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TREX

Transcript Explorer
for L. japonicus reference genomes

The Transcript Explorer tool can be used to search for candidate Lotus genes using user-defined keywords, or to comb a specific genomic interval—a combination of chromosome and position range—for genes/transcripts of interest.

Repeat Search

  • IPR016040
Separate each keyword, or gene/transcript ID, with a comma or tab. Spaces are not accepted as delimiters due to their potential use in boolean searches.
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Download the entire search result as a CSV file.

We have found 582 results. Now displaying 7 of 12 with 50 rows per page. This search has taken 5.560s to perform.

Transcript Name Description Chr Start End Strand Domain predictions GO predictions
Lj3g3v0824920.1
n.a. PREDICTED: polyamine oxidase 1-like [Cicer arietinum] gi|502128056|ref|XP_004499921.1| chr3 10335232 10346872 -
2 domain predictions
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Lj3g3v0950150.1
n.a. PREDICTED: glyceraldehyde-3-phosphate dehydrogenase, cytosolic-like [Glycine max] gi|356558930|ref|XP_003547755.1| chr3 11946882 11957312 -
3 domain predictions
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Lj3g3v1128880.1
n.a. PREDICTED: bifunctional polymyxin resistance protein ArnA-like [Glycine max] gi|356543530|ref|XP_003540213.1| chr3 15164378 15166783 +
3 domain predictions
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Lj3g3v1131210.1
n.a. PREDICTED: bifunctional polymyxin resistance protein ArnA-like [Glycine max] gi|356543530|ref|XP_003540213.1| chr3 15234297 15237636 +
3 domain predictions
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Lj3g3v1147060.1
n.a. PREDICTED: fatty acyl-CoA reductase 3-like [Glycine max] gi|356543578|ref|XP_003540237.1| chr3 15575691 15580827 -
3 domain predictions
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Lj3g3v1148100.1
n.a. PREDICTED: fatty acyl-CoA reductase 3-like isoform 1 [Glycine max] gi|356550111|ref|XP_003543433.1| chr3 15586659 15589311 -
3 domain predictions
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Lj3g3v1249990.1
n.a. PREDICTED: lysine-specific histone demethylase 1 homolog 2-like [Glycine max] gi|356517186|ref|XP_003527270.1| chr3 16204138 16208700 -
2 domain predictions
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Lj3g3v1249990.3
n.a. PREDICTED: lysine-specific histone demethylase 1 homolog 2-like [Glycine max] gi|356517186|ref|XP_003527270.1| chr3 16206856 16208700 -
2 domain predictions
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Lj3g3v1295860.1
n.a. Dihydroflavonol-4-reductase [Medicago truncatula] gi|357448325|ref|XP_003594438.1| chr3 16587522 16587944 +
3 domain predictions
 –
Lj3g3v1427090.1
n.a. PREDICTED: NADP-dependent alkenal double bond reductase P1-like [Glycine max] gi|356517014|ref|XP_003527185.1| chr3 18559121 18561795 -
2 domain predictions
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Lj3g3v1917680.1
n.a. PREDICTED: SUMO-activating enzyme subunit 2-like [Fragaria vesca subsp]. vesca] gi|470106597|ref|XP_004289650.1| chr3 24674887 24678305 -
2 domain predictions
 –
Lj3g3v1917680.2
n.a. PREDICTED: SUMO-activating enzyme subunit 2-like [Fragaria vesca subsp]. vesca] gi|470106597|ref|XP_004289650.1| chr3 24674887 24678305 -
2 domain predictions
 –
Lj3g3v2128240.1
n.a. PREDICTED: bifunctional dihydroflavonol 4-reductase/flavanone 4-reductase-like [Glycine max] gi|356522272|ref|XP_003529771.1| chr3 26763146 26767996 -
3 domain predictions
 –
Lj3g3v2148260.1
n.a. PREDICTED: bifunctional dihydroflavonol 4-reductase/flavanone 4-reductase-like [Glycine max] gi|356522272|ref|XP_003529771.1| chr3 26782232 26786771 -
3 domain predictions
 –
Lj3g3v2171530.1
n.a. PREDICTED: cinnamoyl-CoA reductase 2-like isoform X1 [Cicer arietinum] gi|502174542|ref|XP_004515542.1| chr3 26890451 26895997 -
3 domain predictions
 –
Lj3g3v2171530.2
n.a. PREDICTED: cinnamoyl-CoA reductase 2-like isoform X1 [Cicer arietinum] gi|502174542|ref|XP_004515542.1| chr3 26890451 26895997 -
3 domain predictions
 –
Lj3g3v2171530.3
n.a. PREDICTED: cinnamoyl-CoA reductase 2-like isoform X1 [Cicer arietinum] gi|502174542|ref|XP_004515542.1| chr3 26890727 26895997 -
3 domain predictions
 –
Lj3g3v2318030.1
n.a. PREDICTED: NADP-dependent malic enzyme, chloroplastic-like [Glycine max] gi|356556489|ref|XP_003546557.1| chr3 28698190 28703592 +
3 domain predictions
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Lj3g3v2320690.1
n.a. PREDICTED: glucose-6-phosphate 1-dehydrogenase, chloroplastic-like [Cicer arietinum] gi|502156149|ref|XP_004510331.1| chr3 29045511 29051739 -
3 domain predictions
 –
Lj3g3v2387600.1
n.a. PREDICTED: glyoxylate/succinic semialdehyde reductase 1-like [Cicer arietinum] gi|502157000|ref|XP_004510724.1| chr3 29704272 29709629 -
3 domain predictions
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Lj3g3v2426420.1
n.a. oxidoreductase family protein [Arabidopsis lyrata subsp]. lyrata] gi|297813401|ref|XP_002874584.1| chr3 29950880 29962632 -
3 domain predictions
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Lj3g3v2658840.2
n.a. NAD(P)-binding Rossmann-fold superfamily protein [Theobroma cacao] gi|508779968|gb|EOY27224.1| chr3 32354833 32356948 +
2 domain predictions
 –
Lj3g3v2720150.1
n.a. PREDICTED: glyoxylate/hydroxypyruvate reductase HPR3-like [Cicer arietinum] gi|502157767|ref|XP_004510901.1| chr3 33318625 33320602 -
3 domain predictions
 –
Lj3g3v2720150.2
n.a. PREDICTED: glyoxylate/hydroxypyruvate reductase HPR3-like [Cicer arietinum] gi|502157770|ref|XP_004510902.1| chr3 33323807 33325759 -
3 domain predictions
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Lj3g3v2722620.1
n.a. Quinone oxidoreductase-like protein [Medicago truncatula] gi|357514739|ref|XP_003627658.1| chr3 33491598 33493572 -
3 domain predictions
 –
Lj3g3v2735150.1
n.a. Dihydroflavonol 4-reductase [Medicago truncatula] gi|357469605|ref|XP_003605087.1| chr3 33682475 33685293 -
3 domain predictions
 –
Lj3g3v2735150.2
n.a. Dihydroflavonol 4-reductase [Medicago truncatula] gi|357469605|ref|XP_003605087.1| chr3 33682475 33683462 -
3 domain predictions
 –
Lj3g3v2737450.1
n.a. UDP-glucuronate 4-epimerase [Medicago truncatula] gi|357469707|ref|XP_003605138.1| chr3 33758594 33761798 -
3 domain predictions
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Lj3g3v2835380.1
n.a. PREDICTED: LOW QUALITY PROTEIN: tropinone reductase homolog At1g07440-like [Glycine max] gi|356569354|ref|XP_003552867.1| chr3 34791291 34795437 +
3 domain predictions
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Lj3g3v2905150.1
n.a. PREDICTED: NEDD8-activating enzyme E1 regulatory subunit-like [Glycine max] gi|356517638|ref|XP_003527494.1| chr3 36061289 36067389 +
2 domain predictions
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Lj3g3v2906180.1
n.a. PREDICTED: NEDD8-activating enzyme E1 regulatory subunit-like [Glycine max] gi|356517638|ref|XP_003527494.1| chr3 36097581 36103959 +
2 domain predictions
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Lj3g3v2971760.1
n.a. PREDICTED: momilactone A synthase-like [Glycine max] gi|356542776|ref|XP_003539841.1| chr3 36857026 36858414 +
3 domain predictions
 –
Lj3g3v2971770.1
n.a. n.a. chr3 36858732 36867450 +
3 domain predictions
 –
Lj3g3v2971780.1
n.a. PREDICTED: momilactone A synthase-like [Glycine max] gi|356544754|ref|XP_003540812.1| chr3 36858732 36860450 -
3 domain predictions
 –
Lj3g3v2995680.1
n.a. PREDICTED: bifunctional polymyxin resistance protein ArnA-like [Cicer arietinum] gi|502145749|ref|XP_004506161.1| chr3 37190864 37193891 +
3 domain predictions
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Lj3g3v2995730.1
n.a. PREDICTED: fatty acyl-CoA reductase 3-like isoform 1 [Glycine max] gi|356542728|ref|XP_003539817.1| chr3 37220495 37238714 +
3 domain predictions
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Lj3g3v2995750.1
n.a. PREDICTED: fatty acyl-CoA reductase 3-like [Glycine max] gi|356539286|ref|XP_003538130.1| chr3 37246434 37253867 +
3 domain predictions
 –
Lj3g3v2995770.1
n.a. Fatty acyl-CoA reductase [Medicago truncatula] gi|357471749|ref|XP_003606159.1| chr3 37258894 37259655 +
3 domain predictions
 –
Lj3g3v2995780.1
n.a. Fatty acyl-CoA reductase [Medicago truncatula] gi|357471757|ref|XP_003606163.1| chr3 37264268 37266644 +
3 domain predictions
 –
Lj3g3v2995910.1
n.a. PREDICTED: fatty acyl-CoA reductase 3-like [Glycine max] gi|356541416|ref|XP_003539173.1| chr3 37314944 37319108 +
3 domain predictions
 –
Lj3g3v2995910.2
n.a. Fatty acyl-CoA reductase [Medicago truncatula] gi|357471757|ref|XP_003606163.1| chr3 37315928 37319108 +
3 domain predictions
 –
Lj3g3v3187340.1
n.a. PREDICTED: UDP-glucuronic acid decarboxylase 1-like [Glycine max] gi|356550259|ref|XP_003543505.1| chr3 39227068 39231621 +
3 domain predictions
 –
Lj3g3v3188370.1
n.a. UDP-glucuronic acid decarboxylase [Medicago truncatula] gi|357454143|ref|XP_003597352.1| chr3 39237458 39242478 -
4 domain predictions
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Lj3g3v3188380.1
n.a. PREDICTED: UDP-glucuronic acid decarboxylase 6-like isoform X1 [Cicer arietinum] gi|502081951|ref|XP_004487020.1| chr3 39244147 39248198 -
4 domain predictions
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Lj3g3v3189640.1
n.a. PREDICTED: flavin-containing monooxygenase YUCCA10-like [Glycine max] gi|356507473|ref|XP_003522490.1| chr3 39396640 39398724 +
2 domain predictions
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Lj3g3v3235430.1
n.a. PREDICTED: protein TIC 62, chloroplastic-like [Cicer arietinum] gi|502148421|ref|XP_004507159.1| chr3 39792218 39807411 +
4 domain predictions
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Lj3g3v3235460.1
n.a. PREDICTED: tropinone reductase homolog [Cicer arietinum] gi|502148418|ref|XP_004507158.1| chr3 39813602 39816456 +
3 domain predictions
 –
Lj3g3v3235460.2
n.a. PREDICTED: tropinone reductase homolog [Cicer arietinum] gi|502148418|ref|XP_004507158.1| chr3 39813602 39816456 +
3 domain predictions
 –
Lj3g3v3325980.1
n.a. PREDICTED: 3beta-hydroxysteroid-dehydrogenase/decarboxylase isoform 3-like [Glycine max] gi|356544508|ref|XP_003540692.1| chr3 40470971 40477408 -
3 domain predictions
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Lj3g3v3338270.1
n.a. PREDICTED: protein TIC 62, chloroplastic-like [Cicer arietinum] gi|502149124|ref|XP_004507400.1| chr3 40878224 40880888 -
4 domain predictions
 –