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TREX

Transcript Explorer
for L. japonicus reference genomes

The Transcript Explorer tool can be used to search for candidate Lotus genes using user-defined keywords, or to comb a specific genomic interval—a combination of chromosome and position range—for genes/transcripts of interest.

Repeat Search

  • IPR017986
Separate each keyword, or gene/transcript ID, with a comma or tab. Spaces are not accepted as delimiters due to their potential use in boolean searches.
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We have found 823 results. Now displaying 2 of 17 with 50 rows per page. This search has taken 5.446s to perform.

Transcript Name Description Chr Start End Strand Domain predictions GO predictions
Lj0g3v0204799.1
n.a. PREDICTED: zinc finger CCCH domain-containing protein 48-like [Glycine max] gi|356556342|ref|XP_003546485.1| chr0 101739836 101740440 +
2 domain predictions
1 GO term
Lj0g3v0230749.1
n.a. PREDICTED: vacuolar protein sorting-associated protein 11 homolog [Glycine max] gi|356520730|ref|XP_003529013.1| chr0 119595611 119597414 +
2 domain predictions
1 GO term
Lj0g3v0230879.1
n.a. PREDICTED: WD repeat-containing protein 18-like [Glycine max] gi|356526563|ref|XP_003531886.1| chr0 119682494 119687822 -
3 domain predictions
1 GO term
Lj0g3v0232589.1
n.a. PREDICTED: anaphase-promoting complex subunit cdc20-like [Glycine max] gi|356533257|ref|XP_003535182.1| chr0 120725639 120728473 +
3 domain predictions
1 GO term
Lj0g3v0235829.1
n.a. GTP binding protein beta 1 isoform 1 [Theobroma cacao] gi|508706146|gb|EOX98042.1| chr0 122184006 122186029 +
2 domain predictions
1 GO term
Lj0g3v0242169.1
n.a. transducin family protein [Arabidopsis lyrata subsp]. lyrata] gi|297819580|ref|XP_002877673.1| chr0 125643309 125644620 +
2 domain predictions
1 GO term
Lj0g3v0246299.1
n.a. PREDICTED: WD repeat-containing protein 26-like [Cicer arietinum] gi|502098628|ref|XP_004491280.1| chr0 127620996 127622858 +
3 domain predictions
1 GO term
Lj0g3v0246579.1
n.a. Periodic tryptophan protein-like protein [Medicago truncatula] gi|357507105|ref|XP_003623841.1| chr0 127772333 127778039 -
3 domain predictions
1 GO term
Lj0g3v0247069.1
n.a. PREDICTED: rae1-like protein At1g80670-like [Cicer arietinum] gi|502118278|ref|XP_004496188.1| chr0 128046719 128053091 +
3 domain predictions
1 GO term
Lj0g3v0249849.1
n.a. WD-40 repeat family [Medicago truncatula] gi|358349511|ref|XP_003638779.1| chr0 129506695 129509319 +
2 domain predictions
1 GO term
Lj0g3v0251579.1
n.a. PREDICTED: elongator complex protein 2-like [Glycine max] gi|356575590|ref|XP_003555922.1| chr0 130515247 130520416 -
3 domain predictions
1 GO term
Lj0g3v0253939.1
n.a. PREDICTED: rae1-like protein At1g80670-like [Cicer arietinum] gi|502118278|ref|XP_004496188.1| chr0 131756874 131763486 -
3 domain predictions
1 GO term
Lj0g3v0253949.1
n.a. PREDICTED: rae1-like protein At1g80670-like [Cicer arietinum] gi|502118278|ref|XP_004496188.1| chr0 131764729 131765579 -
3 domain predictions
1 GO term
Lj0g3v0257609.1
n.a. PREDICTED: WD repeat-containing protein 26-like [Cicer arietinum] gi|502114759|ref|XP_004495043.1| chr0 133731146 133736152 -
3 domain predictions
1 GO term
Lj0g3v0259899.1
n.a. Activating molecule in BECN1-regulated autophagy protein [Medicago truncatula] gi|357510311|ref|XP_003625444.1| chr0 135052039 135057310 -
2 domain predictions
1 GO term
Lj0g3v0260259.1
n.a. PREDICTED: zinc finger CCCH domain-containing protein 48-like [Cicer arietinum] gi|502157475|ref|XP_004510889.1| chr0 135216097 135217608 -
3 domain predictions
1 GO term
Lj0g3v0260419.1
n.a. Uncharacterized protein TCM_034012 [Theobroma cacao] gi|508722824|gb|EOY14721.1| chr0 135277724 135280179 +
2 domain predictions
1 GO term
Lj0g3v0268739.1
n.a. PREDICTED: E3 ubiquitin-protein ligase RFWD3-like isoform X3 [Cicer arietinum] gi|502111492|ref|XP_004494073.1| chr0 139169413 139171213 +
2 domain predictions
1 GO term
Lj0g3v0269979.1
n.a. PREDICTED: topless-related protein 4-like [Glycine max] gi|356546114|ref|XP_003541476.1| chr0 139884904 139890687 +
3 domain predictions
1 GO term
Lj0g3v0269979.2
n.a. PREDICTED: topless-related protein 4-like [Glycine max] gi|356546114|ref|XP_003541476.1| chr0 139884904 139890687 +
3 domain predictions
1 GO term
Lj0g3v0274089.1
n.a. WD40 domain-containing protein [Arabidopsis thaliana] gi|22328224|ref|NP_192095.2| chr0 142076675 142085867 +
2 domain predictions
1 GO term
Lj0g3v0282539.1
n.a. PREDICTED: DNA damage-binding protein 1-like isoform 2 [Glycine max] gi|356525403|ref|XP_003531314.1| chr0 146470281 146473871 +
2 domain predictions
1 GO term
Lj0g3v0283109.1
n.a. WD-repeat cell cycle regulatory protein [Glycine max] gi|351727655|ref|NP_001237168.1| chr0 146731979 146736047 -
3 domain predictions
1 GO term
Lj0g3v0283109.3
n.a. PREDICTED: protein FIZZY-RELATED 3-like [Glycine max] gi|356569370|ref|XP_003552875.1| chr0 146731979 146736047 -
3 domain predictions
1 GO term
Lj0g3v0288939.2
n.a. transducin/WD40 domain-containing protein [Arabidopsis thaliana] gi|30693183|ref|NP_190509.2| chr0 150123862 150135062 -
2 domain predictions
1 GO term
Lj0g3v0288939.4
n.a. transducin/WD40 domain-containing protein [Arabidopsis thaliana] gi|30693183|ref|NP_190509.2| chr0 150123862 150135062 -
2 domain predictions
1 GO term
Lj0g3v0290509.1
n.a. Syntaxin-binding protein [Medicago truncatula] gi|357484159|ref|XP_003612366.1| chr0 150832996 150846668 -
2 domain predictions
1 GO term
Lj0g3v0290509.2
n.a. Syntaxin-binding protein [Medicago truncatula] gi|357484159|ref|XP_003612366.1| chr0 150832996 150844259 -
2 domain predictions
1 GO term
Lj0g3v0291969.1
n.a. PREDICTED: cleavage stimulation factor subunit 1-like [Glycine max] gi|356519146|ref|XP_003528235.1| chr0 151464789 151471597 -
3 domain predictions
1 GO term
Lj0g3v0291969.2
n.a. PREDICTED: cleavage stimulation factor subunit 1-like [Cicer arietinum] gi|502087239|ref|XP_004488472.1| chr0 151464789 151472394 -
3 domain predictions
1 GO term
Lj0g3v0294029.1
n.a. PREDICTED: transcriptional corepressor LEUNIG-like isoform X3 [Cicer arietinum] gi|502132293|ref|XP_004501292.1| chr0 152771006 152777286 +
3 domain predictions
1 GO term
Lj0g3v0294029.2
n.a. PREDICTED: transcriptional corepressor LEUNIG-like isoform X3 [Cicer arietinum] gi|502132293|ref|XP_004501292.1| chr0 152771006 152777286 +
3 domain predictions
1 GO term
Lj0g3v0294029.3
n.a. PREDICTED: transcriptional corepressor LEUNIG-like isoform X2 [Cicer arietinum] gi|502132291|ref|XP_004501291.1| chr0 152771374 152777286 +
3 domain predictions
1 GO term
Lj0g3v0299869.1
n.a. PREDICTED: protein TOPLESS-like isoform X1 [Cicer arietinum] gi|502080679|ref|XP_004486640.1| chr0 155783226 155791874 -
2 domain predictions
1 GO term
Lj0g3v0299869.3
n.a. PREDICTED: topless-related protein 1-like [Glycine max] gi|356550630|ref|XP_003543688.1| chr0 155787253 155791878 -
3 domain predictions
1 GO term
Lj0g3v0299959.1
n.a. PREDICTED: WD repeat-containing protein 13 [Vitis vinifera] gi|225427694|ref|XP_002274240.1| chr0 155807056 155809132 -
2 domain predictions
1 GO term
Lj0g3v0299959.2
n.a. PREDICTED: WD repeat-containing protein 13-like [Glycine max] gi|356546388|ref|XP_003541608.1| chr0 155807056 155813473 -
3 domain predictions
1 GO term
Lj0g3v0307769.1
n.a. PREDICTED: eukaryotic translation initiation factor 2A-like [Cicer arietinum] gi|502142951|ref|XP_004505162.1| chr0 160665354 160668470 +
2 domain predictions
1 GO term
Lj0g3v0310479.1
n.a. PREDICTED: anaphase-promoting complex subunit cdc20-like [Glycine max] gi|356533257|ref|XP_003535182.1| chr0 162150911 162154315 +
3 domain predictions
1 GO term
Lj0g3v0324319.1
n.a. PREDICTED: vacuolar protein sorting-associated protein 8 homolog [Glycine max] gi|356560233|ref|XP_003548398.1| chr0 169479543 169483357 +
3 domain predictions
1 GO term
Lj0g3v0330279.1
n.a. PREDICTED: coatomer subunit alpha-1-like [Cicer arietinum] gi|502118198|ref|XP_004496148.1| chr0 172624600 172626582 -
3 domain predictions
1 GO term
Lj0g3v0341359.2
n.a. PREDICTED: WD repeat-containing protein 62-like [Cicer arietinum] gi|502168912|ref|XP_004514492.1| chr0 178846122 178858818 -
3 domain predictions
1 GO term
Lj0g3v0357459.1
n.a. PREDICTED: probable serine/threonine-protein kinase vps15-like isoform X2 [Cicer arietinum] gi|502164129|ref|XP_004513057.1| chr0 188205980 188209321 +
2 domain predictions
1 GO term
Lj0g3v0358089.1
n.a. PREDICTED: ASTRA-associated protein 1-like [Glycine max] gi|356517988|ref|XP_003527666.1| chr0 188430783 188436843 +
3 domain predictions
1 GO term
Lj0g3v0362529.1
n.a. PREDICTED: vacuolar protein sorting-associated protein 41 homolog [Glycine max] gi|356539325|ref|XP_003538149.1| chr0 191165075 191176419 -
2 domain predictions
1 GO term
Lj0g3v0362529.2
n.a. PREDICTED: vacuolar protein sorting-associated protein 41 homolog [Glycine max] gi|356539325|ref|XP_003538149.1| chr0 191169543 191176419 -
2 domain predictions
1 GO term
Lj0g3v0363439.1
n.a. PREDICTED: myosin heavy chain kinase B-like [Glycine max] gi|356529844|ref|XP_003533497.1| chr0 191717545 191718096 -
3 domain predictions
1 GO term
Lj0g3v0363449.1
n.a. PREDICTED: myosin heavy chain kinase B-like [Glycine max] gi|356529844|ref|XP_003533497.1| chr0 191718048 191718851 -
3 domain predictions
1 GO term
Lj1g3v0415560.1
n.a. PREDICTED: F-box/WD repeat-containing protein sel-10-like [Glycine max] gi|356516706|ref|XP_003527034.1| chr1 5398611 5401238 -
3 domain predictions
1 GO term
Lj1g3v0579700.1
n.a. PREDICTED: LOW QUALITY PROTEIN: WD repeat and HMG-box DNA-binding protein 1-like [Cicer arietinum] gi|502181680|ref|XP_004516862.1| chr1 7224189 7228979 +
3 domain predictions
1 GO term