTTCTCGAAGCC TCGACGAGAAGCACAAGCGCTTCAATGTGTTCAAAGCCAATGTGATGCATGTCCATGAAACCAACAAATTGGACAAGCCT TACAAGCTCAAGTTGAACAAGTTTGCTGACTTGACCAACTATGAATTCAAAAGCATCTATGCTTCCTCAAAGATTGATCA TCACAGAATGTTCCATGGAATTCCACGAGGGAATGGAAGCTTCATGTATGAGAATGTTGATAGTGTTCCCATTTCCAAAG ATTGGAGGACGAGTGGTGCTGTCACTCCGGTAAAGGATCAAGGCCAATGTGGTAGTTGCTGGGCGTTTTCAGCTATTGCA GCTGTTGAAGGTATTAACCAAATCAGGACACATCATCTAGTGTCCTTGTCAGAGCAAGAGCTTGTAGATTGTGACGTTGA AGTGAATGAAGGATGCAATGGTGGGTTCATGGCGAAGGCATTGGAGTTCATCAAGGAAAAAGGCATAACATCAGAAAGTA TTTACCCTTATACAGCAACAGATGGAACCTGTAATACCCAAAAGATGGTGAATGAACCAGCAGTGTCAATTGATGGCTAT GAGATTGTTCCAGAGAACAATGAGGTTGCATTACTCAAAGCTGCTGCAAACCAACCTATATCTGTAGGCATTGATGCTGG GGGATCTGATTTCCAGTTCTACTCTGAGGGAGTATTTACTGGAGACTGTGGCACTGAACTGGATCATGGAGTAGCAATTG TGGGGTATGGAGCAGCACAAGATGGAACAAAATACTGGATAGTGAAGAACTCGTGGGGAGCCGATTGGGGAGAACAAGGT TACATTCGAATGAAAAGGGGAATATCTAAGAAGCAAGGTCTATGCGGCATAGCGATGGAGGCTTCTTATCCAATCAAAAG TTCACCAACTCTTAAAGACGAACTTTAA
Protein sequence (LotjaGi4g1v0226100.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MGMKNLFCVALFSLALFLSVAESFDYHEKDLASEEGLWDLYERWRSHHTVSRSLDEKHKRFNVFKANVMHVHETNKLDKP YKLKLNKFADLTNYEFKSIYASSKIDHHRMFHGIPRGNGSFMYENVDSVPISKDWRTSGAVTPVKDQGQCGSCWAFSAIA AVEGINQIRTHHLVSLSEQELVDCDVEVNEGCNGGFMAKALEFIKEKGITSESIYPYTATDGTCNTQKMVNEPAVSIDGY EIVPENNEVALLKAAANQPISVGIDAGGSDFQFYSEGVFTGDCGTELDHGVAIVGYGAAQDGTKYWIVKNSWGADWGEQG YIRMKRGISKKQGLCGIAMEASYPIKSSPTLKDEL
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| SignalP_EUK | 1 | 23 | 23 | - | – | |
| SignalP_GRAM_POSITIVE | 1 | 23 | 23 | - | – | |
| Phobius | 1 | 23 | 23 | - | – | |
| Phobius | 1 | 5 | 5 | - | – | |
| SignalP_GRAM_NEGATIVE | 1 | 23 | 23 | - | – | |
| PANTHER | 3 | 349 | 347 | 1.8E-177 | – | |
| PANTHER | 3 | 349 | 347 | 1.8E-177 | – | |
| Phobius | 6 | 18 | 13 | - | – | |
| Gene3D | 15 | 346 | 332 | 4.3E-117 | – | |
| Phobius | 19 | 23 | 5 | - | – | |
| Phobius | 24 | 355 | 332 | - | – | |
| SUPERFAMILY | 38 | 345 | 308 | 9.5E-104 | ||
| SMART | 41 | 96 | 56 | 1.1E-15 | ||
| Pfam | 41 | 96 | 56 | 5.3E-12 | ||
| Pfam | 129 | 345 | 217 | 2.6E-80 | ||
| SMART | 129 | 345 | 217 | 9.0E-120 | ||
| CDD | 130 | 344 | 215 | 3.39207E-112 | ||
| PRINTS | 147 | 162 | 16 | 1.6E-10 | ||
| ProSitePatterns | 147 | 158 | 12 | - | ||
| ProSitePatterns | 287 | 297 | 11 | - | ||
| PRINTS | 289 | 299 | 11 | 1.6E-10 | ||
| PRINTS | 305 | 311 | 7 | 1.6E-10 | ||
| ProSitePatterns | 305 | 324 | 20 | - |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Biological process | Proteolysis | The hydrolysis of proteins into smaller polypeptides and/or amino acids by cleavage of their peptide bonds. | ||
| Molecular function | Cysteine-type peptidase activity | Catalysis of the hydrolysis of peptide bonds in a polypeptide chain by a mechanism in which the sulfhydryl group of a cysteine residue at the active center acts as a nucleophile. |
Expression pattern of LotjaGi4g1v0226100.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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