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TREX

Transcript Explorer
for L. japonicus reference genomes

The Transcript Explorer tool can be used to search for candidate Lotus genes using user-defined keywords, or to comb a specific genomic interval—a combination of chromosome and position range—for genes/transcripts of interest.

Repeat Search

  • IPR002483
Separate each keyword, or gene/transcript ID, with a comma or tab. Spaces are not accepted as delimiters due to their potential use in boolean searches.
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We have found 9 results. Now displaying 1 of 1 with 50 rows per page. This search has taken 5.598s to perform.

Transcript Name Description Chr Start End Strand Domain predictions GO predictions
Lj3g3v0478170.1
n.a. Polyadenylate-binding protein 2-A [Medicago truncatula] gi|357457685|ref|XP_003599123.1| chr3 5533717 5546488 +
2 domain predictions
1 GO term
LotjaGi2g1v0319900.1
n.a. RNA-binding protein 25; TAIR: AT1G60200.2 splicing factor PWI domain-containing protein / RNA recognition motif (RRM)-containing protein; Swiss-Prot: sp|P49756|RBM25_HUMAN RNA-binding protein 25; TrEMBL-Plants: tr|A0A072UD88|A0A072UD88_MEDTR RNA recognition motif protein, putative; Found in the gene: LotjaGi2g1v0319900 LjG1.1_chr2 79469177 79475915 -
4 domain predictions
1 GO term
LotjaGi2g1v0319900.2
n.a. RNA-binding protein 25; TAIR: AT1G60200.1 splicing factor PWI domain-containing protein / RNA recognition motif (RRM)-containing protein; Swiss-Prot: sp|P49756|RBM25_HUMAN RNA-binding protein 25; TrEMBL-Plants: tr|G7K1E8|G7K1E8_MEDTR RNA recognition motif protein, putative; Found in the gene: LotjaGi2g1v0319900 LjG1.1_chr2 79469394 79475906 -
4 domain predictions
1 GO term
LotjaGi2g1v0319900.3
n.a. RNA-binding protein 25; TAIR: AT1G60200.2 splicing factor PWI domain-containing protein / RNA recognition motif (RRM)-containing protein; Swiss-Prot: sp|P49756|RBM25_HUMAN RNA-binding protein 25; TrEMBL-Plants: tr|A0A072UD88|A0A072UD88_MEDTR RNA recognition motif protein, putative; Found in the gene: LotjaGi2g1v0319900 LjG1.1_chr2 79469394 79475906 -
4 domain predictions
1 GO term
LotjaGi2g1v0319900.4
n.a. RNA-binding protein 25; TAIR: AT1G60200.2 splicing factor PWI domain-containing protein / RNA recognition motif (RRM)-containing protein; Swiss-Prot: sp|P49756|RBM25_HUMAN RNA-binding protein 25; TrEMBL-Plants: tr|A0A072UD88|A0A072UD88_MEDTR RNA recognition motif protein, putative; Found in the gene: LotjaGi2g1v0319900 LjG1.1_chr2 79469716 79476526 -
4 domain predictions
1 GO term
LotjaGi2g1v0319900.5
n.a. RNA-binding protein 25; TAIR: AT1G60200.1 splicing factor PWI domain-containing protein / RNA recognition motif (RRM)-containing protein; Swiss-Prot: sp|P49756|RBM25_HUMAN RNA-binding protein 25; TrEMBL-Plants: tr|G7K1E8|G7K1E8_MEDTR RNA recognition motif protein, putative; Found in the gene: LotjaGi2g1v0319900 LjG1.1_chr2 79469716 79476526 -
4 domain predictions
1 GO term
LotjaGi3g1v0059800.1
n.a. RNA binding family protein, putative; TAIR: AT3G12640.2 RNA binding (RRM/RBD/RNP motifs) family protein; Swiss-Prot: sp|Q9DDY9|PAB2A_XENLA Polyadenylate-binding protein 2-A; TrEMBL-Plants: tr|A0A1J7IG07|A0A1J7IG07_LUPAN Uncharacterized protein; Found in the gene: LotjaGi3g1v0059800 LjG1.1_chr3 6253458 6267167 +
2 domain predictions
1 GO term
LotjaGi3g1v0124000.1
n.a. RNA binding family protein, putative; TAIR: AT3G12640.2 RNA binding (RRM/RBD/RNP motifs) family protein; Swiss-Prot: sp|A6NDY0|EPAB2_HUMAN Embryonic polyadenylate-binding protein 2; TrEMBL-Plants: tr|A0A1J7IG07|A0A1J7IG07_LUPAN Uncharacterized protein; Found in the gene: LotjaGi3g1v0124000 LjG1.1_chr3 15145713 15155247 +
2 domain predictions
1 GO term
LotjaGi3g1v0490500.1
n.a. Serine/arginine repetitive matrix protein 1; TAIR: AT2G29210.1 splicing factor PWI domain-containing protein; Swiss-Prot: sp|Q5ZMJ9|SRRM1_CHICK Serine/arginine repetitive matrix protein 1; TrEMBL-Plants: tr|V7AGQ0|V7AGQ0_PHAVU Uncharacterized protein; Found in the gene: LotjaGi3g1v0490500 LjG1.1_chr3 90863180 90875916 +
4 domain predictions
1 GO term