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TREX

Transcript Explorer
for L. japonicus reference genomes

The Transcript Explorer tool can be used to search for candidate Lotus genes using user-defined keywords, or to comb a specific genomic interval—a combination of chromosome and position range—for genes/transcripts of interest.

Repeat Search

  • IPR002020
Separate each keyword, or gene/transcript ID, with a comma or tab. Spaces are not accepted as delimiters due to their potential use in boolean searches.
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We have found 22 results. Now displaying 1 of 1 with 50 rows per page. This search has taken 5.751s to perform.

Transcript Name Description Chr Start End Strand Domain predictions GO predictions
Lj2g3v3110960.1
n.a. Citrate synthase [Medicago truncatula] gi|357494363|ref|XP_003617470.1| chr2 40240329 40246342 -
5 domain predictions
1 GO term
Lj3g3v0929270.1
n.a. PREDICTED: citrate synthase, mitochondrial-like [Glycine max] gi|356525687|ref|XP_003531455.1| chr3 10978821 10986450 -
5 domain predictions
1 GO term
Lj4g3v2265020.1
n.a. PREDICTED: ATP-citrate synthase beta chain protein 1-like [Glycine max] gi|356556001|ref|XP_003546316.1| chr4 31430684 31436001 +
3 domain predictions
1 GO term
Lj4g3v2266260.1
n.a. ATP citrate lyase alpha subunit [Glycyrrhiza uralensis] gi|148872938|gb|ABR15094.1| chr4 31525270 31532902 -
3 domain predictions
1 GO term
Lj6g3v0922180.1
n.a. Citrate synthase [Medicago truncatula] gi|357459271|ref|XP_003599916.1| chr6 9588377 9594757 +
5 domain predictions
1 GO term
Lj6g3v1915820.1
n.a. PREDICTED: ATP-citrate synthase beta chain protein 1-like [Glycine max] gi|356556001|ref|XP_003546316.1| chr6 21503671 21510032 -
3 domain predictions
1 GO term
Lj6g3v1915830.1
n.a. ATP-citrate lyase subunit B [Arabidopsis thaliana] gi|62318795|dbj|BAD93838.1| chr6 21512911 21514113 -
2 domain predictions
1 GO term
LotjaGi1g1v0038100.1
n.a. Citrate synthase; TAIR: AT2G42790.1 citrate synthase 3; Swiss-Prot: sp|P49299|CYSZ_CUCMA Citrate synthase, glyoxysomal; TrEMBL-Plants: tr|G7K3F1|G7K3F1_MEDTR Citrate synthase; Found in the gene: LotjaGi1g1v0038100 LjG1.1_chr1 5312549 5319887 -
4 domain predictions
1 GO term
LotjaGi3g1v0127400.1
n.a. Citrate synthase; TAIR: AT2G44350.1 Citrate synthase family protein; Swiss-Prot: sp|P49298|CISY_CITMA Citrate synthase, mitochondrial; TrEMBL-Plants: tr|A0A0L9UJS8|A0A0L9UJS8_PHAAN Citrate synthase; Found in the gene: LotjaGi3g1v0127400 LjG1.1_chr3 15669297 15677549 -
4 domain predictions
1 GO term
LotjaGi3g1v0127400.2
n.a. Citrate synthase; TAIR: AT2G44350.1 Citrate synthase family protein; Swiss-Prot: sp|P49298|CISY_CITMA Citrate synthase, mitochondrial; TrEMBL-Plants: tr|A0A072V8L1|A0A072V8L1_MEDTR Citrate synthase; Found in the gene: LotjaGi3g1v0127400 LjG1.1_chr3 15670149 15676357 -
4 domain predictions
1 GO term
LotjaGi4g1v0331500.1
n.a. ATP-citrate synthase, putative; TAIR: AT3G06650.1 ATP-citrate lyase B-1; Swiss-Prot: sp|Q93VT8|ACLB1_ORYSJ ATP-citrate synthase beta chain protein 1; TrEMBL-Plants: tr|A6MZ92|A6MZ92_GLYUR ATP citrate lyase alpha subunit; Found in the gene: LotjaGi4g1v0331500 LjG1.1_chr4 71049914 71056168 +
2 domain predictions
1 GO term
LotjaGi4g1v0331500.2
n.a. ATP-citrate synthase, putative; TAIR: AT3G06650.1 ATP-citrate lyase B-1; Swiss-Prot: sp|Q93VT8|ACLB1_ORYSJ ATP-citrate synthase beta chain protein 1; TrEMBL-Plants: tr|A6MZ92|A6MZ92_GLYUR ATP citrate lyase alpha subunit; Found in the gene: LotjaGi4g1v0331500 LjG1.1_chr4 71051451 71055847 +
2 domain predictions
1 GO term
LotjaGi4g1v0331500.3
n.a. ATP-citrate synthase, putative; TAIR: AT3G06650.1 ATP-citrate lyase B-1; Swiss-Prot: sp|Q93VT8|ACLB1_ORYSJ ATP-citrate synthase beta chain protein 1; TrEMBL-Plants: tr|A6MZ92|A6MZ92_GLYUR ATP citrate lyase alpha subunit; Found in the gene: LotjaGi4g1v0331500 LjG1.1_chr4 71051750 71055847 +
2 domain predictions
1 GO term
LotjaGi4g1v0331500.4
n.a. ATP-citrate synthase, putative; TAIR: AT3G06650.1 ATP-citrate lyase B-1; Swiss-Prot: sp|Q93VT8|ACLB1_ORYSJ ATP-citrate synthase beta chain protein 1; TrEMBL-Plants: tr|A6MZ92|A6MZ92_GLYUR ATP citrate lyase alpha subunit; Found in the gene: LotjaGi4g1v0331500 LjG1.1_chr4 71051750 71055847 +
2 domain predictions
1 GO term
LotjaGi6g1v0170700.1
n.a. Citrate synthase; TAIR: AT2G42790.1 citrate synthase 3; Swiss-Prot: sp|P49299|CYSZ_CUCMA Citrate synthase, glyoxysomal; TrEMBL-Plants: tr|G7IZY5|G7IZY5_MEDTR Citrate synthase; Found in the gene: LotjaGi6g1v0170700 LjG1.1_chr6 45738208 45745880 +
4 domain predictions
1 GO term
LotjaGi6g1v0170700.2
n.a. Citrate synthase; TAIR: AT2G42790.1 citrate synthase 3; Swiss-Prot: sp|P49299|CYSZ_CUCMA Citrate synthase, glyoxysomal; TrEMBL-Plants: tr|G7IZY5|G7IZY5_MEDTR Citrate synthase; Found in the gene: LotjaGi6g1v0170700 LjG1.1_chr6 45738555 45744597 +
4 domain predictions
1 GO term
LotjaGi6g1v0170700.3
n.a. Citrate synthase; TAIR: AT2G42790.1 citrate synthase 3; Swiss-Prot: sp|P49299|CYSZ_CUCMA Citrate synthase, glyoxysomal; TrEMBL-Plants: tr|A0A151RYN3|A0A151RYN3_CAJCA Citrate synthase; Found in the gene: LotjaGi6g1v0170700 LjG1.1_chr6 45739077 45744597 +
4 domain predictions
1 GO term
LotjaGi6g1v0258800.1
n.a. ATP-citrate synthase, putative; TAIR: AT3G06650.1 ATP-citrate lyase B-1; Swiss-Prot: sp|Q93VT8|ACLB1_ORYSJ ATP-citrate synthase beta chain protein 1; TrEMBL-Plants: tr|V7BMZ5|V7BMZ5_PHAVU Uncharacterized protein; Found in the gene: LotjaGi6g1v0258800 LjG1.1_chr6 57170652 57177518 +
2 domain predictions
1 GO term
LotjaGi6g1v0258800.2
n.a. ATP-citrate synthase, putative; TAIR: AT3G06650.1 ATP-citrate lyase B-1; Swiss-Prot: sp|Q93VT8|ACLB1_ORYSJ ATP-citrate synthase beta chain protein 1; TrEMBL-Plants: tr|V7BMZ5|V7BMZ5_PHAVU Uncharacterized protein; Found in the gene: LotjaGi6g1v0258800 LjG1.1_chr6 57171649 57176934 +
2 domain predictions
1 GO term
LotjaGi6g1v0258800.3
n.a. ATP-citrate synthase, putative; TAIR: AT3G06650.1 ATP-citrate lyase B-1; Swiss-Prot: sp|Q93VT8|ACLB1_ORYSJ ATP-citrate synthase beta chain protein 1; TrEMBL-Plants: tr|V7BMZ5|V7BMZ5_PHAVU Uncharacterized protein; Found in the gene: LotjaGi6g1v0258800 LjG1.1_chr6 57171650 57176934 +
2 domain predictions
1 GO term
LotjaGi6g1v0258800.4
n.a. ATP-citrate synthase, putative; TAIR: AT3G06650.1 ATP-citrate lyase B-1; Swiss-Prot: sp|Q93VT8|ACLB1_ORYSJ ATP-citrate synthase beta chain protein 1; TrEMBL-Plants: tr|V7BMZ5|V7BMZ5_PHAVU Uncharacterized protein; Found in the gene: LotjaGi6g1v0258800 LjG1.1_chr6 57171949 57176934 +
2 domain predictions
1 GO term
LotjaGi6g1v0258800.5
n.a. ATP-citrate synthase, putative; TAIR: AT3G06650.1 ATP-citrate lyase B-1; Swiss-Prot: sp|Q93VT8|ACLB1_ORYSJ ATP-citrate synthase beta chain protein 1; TrEMBL-Plants: tr|V7BMZ5|V7BMZ5_PHAVU Uncharacterized protein; Found in the gene: LotjaGi6g1v0258800 LjG1.1_chr6 57171949 57176934 +
2 domain predictions
1 GO term