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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0038100 |
| Transcript ID | LotjaGi1g1v0038100.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Citrate synthase; TAIR: AT2G42790.1 citrate synthase 3; Swiss-Prot: sp|P49299|CYSZ_CUCMA Citrate synthase, glyoxysomal; TrEMBL-Plants: tr|G7K3F1|G7K3F1_MEDTR Citrate synthase; Found in the gene: LotjaGi1g1v0038100 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:5312549..5319887) extracted from Lotus japonicus Gifu genome v1.2.
TGATAAAACTTGAATTTACTTTTTTGGTATTATGAAGGGTCAAGCCCAAAAACTACACTAAAACCCTTCTAAGAAAGGAA ACACTAGAAAGATCAACAAGTAACAAATTTCTGTAATAAGCAGGTGGAGAAAGCAAAAAATGCACACCAAAAGCAACATC GCGTACTCGATTAATTAAAAAATTTGTCACATAATTAGTATCCCTTCTGCTGCGAATAACATAAAACTTGTATTTAGAGG CATAGTAATAGTCATAATTGATGCAATCAGTATTTAAAAGCATAAGGTGAGTCATATTTTGAGGCCATGAGCCAGCTTAC GGTGTGTTTGTTAGGATGAAAACATTGGAGAGAATTTCAAAAAAAAAAAAAAAAAACATTGGAGAGACTAGAGATAGAAG AAGATAGAGATTTGAAGAGAAATAACTTAGTTTCCTACATTCATGAATTTGGATTGGAAAAAAATATACATGACAATTGA CAACCACGTTAACCAGTCACACTATCCTAACTAGAAGGCTATGCTTGGCTTGCATATGCAATTGCATTAGCAGAAAATGA ACGAGGATAGGAATGGGAGGATAAAGATCATGTCATAGTCCCATGATGCGTCACTGTTGTGCTGTGACGCATTTCTTCAC GTAACAGACAAATAATTAGATAAACAGTTGCCACTTGCCGCGTCCTTCAAGATCAAGCAATCCTCCCTCACTATGCGCGC GCGATATATTTATCTTCTTTTATTTGTTTTTCAACTTTTATTAAGCTATACCGTCAAAAAAAAAACTTTTATTAAGCTAT AATTTTCAATAAAATTATTTAAAAAAATTAATTATAACCAAAAAATATATAATTTTATCTAATCAAATTATACAATATTA GAACCCTCAAAATATTGTATATCTCGATTTCTAATAGTAAATGTGAGAGAAAGAAAATGATTAATATGTAATCTAAAATG AAAAGTAAAATAAAATTTCTAAAAAATCTAGAGCACATATCATAGAAGAAATATATAAATCAATCTTACCATTATCATCA ATTATAATATTTCAATAATGTTCCGGAAATAAGTTAAAATCGTCTAAATCTTAAGATTGAATTTTTTATTTTGAAACGAA GATTGAAAGTTTAATCTTTAAAAACCTTTATTCTTTTGAGATCTTTAACTTCATTAGGTCGAATTAAAATGGCGAGAGCA ATTTAACAAATAAACTTAAAAAATATTATCAATTGTAATAAAAAAACAACATTAATTTTTTTTTCCTTTACTTATAATCG AACCAAAGAAATTAGTGAAGTTTATTTCCATTTTTACGAGCCAAGAGTCTCTCTCTTTCTATCTTCACTTTGTTTCCTCT GCTTCATTCATTTCCAAATCCTCCTCCATCATTCTCTCTGATTTCTTCTGCCAAACAGAAAATGTCAACCGATTCAGAAT CAACCACCATGCTCGCTCGCGGCCGTTTGGCCATGCTCACAGCTCACTTGCTCCCTTCCAGCTACACCGAAACCACCACC GATCACGTCCTCCCTCACCGCCTCTCCGCTCAGTCACCGCCGTCAACCACCCTCAACGGCACCTTAACCATCGTCGACGA GAGAACCGGCAAGAAGTACCAGGTCGAGGTCTCCCAAGATGGCACTGTCAGAGCTAGTGACTTCAAGAAGGTGGAGTAAC CTGATGATCACCATTCACCAATGGAAGTTTCAGTTTTTATCTCGGTTCTCGAAGGAATTTCTAATTTTGCAAAATGGGTC TCCGTCAAAATTTCTCCTTTCAGCTTTGTTGAATTGTTTGGTGGAATTCTCTACTTTTTCATATTTTTGAGTGTTTGTTG TTATCAATCATGTTCATGTCATGCTTCTAAGAATGAATAAATTTGGTCATGGTTACATGCTGAAATCATTGGTGGGGTAG TTTTTTGTTTTGTTATAGTGTGATTGTTTATGCTTTTGTTTTAATAATGATATATATATATTGTGGGGTTCTCTGATTTT TTATGTGCAGATAGCAACCGGGAAGAATGACAAGGGACTCAAGCTTTATGATCCTGGCTATTTAAACACAGCTCCGGTTC GATCAACTATTAGTTACATTGATGGTGATGAGGGGATTCTTAGATATAGAGGCTACCCAATTGAGGAGTTGGCAGAGAAA AGCACTTTTGTGGAAGTGTCCTATCTCATAAGTGAGTCTTGTTTTTTTTCTTATAAGTGTATGTGTGGGCCTTTTTTTAT GAGTAGATAAAACATTTCCACTGTTGTTTAGGTCCAATAAATATTTTATCTCAGTGACTCGGGTGTTGTTCTGCATCCTG TTTGTTACAACTTGAATGCTTCAATTTATGTGTAGCATGAAATTGTCTGAAGTTTATTGACTTTTTCTATGTTTTTAAGT GTATGGGAGTTTGCCTTCTGAAAGCCAGTTAGCGGAATGGAATTTCGCTATATCTCAGCATTCAGCTGTTCCACAAGGAG TTTTGGTGAGCTTTTATGCTATAACTAATAAGTAATAACTCTTGCTATTGTTCAATGGTCCTGAAGTCCTATATGCTAAA TGATAACTTCTTTTTTGTTTCATTAAGTGACAGCTTTTTAACTATAAACAACTTCCCCTAGTTGTACTGCAATTTGAACT TTAGTATGCATGTGGTTTTTTATGTTGTTAAATGAATCTTGTGGATAGTAGTACTTAACTACTTTTATGAGGTAAATCAG GGGGGATAATTTTTCTAACTGGGTTTCCTTGAGGCATCTTTATTTCTGAAGCAGATGTTCCTTTTTACTCTTTCTTTTTC TTCTGGTTGAAGCAAAACTTTACTACGACTTAAACATGGTTTAGAACTACTGGACATATCCTAGAATATCACTTGTTAAA TTTCCAGAACAACTTGTGTTTTAATGGACAAGCTTAAGAATTTACTTTGCAACCACTTACTGGGCTCTCCTGTATTGAGA GACAGATTGAATTGTTCATTTCCTTCGATGAATTATATAGTTATCAATGTAACTGACTTGCAGTATCAATTTACATTTGT TTTCTAGGATATCATACAATCAATGCCTCATGATGCACATCCTATGGGTGTGCTTGTTAATGCATTAAGTGCCCTCTCTG TTTTTCATCCTGACGCAAATCCTGCTCTCAGAGTAAGTAATAAAAGCGTCTACCGAGTTACTCAACTTGAACTGTTTTTG CACGATGTGTTGGAAATTTGGGTGTGATAATCCTGGATAACTTCAAAGAATCGTGTTCATACACTTTCCGAACAAAGTAT TTCGACCCTATTCTTGCCTGGGTTCACGAAATCCTTGTTGGGATAATTCTTGAAGAACAATCTGTCTTTGGCAATCAAGA ACAGATCAGGAATGTAGAGAGAAAGTATTGTTTCTGTTTTTCTGTATCTGAAGTCTGAGGCCAATGACTCCTTATATTGG AGTTTGTTTTTGAAACCGAAAAACGGTTAATCACATCGGCACTTTAATCGCGGTCAATTATGCGTTGGCTCAACAAGCGT GCACTCCGCACTACCCTAACTTGTTTCCGAACTTAACGCATAATCACATCGGCCTACAGTAGATCACATTACTACTAAAA TCCATTGATGATACTAAAATCACCAACACGATGCAAGTGCACGGAATAATATACCATGGCACTTTGTATATCTTAATTTT GTGGGATAATACATTCTTACTTTTTGATGTGTTGAGCGCTTGTTTATCTTAATTTTATTATAATTTAATTAATGCAGGGT CTTGATATTTATAACTCAAAGGAAGTCAGAGACAAACAAATAGCACGGGTTATTGGAAAGGTGTTCTTATTCAGTTCTCT TTGCTCCTCTCACTCATTTTCTCGTGTAGATGAAGTTACTCAGCTATTCTGAATGTCTCTTTCACAGCCTGTATCTTTCA CTGTGACTAATTTTATTTGCGACGCGTCCTGCTGCTTGATTTCAATATCATTGATTTTACTGCAGATTACAACAATTGCT GCTGCAGTTTATCTTAGAATGGCAGGAAGGCCGCCTGTGCTTCCATCCAACAACCTTTCTTACACAGAGAACTTCCTATA CATGCTAGATTCTTTGTATGTTTTATGGTACTTTTAGGTCTGATGGATAATTTGGCATAGCTAAATTTTTCTTCTGCATA GCTTAATGATAGTTTGATTTTTGCGCTCATATTAAAAATCATTTCTTTCAGAAGAACTATAATTCAATCTAAGATGATAT AGAATGGTAGTCACATACTACATTTTTTTTTTTTGAGAGAATTTTAACTTAAATAAATCTGCACTGTGCTGCTTTCAGAG GCAATCGGTCATATAAACCCAATCCTCGGCTAACTCGTGCTCTGGACATTATCTTCATCCTGCATGCTGAACATGAAATG AACTGCTCTACGTCTGCTGTCCGGCACCTTGCATCAAGGTAGATATCTTACCACAATACTATTTAAGCTACATAAAACAG TCAGTGTACTGTGTAATATTGCTTAACTGTTATCTTATTTCAGTGGCGTTGATGTATACACTGCTATTGCTGGGGCTGTT GGAGCTCTGTATGGGCCTCTTCACGGTGGAGCTAATGAGGTAACTATAAGTACTTAATGAAGCTGTCACGGTCTTTTATA TAATTGAGAATGCTAATGTGACCTTTGATTCTGCAGGCTGTCCTCAAAATGCTGAGTGAAATTGGGACTGTTGAGAACAT TCCAGAATTCATTGAAGGTGTCAAAGCCAGGTGGCCATTACTTCATTTTTTTGTTATCTAGGTCTTAGTTTTTCTCTATC TGTGTTAGCTTAATTAATGCTTATACCCTGAAAGGATTGCATGATGGGTTCCCTTGTTTCTGCCTCCTCTTTTGGTGGTA TCATGACTCATCTCATCACAGCAGGCAGGGAACATGATGTCTTAGTTGATATTCTTGTACTTTGTTTTTCCTCTAGGAAA CAAAAGCTCTCTGGTTTTGGACACCGAGTGTATAAAAACTATGATCCCAGAGCAAAGGTCCTAAGAAAACTGACTGAGGA AGTGTTTTCCATTGTTGGCCGGGATCCTCTTATCGAGGTGGTTATCCATTTTTTAGTCACTATCTCAGTGCTGCCTGTCT GTTATACATTCCTTAAGTTGGATATGCTGGGCATGAGGCCTATGACCAGGGTGATGAATACAGTGACAGACTACTATATT TTGAAATTTTCATTTTATATGAAAATGTATTTTAATTTTGATTTCAAATTGTAATGCATGGTATGTAATGTATATTTGTT CATATTTGTGCCCATATTGCTTGCCTTAACCAGCCCCCACTGCATATTTGAAAATTTAAATGCGGAGGAAACTCGTTTAG AAAAGAGGTTGTTTCAAGGTGCTCTTTACAACATTGTGGATACATGGTTAGCATATAATATGACTGCATATATATTCATT AGATGTCATGTTTGGTTTGAAAATGAGGTAGCAGATCAAGTCAGACTTAAAGCATTTCAAAATCTCAAATCTTTCCAAAT GTCTCACAACTGTTGTAATTTTCAAACTAAGTTTTTCTTAGGGTATCTAACTCTGCTTTTATTATTCGATCAGGAAAATA TCTTCTTAATTTAATGTCAACTTGGTTTTTTTTTTGGTTTATTATACTGAGTTTAAATCTTAAAAGTTCTAACTTCTCTA TGCAATTATTTGATTGTTCAGATTGCAGTTGCCTTGGAGAAGATCGCTCTATCTGATGAATATTTCATCAAGAGGAAGCT TTATCCAAATGTTGACTTCTACTCTGGATTAATTTATAGGTAATCTATTATTACATCCAGTTACTATAAACCAGGGAGGA TTAAATATGCTGCTCCCCCAGTATATCATACAAGGGAAGGGAACTAATAGTTTTGTGTTATCAGGGCCATGGGGTTTCCT CCTGAGTATTTCACAGTTTTATTTGCTATCCCTCGAATGGCGGGGTACTTGGCACATTGGAAAGAGTCCTTGGATGATCC TGATACAAAGATTATGAGGCCTCAACAGGTATCCTTTCTCATTTCTCTGATTGTGATTTTTCCGCATATTTAAAATATAT CTTAGTTATAGTTGATCATAATATGGTGCCAATATGGCCGTACATGTTATCTATCATCTGGTTTACTTGAAAAGGGTTTT CTAGTTTTATCATGACCGCATTATATGTTTCGTAACACTAGTATAGGGAAAAATTTGCATAATGCATCACAACATTAAGA TAAACCTTGAGTGGATGTGGATCCATCTACAGCTACCCTGTTCAATTCAAACCAAAAGATATATAGCAACATATGATGCT TGTATATTTCATTTCTATTCCCTATTTTAGTTAAACTGTTTGAGTTGTGCCATTTAAAATGAGACATATTACATAATACA TGAGAAGAGAGAGAAGTGAAAAATTCCTTTGCAACTAAACATTCAGGCACAAGTTACAAAATGCTTTTCATACTAATGGA ATGGTCATTATCCAATCTTTTTTATGTATCAGGTTTATGTTGGAGAATGGTTGCGTCATTATACACCAATCAATAAAAGG ACCGTATCAAGTGATGCTGATAAGCTTGGTCAGGTGACTACATCAAATGCCTCAAAGCGACGACTCGCTGGATCTGGGAT GTAGACTCAATTTGGATTTGCAAGTTACATGACCAAAAGGTGATATATAACTCTTAAGAATGTGCAGGATGAAATAGTCA TTTGTTCATGGTTTTGTATAATCTAAAGCCAACTTTGCTATAAACAGGATGATGCCGGAGATTATGCCTATGCTTAAATA ATGCCGCTGGCTTCCCATCCATCACCTACTAGAAGAATGATGCTGGTGGGGTTTGTTGTTCCAGCATTTACATGCAAGTT ATAAATCCCATTAGTTCTACTTATGAATTCTGTTTTGTTAAAATTATTTAGGGGATAGTTAATATATAAGCACACCTGGA GATCTCATGGGTAGTAATCTGGTGCATGTTTGTTAAAGCAGTAGAACGAATTTTGTGTACTAGTGGGAACATGTTTCCTT TGACCCCCATAATTGGGTGCATGAGATGAATAAAATCTGTCGACAATTTTTTTTTCAATGTTTCATTTGTACCGAGTTCA ATTGTAGCAAGATAAATCATTATTTTCTAATCTCACCTCCCCTTATAGGTGCGTGAACTACGCACTTTTAAGTGAGTGTA AAAAATGGAGGTGGAATTAGATGAGTGGGGGTGTTAATAACAACTACCAAAAGGAAAAAAAAAATATGTATATGGTGTTT GTTTATATTGGAAATTACATGATATAGATGAATGTGTTAAGGGCCCGTTTGATATGTTG
CDS sequence (LotjaGi1g1v0038100.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTCAACCGATTCAGAATCAACCACCATGCTCGCTCGCGGCCGTTTGGCCATGCTCACAGCTCACTTGCTCCCTTCCAG CTACACCGAAACCACCACCGATCACGTCCTCCCTCACCGCCTCTCCGCTCAGTCACCGCCGTCAACCACCCTCAACGGCA CCTTAACCATCGTCGACGAGAGAACCGGCAAGAAGTACCAGGTCGAGGTCTCCCAAGATGGCACTGTCAGAGCTAGTGAC TTCAAGAAGATAGCAACCGGGAAGAATGACAAGGGACTCAAGCTTTATGATCCTGGCTATTTAAACACAGCTCCGGTTCG ATCAACTATTAGTTACATTGATGGTGATGAGGGGATTCTTAGATATAGAGGCTACCCAATTGAGGAGTTGGCAGAGAAAA GCACTTTTGTGGAAGTGTCCTATCTCATAATGTATGGGAGTTTGCCTTCTGAAAGCCAGTTAGCGGAATGGAATTTCGCT ATATCTCAGCATTCAGCTGTTCCACAAGGAGTTTTGGATATCATACAATCAATGCCTCATGATGCACATCCTATGGGTGT GCTTGTTAATGCATTAAGTGCCCTCTCTGTTTTTCATCCTGACGCAAATCCTGCTCTCAGAGGTCTTGATATTTATAACT CAAAGGAAGTCAGAGACAAACAAATAGCACGGGTTATTGGAAAGATTACAACAATTGCTGCTGCAGTTTATCTTAGAATG GCAGGAAGGCCGCCTGTGCTTCCATCCAACAACCTTTCTTACACAGAGAACTTCCTATACATGCTAGATTCTTTAGGCAA TCGGTCATATAAACCCAATCCTCGGCTAACTCGTGCTCTGGACATTATCTTCATCCTGCATGCTGAACATGAAATGAACT GCTCTACGTCTGCTGTCCGGCACCTTGCATCAAGTGGCGTTGATGTATACACTGCTATTGCTGGGGCTGTTGGAGCTCTG TATGGGCCTCTTCACGGTGGAGCTAATGAGGCTGTCCTCAAAATGCTGAGTGAAATTGGGACTGTTGAGAACATTCCAGA ATTCATTGAAGGTGTCAAAGCCAGGAAACAAAAGCTCTCTGGTTTTGGACACCGAGTGTATAAAAACTATGATCCCAGAG CAAAGGTCCTAAGAAAACTGACTGAGGAAGTGTTTTCCATTGTTGGCCGGGATCCTCTTATCGAGATTGCAGTTGCCTTG GAGAAGATCGCTCTATCTGATGAATATTTCATCAAGAGGAAGCTTTATCCAAATGTTGACTTCTACTCTGGATTAATTTA TAGGGCCATGGGGTTTCCTCCTGAGTATTTCACAGTTTTATTTGCTATCCCTCGAATGGCGGGGTACTTGGCACATTGGA AAGAGTCCTTGGATGATCCTGATACAAAGATTATGAGGCCTCAACAGGTTTATGTTGGAGAATGGTTGCGTCATTATACA CCAATCAATAAAAGGACCGTATCAAGTGATGCTGATAAGCTTGGTCAGGTGACTACATCAAATGCCTCAAAGCGACGACT CGCTGGATCTGGGATGTAG
Protein sequence (LotjaGi1g1v0038100.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MSTDSESTTMLARGRLAMLTAHLLPSSYTETTTDHVLPHRLSAQSPPSTTLNGTLTIVDERTGKKYQVEVSQDGTVRASD FKKIATGKNDKGLKLYDPGYLNTAPVRSTISYIDGDEGILRYRGYPIEELAEKSTFVEVSYLIMYGSLPSESQLAEWNFA ISQHSAVPQGVLDIIQSMPHDAHPMGVLVNALSALSVFHPDANPALRGLDIYNSKEVRDKQIARVIGKITTIAAAVYLRM AGRPPVLPSNNLSYTENFLYMLDSLGNRSYKPNPRLTRALDIIFILHAEHEMNCSTSAVRHLASSGVDVYTAIAGAVGAL YGPLHGGANEAVLKMLSEIGTVENIPEFIEGVKARKQKLSGFGHRVYKNYDPRAKVLRKLTEEVFSIVGRDPLIEIAVAL EKIALSDEYFIKRKLYPNVDFYSGLIYRAMGFPPEYFTVLFAIPRMAGYLAHWKESLDDPDTKIMRPQQVYVGEWLRHYT PINKRTVSSDADKLGQVTTSNASKRRLAGSGM
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 15 | 15 | - | – | |
| Phobius | 1 | 29 | 29 | - | – | |
| PANTHER | 7 | 498 | 492 | 0.0 | – | |
| PANTHER | 7 | 498 | 492 | 0.0 | ||
| Phobius | 16 | 24 | 9 | - | – | |
| Phobius | 25 | 29 | 5 | - | – | |
| Phobius | 30 | 512 | 483 | - | – | |
| CDD | 73 | 481 | 409 | 0.0 | – | |
| SUPERFAMILY | 86 | 485 | 400 | 1.44E-143 | ||
| Pfam | 100 | 468 | 369 | 2.2E-134 | ||
| Gene3D | 110 | 468 | 359 | 1.6E-137 | ||
| PRINTS | 225 | 238 | 14 | 4.7E-45 | ||
| PRINTS | 279 | 294 | 16 | 4.7E-45 | ||
| PRINTS | 301 | 329 | 29 | 4.7E-45 | ||
| Gene3D | 328 | 433 | 106 | 1.6E-137 | ||
| PRINTS | 354 | 374 | 21 | 4.7E-45 | ||
| ProSitePatterns | 361 | 373 | 13 | - | ||
| PRINTS | 416 | 432 | 17 | 4.7E-45 | ||
| PRINTS | 436 | 450 | 15 | 4.7E-45 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Biological process | Tricarboxylic acid cycle | A nearly universal metabolic pathway in which the acetyl group of acetyl coenzyme A is effectively oxidized to two CO2 and four pairs of electrons are transferred to coenzymes. The acetyl group combines with oxaloacetate to form citrate, which undergoes successive transformations to isocitrate, 2-oxoglutarate, succinyl-CoA, succinate, fumarate, malate, and oxaloacetate again, thus completing the cycle. In eukaryotes the tricarboxylic acid is confined to the mitochondria. See also glyoxylate cycle. | ||
| Molecular function | Transferase activity, transferring acyl groups, acyl groups converted into alkyl on transfer | Catalysis of the transfer of an acyl group from one compound (donor) to another (acceptor), with the acyl group being converted into alkyl on transfer. |
Expression pattern of LotjaGi1g1v0038100.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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