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| Field | Value |
|---|---|
| Gene ID | LotjaGi2g1v0319900 |
| Transcript ID | LotjaGi2g1v0319900.1 |
| Related isoforms 4 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | RNA-binding protein 25; TAIR: AT1G60200.2 splicing factor PWI domain-containing protein / RNA recognition motif (RRM)-containing protein; Swiss-Prot: sp|P49756|RBM25_HUMAN RNA-binding protein 25; TrEMBL-Plants: tr|A0A072UD88|A0A072UD88_MEDTR RNA recognition motif protein, putative; Found in the gene: LotjaGi2g1v0319900 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr2:79469177..79475915) extracted from Lotus japonicus Gifu genome v1.2.
GGAAGAGAGAAAGAAAAAAAAAAGATAAATAGGAAGAGAATATGAGTTAAAAAAAAAAAGTGATATCTCATATCTGAATG AGTTAATCTCTTTACACGCTTGTTATAACTTGACCTAAACTACCAAAACTGAAACAGACGCAGTTCATTCTAGTAGATTC ATAGAGATCGCACCAACGAACCATCTAATCTTAAAACCAAAACCAATTTCACCTTTCAATCTCACTTTCACAAAACTCTC CTCCCTCTTCGATGGCGGATTCCGCCGCTTCTCCCGCCGCAACCCTAGACTCCGGACCTCCGAACTCCCTCCCCGATCCA CCTCCTCACTCCCAACCCTCATCTACGCCACTCGCCCCCAACCCTAATCCCAATCCACCCGCACCGTCGCTGCCTCCGCC TCCTACTCTCCTCTATTCGGCGGGGGCACCGCCGCAGCTCCCCACCGTCCTTCCCCCATCATTCCGCCCGCTGGCTCCGC AATTCTCTCCCCTGCCCAACCCCGGCGCATACCAAAACCCTACCGTTCCACCTCCCGGTGTGGCCACCGCAGCCGCGCAG CCTCCGTCGCAGATGCCGCATATGCAACCGATGATGTCGTATCAGGTTCCTCCCCGAGCTTATGCACCGATGCTGAATGG TTACGCCGCGCCTCCACAAGGAACCGTTCCTCCCACGGGTGGGTCATTCTTGAGTTTGTACTTGCATTCATTTATTTCCA TGCTTGTTCGTTTCGTTTAGTGCTTTGCGATGTGATTAGCTGTTTAATTGCGTGTGATGTTTACATTTGTGCTGGGAATT CTATGATGATCTGCTATTGAGTGCGTGTTGTAATGCGAAAAGAGCGTTGATTGGTAGCTGTTTTGTTTATTTAATGGGGA GGATTTGTTTTGGATGAGTTCGGAGCCATTTAGATAAGTAATTGATCCTTAGATTAAGGGGTATCGATGACCGGATGTTT TCTCCTACAGTGTCTTGATTGAATTCGGTGAGAAAGGTTGGAAGGCTTCCTATTGCTTACAGACACACCACCCCCTTCTA CAACTCATTTTTTGGTATGCACATAGTTTCTTGCTTGTCTTTTACTAGAATTTCGAAACCAAAGCATACACCGAGTTCGG TTCTGATGATGGAAAAAATAAATAAAAAGTTGCTCTTTTGTCAATCACTCAATCTAAATAATGTATGGTTGTGTCATGCT CATTTTAGTTGGCCACTTTCTGATAGTTATAAAGGTACTTTCAGAAGCCGGTCATATTTGCAACTGAATGCACGTTGGCC TTGTGTCATGAGGTATTGCAATCTTTTCATTCTCTCTAGCACAGTTTCATACTTTCATTCCATTTTTTAATCCTGCACCA TGGGCTGCTGTACAAAAAAGAATTTATAGTTCAACTAGAATTTTTTCTTAGTAAACCATGCATACATGAGATTATGAAAG TTACTACTTGCAATTGGTGGATGGGATAGTTTGAGAAGCCTGCTATGTTGCAAGTGGTTAAACAAAGGTAAGCACTTCCT ACACATCCGTGAATTTCAAAACTGGATAGTATTTCTTGTTGTTTTCTTCAGGTTATCATTTCAGCTGGTGATTGTTGGCT GTGCTGCCTTCTCTGTTATGCTTTTGATGTGTGGTAACAGCATAAAGTTGTTCTTGTCGCATTTTTTTCCACATATATCT CATGTTGTATTGATTAGTTTAGAATATATATTCACTCATGACCTTCTCTGATATATTTGCATAGATGTTTTTCTACTCTG TACAGGTATTCCACGTTACCCCCCACCTTATGGAACTATGCTCCGGCCGGTATATCCTCCACGCCCTCATGGAGCACTTA ATGTTGCTCCAGTATCACGCCCTCCTGTTGCAGGGATCCCTGCAGTTCGCCCTATTATTCCTCCTGTTGTCAGACCTATG ATTGCTCCCAGTGTTACTCCAGCTGAGAAGCAACAAATCACAGTTTACATTAGGATTGCACCAACTGTGGAGAATGAGTT CGTGCTTTCTCTCATTCAAGTAAATTTCTAAGTTTGTTCTCTTTTCCGGGGAGGGAGCAGGGTTTCGTTATTTTTCTCTT TACAACCTTTTATTACATCAATTATACAATTAGTATCTTTGAATCTTCGGTAAAATTTAAATACACTGATTCTGTTGTTT CTTTTTAGTTGTGTGGAAATATCAAGAGCTGGAAGCGTACTCAATATTTATCTAGTGGAACTCCTAAAAGTTTTGGGTTT TATGAATTTGAGTCTGCTGAAGGGGTTCTTCGGGCTATGCGCCTCCTTTCTAAATTGAATATTGATGGGCAAGAACTAGT GGTATGTCCTACTTTTTCTTTGTATATTTGTTCTTACTCCTCAATCTTTCTGGCATTTTTAATGAAATTTCACTTTAAAT ATATTCTTTCTATGCCTTAGTTTTTGGTTTAAGGTTTCGGTTTTTTGGGGAGGTTGGGGTCAGTTCGAAGGATTCATCAT TGATGGAGCTAAGACATTATTTATTTCCTGTTATACAGGGATATTAAACAGTTGGTTGATACCAGTATTATAATTTGTTT GCCTTCTGCCAATTATTTGGGACATTGAGCGAAAAATGAAATACTTCTTTAGTAATAACTTGAGTTTTAAAAAACAGTGA TTGCATGAAGTTTTTAAAGCTACCTCATGCATTTTCATTAATTCTGCCTTATGTTGGTATATAGCTTATGCTCTTGACTT AACTGTTTGGTTCCTGCAATGGAGGTTGTATATTGTTTAACTTTATGACCATTTTGGGTTTTTTGTAGTGAAAGCACAAA ATTGTCTTAAAAGCCATTTAGCATGAAATATTTTATTTTCCCTGGTTAGGCATCTAAGGTTCTCAGCTATTTATCGTTTA TACTTTTCTGATAGGTCAATGTGGATGAAGCTATGAAACAATATCTGGAGCGGTATGTTCAAAGAAAGACTGAGAACTCG ATTAAAAAGGAAGCTCAGACAGCTGGAGATGAAAAAGATGATGAAGGTACCAAACCTTCTGATGCAACTGATGCTGCAAA ACCTGATGTGGACCCCTCAAATAAAGAGGATAATGATTCAGGGAACAAGGAATCACATGATGTGAAAAACTTTGGGATTG TCACGGATGAAGATAGGGAAGCTGATCGAGATGCTTTAGTAAAGATTGCGAATATGATAGAGGAGAGGTTGATGACAAGA CCTTTGCCTCCACCACCTGCACTGCCAACCGTCGATGGTTCTGTGAGTTCAGTTCAAGAACAACCTGCTAAGACAAGAGA TGGAGAGTCTGATGTGGATACGAAGAAGAATGGTAAGGGAAAAAAATACTTTATGGGTATATCTAATATCTGTTGAGTGC TAACACCACAGAGCTATATTCTACCTCAGGACACATTTTCTTTTTCTTTTTCATTTTTGAACTATTATTCAGGTGCTTTG CTTTTCAAATTCTGTAGAAACAGGTGAAGATAAAAATGATAAAGAGGCAAACAGTGATAACCAACCAACTGGTGAACATG ATAGACCCGATACCCCTGATAGAAGGCATGATAGGAAAAGCAGAGAGAGAGACCACCGAGATAGGGAACTTAAACGAGAA AAAGAAAGGGAACTTGAAAGATATGAAAAAGAAGCTGAGCGGGAACGTATTCGGAAAGAGAGGGAACAGAGACGAAGGAC TGAGGAGGCTGAGCGTCAGTATGAATCATATTTGAAGGAATGGGAGTATAGAGAAAAAGAGAAAGAAAAAGAACGTCAGT GTGAAAAAGAGAAGGAGAAGGAAAGGGAACGCAAACGGAGAAAGGAGATACTTTATGATGAAGAGGATGAAGATGAGGAT TCTAGGAAGAGGTGGCGTAGAAATGTACTAGAGGAGAAGAGGAAGAGGAGGGTGCGTGAAAAGGAAGATGACTTGGCTGA CAAACAAAAAGAAGAGGAAGAAATTGTTGATGCCAAGAAGAGGGCTGAGGAGGATCAACGACAGAAGCAGCAGAGAGATG CTTTAAAGCTATTGTCAGAGCATGTAGTAAACAGTGGTGAGGAAACTATGGCTACTGAAGAGATTGCTAAGGAAGTAAAA TATATTGATGCTGAACAAGATACTGTAGCTCATTATAGTCGTGAAGGTCATATTGGTAATTTTTCATATATATATTTACA ATTTTATACTTTCTTCTCTCATTATTAAAGGTGGTGATGCTTTACATTACAGGTGATGGCAATTCAGTAAATGCTATCCA CGATGAATCTGCCATGGCATCTGTTGGTACAACTGATACACAGTCAGGTGGAAATGGTCCTTTGAAGAAGTTAGGATTTG GTCTAGTTGGCTCGGGGAAAAGAGCAGCTGTTGCTTCTGCTTTCCATGAAGAGGAGGAGGATGAGGCACACAAGGATAAA AAATTGAGGCCTTTGGTTCCAATTGATTACTCAACAGAGGAATTGCAGGCTGTTCAACCTACTATTTCTGGGTCAACACC GCCAAATTTGGTCGCAGCAGCAGAATTTGCAAAGCGTATATCCAGTACCAATTTCAAGGAAGATAAGCCGGATGGAGAAC GGGATAGAAGTAGGCGATCAAATGAGAAGTCTAACCACCGGGACAGGGACAGGAAAGATGAAGATGGCACTCACAACAGG GATGAAAACAAGGATAAATTTCCTGACCGTGCTAAAGATCGAGGTCATGGGTTTGAGAAATCTAAAACTCATGATAACAG GAGGCTTTTGGATGCAAAACAGTTAATTGATATGATACCAAAGACCAAGGAGGAGTTGTTTTCATATGAGATAGACTGGA CAGTGTATGACAAGGTATGTGAATCTTATCTGCTGATTTTGTTTTGTGTTTCTGTTTGGTCTTGAACTAATCAAAACGGT GTTGCCTAATCTCTTATTTGGCTTTGAGTCAGATTGGTAATACTTCAATAATATTTTGGGGCCATTAATGTAATTGTGCA AGGTTGTGGAAACAAAGTTTTCTGAATTACAATAGCTGGATTTGGAAGGAAGTGTTCTTGGGTCCTAGAAAACCATTTGA AGAGTCTACAAAATTTTATAAATGGACTTCCCAAAAATGACTAGAAAAGGAAGAGAGACCATTAAATTTCTTGATTATTT TATGCATTTTGGGTTTCAAGAAAGCCTAAATATATGACAAATGAATAGTTTCCTGAGAGAAATCCTCTGCTTCTTTTCGG AACTTAATCAATATTCTATTTATATTTTTTTTGAAATTTTATTATTTAAGAAGTAAGAACAGCCTTGCATTAATTATTTA AAATGATTTCATCCGATATTCTGTTGGGTGTAATGACTCTTGCACGTTAACGTTTATGTTCAAACTGCTTTTTGCCATGC ATACTCTGAGTATTTTGGTTTGTGTAGTCTGGAAATGTTAATGTAGTTTGTGTTCTAAATCTTTGGTTTTATGTAATGTT CTTTTTCAGCATCAGTTGCATGAAAGAATGAGACCGTGGATTTCTAAGAAAATCCAAGAGTTTTTGGGGGAAGAAGAAAA TACATTGATCGATTATATTGTTTCCAGTACACAAGAACATGTGAAAGCGTCCCAAATGCTTGAGCGTCTTCAGATCATTT TAGATGAGGAAGCTGAAATGTTCGTTCTCAAGATGTGGAGGATGCTTATCTTTGAAATAAAAAGGGTAGAGACAGGGCTT GCTTTGAGGTCAAAATCATGAACTGGTGACTGTTGTATGTTCCACCTTTTATGCTGAACTGATGTTTTTTATCACTGCCC CTGGGTATGTCTTCACCCTGAAGCTTAACATGGCTGCATAATATTTATAAACTTTTCGGTCTGTATTCCTTCTAGATTCA ATTAGTTATTTGGATAAACCCCCGTTTTCTTTATCCATGAGAATCCGGTGGCAATTTTTTGTCATGTGAATAGTTAGAAC TATGATTTGGGTTCATGATTGTCCTGGAGGCCTGGTTCTTTTGTTTATTTGTTTTGAAGAGAACAGTACTTGTTCGTTAA TCATGCATTTAGAGATACTGTCAGTAAAAGGATGGTATGCACCATTGCGGTTATGCATAGAGATTCCAGCCTTCCAAAAT GTTGGAAGAAAAAATAAAAATGAAAAATTTGAATGGCTGAGATTTCTATCCAATGGTCATGTAACTGAAGGTTCCATGCC AGTCAAGATGTAATTTGATACCGTCAAAATTGGAGTTTTTAACCCTCATACTTTTTATCCTTTGACTTTTTGGTCAGTCT CACATTGATGTTTGTTGATTCAGTAGCGTGATGTGCTCTAATTGTCATTGCCACTGCTCAAATTTTTTGCTTGTATTATT GCTCATTTTGCACGGTTTATAATCGTGAGCCTCCAGGCCTGTGAACCATGCCATTTCTGCTCATCGCCGTGCCTCCCTGC CCACCGCCGTGTCATCTCCAGGTGCCCCTCTCCTGTGATGTCTACTCCTCTCATGGTCTCTCTCTCTCTCTCTCTTCCCT TTTCTTTTTTCTCTATAATTCCAGTTAAGACGAGCCCCTCTCCTGTGATGTCTTCCTCTCTCACGGTCTCTCTCTCTTCC CTTTTCTTCTTTCTCTATCATTCAATTCCAGTTAAGGCACACATTTAACAAAAAAAAAGTCAAGAGAAAACAGAGTGAGT GATGTCAAGATGGTGGTTGCTTCTGTTTCTCGAGTTGGAGGAAATGGCAGAATTGTTAAAGAAGATTCTTTTGTGCTAAA ATAAAGAAATCAATGTGAG
CDS sequence (LotjaGi2g1v0319900.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGCTCCGGCCGGTATATCCTCCACGCCCTCATGGAGCACTTAATGTTGCTCCAGTATCACGCCCTCCTGTTGCAGGGAT CCCTGCAGTTCGCCCTATTATTCCTCCTGTTGTCAGACCTATGATTGCTCCCAGTGTTACTCCAGCTGAGAAGCAACAAA TCACAGTTTACATTAGGATTGCACCAACTGTGGAGAATGAGTTCGTGCTTTCTCTCATTCAATTGTGTGGAAATATCAAG AGCTGGAAGCGTACTCAATATTTATCTAGTGGAACTCCTAAAAGTTTTGGGTTTTATGAATTTGAGTCTGCTGAAGGGGT TCTTCGGGCTATGCGCCTCCTTTCTAAATTGAATATTGATGGGCAAGAACTAGTGGTCAATGTGGATGAAGCTATGAAAC AATATCTGGAGCGGTATGTTCAAAGAAAGACTGAGAACTCGATTAAAAAGGAAGCTCAGACAGCTGGAGATGAAAAAGAT GATGAAGGTACCAAACCTTCTGATGCAACTGATGCTGCAAAACCTGATGTGGACCCCTCAAATAAAGAGGATAATGATTC AGGGAACAAGGAATCACATGATGTGAAAAACTTTGGGATTGTCACGGATGAAGATAGGGAAGCTGATCGAGATGCTTTAG TAAAGATTGCGAATATGATAGAGGAGAGGTTGATGACAAGACCTTTGCCTCCACCACCTGCACTGCCAACCGTCGATGGT TCTGTGAGTTCAGTTCAAGAACAACCTGCTAAGACAAGAGATGGAGAGTCTGATGTGGATACGAAGAAGAATGAAACAGG TGAAGATAAAAATGATAAAGAGGCAAACAGTGATAACCAACCAACTGGTGAACATGATAGACCCGATACCCCTGATAGAA GGCATGATAGGAAAAGCAGAGAGAGAGACCACCGAGATAGGGAACTTAAACGAGAAAAAGAAAGGGAACTTGAAAGATAT GAAAAAGAAGCTGAGCGGGAACGTATTCGGAAAGAGAGGGAACAGAGACGAAGGACTGAGGAGGCTGAGCGTCAGTATGA ATCATATTTGAAGGAATGGGAGTATAGAGAAAAAGAGAAAGAAAAAGAACGTCAGTGTGAAAAAGAGAAGGAGAAGGAAA GGGAACGCAAACGGAGAAAGGAGATACTTTATGATGAAGAGGATGAAGATGAGGATTCTAGGAAGAGGTGGCGTAGAAAT GTACTAGAGGAGAAGAGGAAGAGGAGGGTGCGTGAAAAGGAAGATGACTTGGCTGACAAACAAAAAGAAGAGGAAGAAAT TGTTGATGCCAAGAAGAGGGCTGAGGAGGATCAACGACAGAAGCAGCAGAGAGATGCTTTAAAGCTATTGTCAGAGCATG TAGTAAACAGTGGTGAGGAAACTATGGCTACTGAAGAGATTGCTAAGGAAGTAAAATATATTGATGCTGAACAAGATACT GTAGCTCATTATAGTCGTGAAGGTCATATTGGTGATGGCAATTCAGTAAATGCTATCCACGATGAATCTGCCATGGCATC TGTTGGTACAACTGATACACAGTCAGGTGGAAATGGTCCTTTGAAGAAGTTAGGATTTGGTCTAGTTGGCTCGGGGAAAA GAGCAGCTGTTGCTTCTGCTTTCCATGAAGAGGAGGAGGATGAGGCACACAAGGATAAAAAATTGAGGCCTTTGGTTCCA ATTGATTACTCAACAGAGGAATTGCAGGCTGTTCAACCTACTATTTCTGGGTCAACACCGCCAAATTTGGTCGCAGCAGC AGAATTTGCAAAGCGTATATCCAGTACCAATTTCAAGGAAGATAAGCCGGATGGAGAACGGGATAGAAGTAGGCGATCAA ATGAGAAGTCTAACCACCGGGACAGGGACAGGAAAGATGAAGATGGCACTCACAACAGGGATGAAAACAAGGATAAATTT CCTGACCGTGCTAAAGATCGAGGTCATGGGTTTGAGAAATCTAAAACTCATGATAACAGGAGGCTTTTGGATGCAAAACA GTTAATTGATATGATACCAAAGACCAAGGAGGAGTTGTTTTCATATGAGATAGACTGGACAGTGTATGACAAGCATCAGT TGCATGAAAGAATGAGACCGTGGATTTCTAAGAAAATCCAAGAGTTTTTGGGGGAAGAAGAAAATACATTGATCGATTAT ATTGTTTCCAGTACACAAGAACATGTGAAAGCGTCCCAAATGCTTGAGCGTCTTCAGATCATTTTAGATGAGGAAGCTGA AATGTTCGTTCTCAAGATGTGGAGGATGCTTATCTTTGAAATAAAAAGGGTAGAGACAGGGCTTGCTTTGAGGTCAAAAT CATGA
Protein sequence (LotjaGi2g1v0319900.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MLRPVYPPRPHGALNVAPVSRPPVAGIPAVRPIIPPVVRPMIAPSVTPAEKQQITVYIRIAPTVENEFVLSLIQLCGNIK SWKRTQYLSSGTPKSFGFYEFESAEGVLRAMRLLSKLNIDGQELVVNVDEAMKQYLERYVQRKTENSIKKEAQTAGDEKD DEGTKPSDATDAAKPDVDPSNKEDNDSGNKESHDVKNFGIVTDEDREADRDALVKIANMIEERLMTRPLPPPPALPTVDG SVSSVQEQPAKTRDGESDVDTKKNETGEDKNDKEANSDNQPTGEHDRPDTPDRRHDRKSRERDHRDRELKREKERELERY EKEAERERIRKEREQRRRTEEAERQYESYLKEWEYREKEKEKERQCEKEKEKERERKRRKEILYDEEDEDEDSRKRWRRN VLEEKRKRRVREKEDDLADKQKEEEEIVDAKKRAEEDQRQKQQRDALKLLSEHVVNSGEETMATEEIAKEVKYIDAEQDT VAHYSREGHIGDGNSVNAIHDESAMASVGTTDTQSGGNGPLKKLGFGLVGSGKRAAVASAFHEEEEDEAHKDKKLRPLVP IDYSTEELQAVQPTISGSTPPNLVAAAEFAKRISSTNFKEDKPDGERDRSRRSNEKSNHRDRDRKDEDGTHNRDENKDKF PDRAKDRGHGFEKSKTHDNRRLLDAKQLIDMIPKTKEELFSYEIDWTVYDKHQLHERMRPWISKKIQEFLGEEENTLIDY IVSSTQEHVKASQMLERLQIILDEEAEMFVLKMWRMLIFEIKRVETGLALRSKS
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 774 | 774 | 0.0 | – | |
| PANTHER | 1 | 774 | 774 | 0.0 | – | |
| SUPERFAMILY | 44 | 131 | 88 | 1.63E-8 | ||
| Gene3D | 48 | 162 | 115 | 3.3E-7 | ||
| ProSiteProfiles | 54 | 131 | 78 | 9.217 | ||
| SMART | 55 | 127 | 73 | 1.5E-5 | ||
| CDD | 55 | 136 | 82 | 4.34323E-30 | ||
| MobiDBLite | 147 | 203 | 57 | - | – | |
| MobiDBLite | 224 | 344 | 121 | - | – | |
| MobiDBLite | 251 | 344 | 94 | - | – | |
| Coils | 303 | 376 | 74 | - | – | |
| MobiDBLite | 356 | 395 | 40 | - | – | |
| Coils | 403 | 452 | 50 | - | – | |
| MobiDBLite | 408 | 444 | 37 | - | – | |
| MobiDBLite | 595 | 657 | 63 | - | – | |
| Gene3D | 652 | 770 | 119 | 3.4E-41 | – | |
| ProSiteProfiles | 677 | 774 | 98 | 37.043 | ||
| SMART | 690 | 763 | 74 | 8.4E-32 | ||
| SUPERFAMILY | 695 | 760 | 66 | 7.72E-7 | ||
| Pfam | 696 | 760 | 65 | 2.0E-14 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Nucleic acid binding | Interacting selectively and non-covalently with any nucleic acid. | ||
| Biological process | MRNA processing | Any process involved in the conversion of a primary mRNA transcript into one or more mature mRNA(s) prior to translation into polypeptide. |
Expression pattern of LotjaGi2g1v0319900.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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