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Lj3g3v2995910.2

Overview

Field	Value
Gene ID	Lj3g3v2995910
Transcript ID	Lj3g3v2995910.2
Related isoforms 1	Lj3g3v2995910.1
Lotus japonicus genome version	MG20 v3.0
Description	Fatty acyl-CoA reductase [Medicago truncatula] gi\|357471757\|ref\|XP_003606163.1\|
Working Lj name	n.a.

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Prediction algorithm	Identifier	Start	End	Length	E-value	InterPro ID
PANTHER	PTHR11011:SF25 View details on PTHR11011:SF25 Search for proteins/transripts with this domain View external data on PTHR11011:SF25	28	309	282	8.60E-159	–
PANTHER	PTHR11011 View details on PTHR11011 Search for proteins/transripts with this domain View external data on PTHR11011	28	309	282	8.60E-159	IPR026055 Show description in modal box View details on IPR026055 Search for proteins/transripts with this domain View on EBI InterPro Service
Pfam	PF07993 View details on PF07993 Search for proteins/transripts with this domain View external data on PF07993	29	137	109	1.30E-26	IPR013120 Show description in modal box View details on IPR013120 Search for proteins/transripts with this domain View on EBI InterPro Service
SUPERFAMILY	SSF51735 View details on SSF51735 Search for proteins/transripts with this domain View external data on SSF51735	48	188	141	3.05E-11	IPR016040 Show description in modal box View details on IPR016040 Search for proteins/transripts with this domain View on EBI InterPro Service
Gene3D	G3DSA:3.40.50.720 View details on G3DSA:3.40.50.720 Search for proteins/transripts with this domain View external data on G3DSA:3.40.50.720	49	158	110	2.40E-10	IPR016040 Show description in modal box View details on IPR016040 Search for proteins/transripts with this domain View on EBI InterPro Service
CDD	cd09071 View details on cd09071 Search for proteins/transripts with this domain View external data on cd09071	209	308	100	1.04E-15	IPR033640 Show description in modal box View details on IPR033640 Search for proteins/transripts with this domain View on EBI InterPro Service
Pfam	PF03015 View details on PF03015 Search for proteins/transripts with this domain View external data on PF03015	211	309	99	7.10E-19	IPR033640 Show description in modal box View details on IPR033640 Search for proteins/transripts with this domain View on EBI InterPro Service

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on April 27, 2020, while the GO metadata was last updated on April 27, 2020.

GO term	Namespace	Name	Definition	Relationships
GO:0080019 View details of GO:0080019 AmiGO InterPro QuickGO	Molecular function	Fatty-acyl-CoA reductase (alcohol-forming) activity	Catalysis of the reaction: a very long chain fatty acyl-CoA + NADPH + H+ = a very long chain primary alcohol + NADP+ + CoA.	Subterm of View details of GO:0016620

Genome browser

LORE1 insertions 28

Expression data

Expression pattern

Expression pattern of Lj3g3v2995910.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj3g3v2995910.2, powered by CORGI.

Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.