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| Field | Value |
|---|---|
| Gene ID | LotjaGi5g1v0207000 |
| Transcript ID | LotjaGi5g1v0207000.2 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | ER membrane protein complex subunit 3; TAIR: AT4G12590.1 ER membrane protein complex subunit-like protein (Protein of unknown function DUF106, transmembrane); Swiss-Prot: sp|Q7SXW4|EMC3_DANRE ER membrane protein complex subunit 3; TrEMBL-Plants: tr|I3S7X8|I3S7X8_LOTJA Uncharacterized protein; Found in the gene: LotjaGi5g1v0207000 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr5:50901248..50905828) extracted from Lotus japonicus Gifu genome v1.2.
ATGGCAGAAGATCTGGTGCTGGATACTGCAATCAGAGACTGGGTGCTGATCCCTCTCTCCGTGGTTATGGTTCTCATTGG CGTGCTCCGTTATTTTGTTTCGAAGCTTATGCGCTCTTCCCAAACCCCTGATGCCAAAATTGTTAAAGAAGGGTATTTCC TCAACCTCAAGCTTAATTCATATGTAGCTGGTTTTGTTTTTGTTTTTAATTTGATATTGGATTGATGCTGTGGTGTTGAT AATACAGGCAAGTGATTCTTAGAGCTCGGAACTTACGGACCGGAGCAAATTTTATTCCCTCAAAGGCTTTTCGTGCTCGC AAAGTTTATTATTGTAACGAGGTTTGTTTGCTTAGTCTATATTCTAGTGTGCCAGCAGGCTTATTTGTAATTGTATGGTT CTTGATCGGGAGAAAATTGAAGTTTCATTACACTGTCTGTTATTGTGGGGGATGGGCTATCTTGTGGGGTAATTGATTCA GCTATTGACCTATATGCCTTGTGAGGTTTCTTGGCAAGGACTTCTATGCTTGTTTGTGCTCAAATTTTGTTTCTATGTAT CCTTAAAGGGTTGATGTTGTTAATAATATAGAGAAAGGGAGTGCGTGCGTGTGTTACTGAGAAATGTGTGATTTTTTGTT CTGAACTGTGTAACACAGTTTAGAACTGTGTTTCTGATTTTTTGTAACACAGTTCAGAACTAGGCCCGAGGGGCATTCAG CCCTATATGGCTTGGTTCAGCTTGCATACAAGCTGCTTATCAGTAGCATCTGTTAGAAGTCCCGCATTGGCTAGAGATAG AGCATAGATAGCCTTTATAAGGGTAGTGCAAACCACAACTCTTGAGTATAGGCCTTCCAATTTCTAATAGCATCAAACCC CAGTGGTTGGCTCATGTAGACATCTTCTTCTAGGAAGACATTGTTCACATCAATTTGTTGAAGAGGCCAGTCATTGGTGA GTACCAGTGTAAAGATGATTCTCACAGTTACTGGTTTAGTGACCGGAGAAAATGTTCCAAAATAGTCACAGCCAACTTGT TGATGGAATCCCCTGACCACTAGTCTGGCCCTGTACTTGTTAATGGTGCCATTCATACTCTCCTTGAACCTAAATACCTA CTTGCATCCAACAGGGAGCCTGCTGGCTTGTAAAGATAATAGAGACTAGGTATTGTTAGCAATTAAAGCATCAAATGCAG CTTGCATTGCTGCATTGCAATTAGGCAAAGTGAAGGCTTGCTTAACTAAGTTAGTTCTAGTTGTGAAGAAGAGGGTAGGC TGTCTAGGATGAATTGATTTGGATTTTGGTTCAACGATACCATATTTGGATTTTGGACCTAGTCCATAGGATGAATTGAT TTTGTGATAGGAGGAATTGGGATGGGTGGATGGACTAGAGTGAGAAGAGAGTGAAGGTGAAGAGGATGAAGCTGCTGTAC TACTTGACACAAAGCCAGGGCTAGAAATTCGTGACTGAGGAGCAGTGACTAGTGACCCATTAAGATGTATTTCCCGACTG TTATGGATTTGTTATGCCCAAAGGAAGGGAGACATGGTTGCTAGGTGGAGGGTGATGGTTCTAAGATAAGGCAGTGTTCT GAGATATGTACATATAGGGGAATTTATATTCATTAATTACAAAATCTTTAAAAATAGTAAGTTTACCATTCAAGGTAAGA CATTTTTAACCCTTGTGGAAAGGAGAGTACCTTAGAATTTTACACTCTTAAGGATCGAAACTGAAGTTTATGGTGATTTT AAGGACACATAAACCGATAGCAAGTGCAACCAAATACCTTAAATAGGCAGGGAGTTGATTGTGGAGAGTATGAAATGGAA TGACACATTTATGAGACAGATGGAATGCATTTAATGAGGAATGCAGCTGTTTGTAGTTGTACTGCCTGATCCCAAAATTT GAGTGGGAGTGATGCTTACGAGAGTAAAGCTAAACCAACTTCAACTATATGCCTATGCTTCCTTTTCCACTACCCTATTC TGATGGTGAGTGTGTGGATGAGTGAGGTGATGAACGATGCCGTGAGGCGAGATGTTGGATGAGAAACAAAATTCCCCTCC GTGTCAGTTTGAAGGGATTTGACCCTTTTTACGTGCTCATACAGCAAGATGCACAAAAAATCAAACTCATGCTTATTAGA AATTTGAATATTACTCAACTTTGATACATGCTGTAAAAAGCAGATTGTGGGGGTCCAATAGTAGATGCTACAACATATAG GGATGGTAGATGTATTTAGAGTGGGAGATACGGGTATAGTATTGCTCACAATAGTATTGGAAACTGCAGTATTTAGTATT TACAGTTGGATGGCACCTAAGGATGTGGTGACCATAGAACATCCTTGCCTGAACATAAGGGTTGGATGTTGAAGGTTGAC AGAGACAATAGGTTGGGAAAGATTTAGAATCCATCCTTTCCTACGCAGCCTGTAAGCAAATTATGATTGGTAGCCTATGA TTCGACAAAGCAAGTAGAAGGGTGAAATTCCAAATAGACTGAATTATCACGAGTAAATTTATGTACATTGACCAAATTTT TAGCAAGAGATGGGGCTAAGAGATTGTTCTGGGTTAGATTAACAGAAGATTGAACTTAGTCCGCCAAGCGGAACTGTAAC TGTAGGACAAATGCCCTGTGACTAAGAGAGGGAAGTCATAATTGGATTAAGAGATTGCTGTAGATACCATGTTAAGAATC TAGACAGTGTGTGTTTCTGAGAAATGTGTAATTTGTTATCTAAACAGATTAGGGTTACATGTGAGTATATATGAGGCCTG ATCTAGCTTTCTGTTCAAGCAGCTATCAGGCAGAACTAACTTCAACAGAATGCCAACTACTCCAACCGAATCTAATGGAA AGCAGTTGCTGCTATTTGCTAAGTGTAAACGTTGACTGCTAATGTGAACCAAAAGTACTCTGCACTGTACTTATAGAATA GATTTCACATTTGACTTTTTTACAACAGCTCTAAACTCATCAGAAGTCTATGATGAGCTTTTTGTAGTATCTTACATGAT TAATTGATTACTTACCTATCCATTTCAACAGTGAACTAATGCTTTGTCTATTTTCATTGAAGGAAAAAGGTCTGTTGTTT GTTCCAAAGGGCCAAGCCCAGAATCCACAAGCACAGATGTTCTCTGATCCAAACATGGCCATGGATATGATGAAGAAAAA CCTTTCAATGATCATTCCTCAGGTGATGAAATTAGTGTTTGTTTGACAGTACTTGGCATTAGATTTTGGATCATAGTCCT TGTTATTGGACCTATTATGAGATGCCTTACTAACTAGTGTTGTCTACCCTAATTGGACAGACTCTTACTTTTGCTTGGGT GAACTTCTTCTTTTCTGGATTTGTGGCAGGTATTTCTTTACACTTGCTTTCCTTGTTACTTACCGGGTGATTAGCATATT TCATCTTTGCATGGATTCATATTCTTCAATATCTGTACTTGGATTCCTTATATTATTTACCTCTTTTTTTTTCTTTTAAA ACTATCTTGCAGCCAAGATACCCTTTCCACTTACACAGAGGTTTAGGTCAATGTTACAGAATGGAATAGACCTTAGCACA GTAGATGTTAGCTATGTCAGCAGTCGCTCTTGGTAATCTTCTTTTTCATGGATCTCTACTTGTTTCCCTCTTACTCAGGT TTAACTGTCAAGATTGCATTTCAGGTACTTCCTCAATCTGTTTGGATTAAGAGGATTGTTTAGTCTCATCTTGGGAGAAG AAAATGGTTAGTATTTAATGACTTGAAAGTTGAGTATTTATATGCCTATTTTTAATTATCTTATCAATTTCATGAATACG AATTTTACTACTTTTCAGTATTTTGTCTATTATTCCTTTATAACTGGGGACTTGGATAGACAACAGTCAGAAATTATGTG TGTTGTTTTTTATGCAGCTGTAGATGATACACAAAGAATGATGCAAATGGGTGGATTTGGATTTGATCCTTCAAAGGTAC AAATACTAGTTCTTTACTGTAGTCATATATTTGATGATTAATCGATGAAAATCAAATTTGATTCCATTCCATGATTAGTT GACCCCCCCCCCCCCATCCCCTGTTTTGCTGTTCCGGCCATGCCACAAGTAAAAACTTTCAAGAGCTGGCGTAGTATATG ACTAGTTTTTCACTAATGGTGAAAGTCAGGCAAACTTGAACTCTCTTAACACAGAAACAAAATGTAGGTGCACTGTACTA AGTGTATAAGAAAAGGGTAAGAGAATAGTCTGAGAATTTGACTATTCTCATCGGGATTAGATGTACAAGGTGAGGGTAGG GTGCACTTCACCTTAGCTTTGCAGTTTCGTCTTTAATTTTGACAGATACAAATATAGTGATATTTGGATTGAAGTTTGCA AAATTGATTTTGAATGAACTTGATTTTCAAAGCAATTCCCATATCTGACTCTTCTTTTTTCTAATCTTATTTTCAGGGTC TAAGTGCTGAGAAAGACAATCTTGACATAACGCAGCATGAATGGGCATTACCAAATTTCGAGCAGCGTGCTGAAGCTGTG TTGAAGAAACTCATCAATTAA
CDS sequence (LotjaGi5g1v0207000.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCAGAAGATCTGGTGCTGGATACTGCAATCAGAGACTGGGTGCTGATCCCTCTCTCCGTGGTTATGGTTCTCATTGG CGTGCTCCGTTATTTTGTTTCGAAGCTTATGCGCTCTTCCCAAACCCCTGATGCCAAAATTGTTAAAGAAGGGCAAGTGA TTCTTAGAGCTCGGAACTTACGGACCGGAGCAAATTTTATTCCCTCAAAGGCTTTTCGTGCTCGCAAAGTTTATTATTGT AACGAGGAAAAAGGTCTGTTGTTTGTTCCAAAGGGCCAAGCCCAGAATCCACAAGCACAGATGTTCTCTGATCCAAACAT GGCCATGGATATGATGAAGAAAAACCTTTCAATGATCATTCCTCAGACTCTTACTTTTGCTTGGGTGAACTTCTTCTTTT CTGGATTTGTGGCAGCCAAGATACCCTTTCCACTTACACAGAGGTTTAGGTCAATGTTACAGAATGGAATAGACCTTAGC ACAGTAGATGTTAGCTATGTCAGCAGTCGCTCTTGGTACTTCCTCAATCTGTTTGGATTAAGAGGATTGTTTAGTCTCAT CTTGGGAGAAGAAAATGCTGTAGATGATACACAAAGAATGATGCAAATGGGTGGATTTGGATTTGATCCTTCAAAGGGTC TAAGTGCTGAGAAAGACAATCTTGACATAACGCAGCATGAATGGGCATTACCAAATTTCGAGCAGCGTGCTGAAGCTGTG TTGAAGAAACTCATCAATTAA
Protein sequence (LotjaGi5g1v0207000.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MAEDLVLDTAIRDWVLIPLSVVMVLIGVLRYFVSKLMRSSQTPDAKIVKEGQVILRARNLRTGANFIPSKAFRARKVYYC NEEKGLLFVPKGQAQNPQAQMFSDPNMAMDMMKKNLSMIIPQTLTFAWVNFFFSGFVAAKIPFPLTQRFRSMLQNGIDLS TVDVSYVSSRSWYFLNLFGLRGLFSLILGEENAVDDTQRMMQMGGFGFDPSKGLSAEKDNLDITQHEWALPNFEQRAEAV LKKLIN
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 243 | 243 | 6.4E-119 | ||
| PIRSF | 1 | 245 | 245 | 3.9E-86 | ||
| Phobius | 1 | 13 | 13 | - | – | |
| PANTHER | 1 | 243 | 243 | 6.4E-119 | – | |
| Pfam | 4 | 192 | 189 | 6.7E-53 | ||
| SMART | 4 | 192 | 189 | 2.5E-81 | ||
| TMHMM | 10 | 32 | 23 | - | – | |
| Phobius | 14 | 33 | 20 | - | – | |
| Phobius | 34 | 118 | 85 | - | – | |
| TMHMM | 116 | 138 | 23 | - | – | |
| Phobius | 119 | 143 | 25 | - | – | |
| Phobius | 144 | 170 | 27 | - | – | |
| Phobius | 171 | 189 | 19 | - | – | |
| Phobius | 190 | 246 | 57 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Cellular component | Membrane | A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. |
Expression pattern of LotjaGi5g1v0207000.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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