Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message
| Field | Value |
|---|---|
| Gene ID | LotjaGi5g1v0207000 |
| Transcript ID | LotjaGi5g1v0207000.1 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | ER membrane protein complex subunit 3; TAIR: AT4G12590.1 ER membrane protein complex subunit-like protein (Protein of unknown function DUF106, transmembrane); Swiss-Prot: sp|Q7SXW4|EMC3_DANRE ER membrane protein complex subunit 3; TrEMBL-Plants: tr|I3S7X8|I3S7X8_LOTJA Uncharacterized protein; Found in the gene: LotjaGi5g1v0207000 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr5:50900873..50906223) extracted from Lotus japonicus Gifu genome v1.2.
TTTTCTCTAAATTGAATAATTAAATTAAAAATACAAATATTAAAGATAAACGTGATTGATGATGTAAAACTATCTACTAA CTAATTAAATCGGCATATGCATAGCTTTCATTCAAGTTTGAGGAGTAAACTCTGAAAACGGATCGTATTGAAACGGGGTT GCCGGCTGTGTGCCACTACCTGCTTCCCATTCCTAGTTCCCGGTCTTTCCTTCCTCCATCGCCCAATTTAGGGTTCGCAG AGGTGAGTCATTCTCTTCAATCTTCCTCCTTGTCACGCATCGCAATTCCTCAACAGTCGGTTCGTGAAATCGAATCAGAT ACAATCGAATCAAATTCACTGTGTTTCTAATTTTTGATGGGCAGGTATTACATCAATGGCAGAAGATCTGGTGCTGGATA CTGCAATCAGAGACTGGGTGCTGATCCCTCTCTCCGTGGTTATGGTTCTCATTGGCGTGCTCCGTTATTTTGTTTCGAAG CTTATGCGCTCTTCCCAAACCCCTGATGCCAAAATTGTTAAAGAAGGGTATTTCCTCAACCTCAAGCTTAATTCATATGT AGCTGGTTTTGTTTTTGTTTTTAATTTGATATTGGATTGATGCTGTGGTGTTGATAATACAGGCAAGTGATTCTTAGAGC TCGGAACTTACGGACCGGAGCAAATTTTATTCCCTCAAAGGCTTTTCGTGCTCGCAAAGTTTATTATTGTAACGAGGTTT GTTTGCTTAGTCTATATTCTAGTGTGCCAGCAGGCTTATTTGTAATTGTATGGTTCTTGATCGGGAGAAAATTGAAGTTT CATTACACTGTCTGTTATTGTGGGGGATGGGCTATCTTGTGGGGTAATTGATTCAGCTATTGACCTATATGCCTTGTGAG GTTTCTTGGCAAGGACTTCTATGCTTGTTTGTGCTCAAATTTTGTTTCTATGTATCCTTAAAGGGTTGATGTTGTTAATA ATATAGAGAAAGGGAGTGCGTGCGTGTGTTACTGAGAAATGTGTGATTTTTTGTTCTGAACTGTGTAACACAGTTTAGAA CTGTGTTTCTGATTTTTTGTAACACAGTTCAGAACTAGGCCCGAGGGGCATTCAGCCCTATATGGCTTGGTTCAGCTTGC ATACAAGCTGCTTATCAGTAGCATCTGTTAGAAGTCCCGCATTGGCTAGAGATAGAGCATAGATAGCCTTTATAAGGGTA GTGCAAACCACAACTCTTGAGTATAGGCCTTCCAATTTCTAATAGCATCAAACCCCAGTGGTTGGCTCATGTAGACATCT TCTTCTAGGAAGACATTGTTCACATCAATTTGTTGAAGAGGCCAGTCATTGGTGAGTACCAGTGTAAAGATGATTCTCAC AGTTACTGGTTTAGTGACCGGAGAAAATGTTCCAAAATAGTCACAGCCAACTTGTTGATGGAATCCCCTGACCACTAGTC TGGCCCTGTACTTGTTAATGGTGCCATTCATACTCTCCTTGAACCTAAATACCTACTTGCATCCAACAGGGAGCCTGCTG GCTTGTAAAGATAATAGAGACTAGGTATTGTTAGCAATTAAAGCATCAAATGCAGCTTGCATTGCTGCATTGCAATTAGG CAAAGTGAAGGCTTGCTTAACTAAGTTAGTTCTAGTTGTGAAGAAGAGGGTAGGCTGTCTAGGATGAATTGATTTGGATT TTGGTTCAACGATACCATATTTGGATTTTGGACCTAGTCCATAGGATGAATTGATTTTGTGATAGGAGGAATTGGGATGG GTGGATGGACTAGAGTGAGAAGAGAGTGAAGGTGAAGAGGATGAAGCTGCTGTACTACTTGACACAAAGCCAGGGCTAGA AATTCGTGACTGAGGAGCAGTGACTAGTGACCCATTAAGATGTATTTCCCGACTGTTATGGATTTGTTATGCCCAAAGGA AGGGAGACATGGTTGCTAGGTGGAGGGTGATGGTTCTAAGATAAGGCAGTGTTCTGAGATATGTACATATAGGGGAATTT ATATTCATTAATTACAAAATCTTTAAAAATAGTAAGTTTACCATTCAAGGTAAGACATTTTTAACCCTTGTGGAAAGGAG AGTACCTTAGAATTTTACACTCTTAAGGATCGAAACTGAAGTTTATGGTGATTTTAAGGACACATAAACCGATAGCAAGT GCAACCAAATACCTTAAATAGGCAGGGAGTTGATTGTGGAGAGTATGAAATGGAATGACACATTTATGAGACAGATGGAA TGCATTTAATGAGGAATGCAGCTGTTTGTAGTTGTACTGCCTGATCCCAAAATTTGAGTGGGAGTGATGCTTACGAGAGT AAAGCTAAACCAACTTCAACTATATGCCTATGCTTCCTTTTCCACTACCCTATTCTGATGGTGAGTGTGTGGATGAGTGA GGTGATGAACGATGCCGTGAGGCGAGATGTTGGATGAGAAACAAAATTCCCCTCCGTGTCAGTTTGAAGGGATTTGACCC TTTTTACGTGCTCATACAGCAAGATGCACAAAAAATCAAACTCATGCTTATTAGAAATTTGAATATTACTCAACTTTGAT ACATGCTGTAAAAAGCAGATTGTGGGGGTCCAATAGTAGATGCTACAACATATAGGGATGGTAGATGTATTTAGAGTGGG AGATACGGGTATAGTATTGCTCACAATAGTATTGGAAACTGCAGTATTTAGTATTTACAGTTGGATGGCACCTAAGGATG TGGTGACCATAGAACATCCTTGCCTGAACATAAGGGTTGGATGTTGAAGGTTGACAGAGACAATAGGTTGGGAAAGATTT AGAATCCATCCTTTCCTACGCAGCCTGTAAGCAAATTATGATTGGTAGCCTATGATTCGACAAAGCAAGTAGAAGGGTGA AATTCCAAATAGACTGAATTATCACGAGTAAATTTATGTACATTGACCAAATTTTTAGCAAGAGATGGGGCTAAGAGATT GTTCTGGGTTAGATTAACAGAAGATTGAACTTAGTCCGCCAAGCGGAACTGTAACTGTAGGACAAATGCCCTGTGACTAA GAGAGGGAAGTCATAATTGGATTAAGAGATTGCTGTAGATACCATGTTAAGAATCTAGACAGTGTGTGTTTCTGAGAAAT GTGTAATTTGTTATCTAAACAGATTAGGGTTACATGTGAGTATATATGAGGCCTGATCTAGCTTTCTGTTCAAGCAGCTA TCAGGCAGAACTAACTTCAACAGAATGCCAACTACTCCAACCGAATCTAATGGAAAGCAGTTGCTGCTATTTGCTAAGTG TAAACGTTGACTGCTAATGTGAACCAAAAGTACTCTGCACTGTACTTATAGAATAGATTTCACATTTGACTTTTTTACAA CAGCTCTAAACTCATCAGAAGTCTATGATGAGCTTTTTGTAGTATCTTACATGATTAATTGATTACTTACCTATCCATTT CAACAGTGAACTAATGCTTTGTCTATTTTCATTGAAGGAAAAAGGTCTGTTGTTTGTTCCAAAGGGCCAAGCCCAGAATC CACAAGCACAGATGTTCTCTGATCCAAACATGGCCATGGATATGATGAAGAAAAACCTTTCAATGATCATTCCTCAGGTG ATGAAATTAGTGTTTGTTTGACAGTACTTGGCATTAGATTTTGGATCATAGTCCTTGTTATTGGACCTATTATGAGATGC CTTACTAACTAGTGTTGTCTACCCTAATTGGACAGACTCTTACTTTTGCTTGGGTGAACTTCTTCTTTTCTGGATTTGTG GCAGGTATTTCTTTACACTTGCTTTCCTTGTTACTTACCGGGTGATTAGCATATTTCATCTTTGCATGGATTCATATTCT TCAATATCTGTACTTGGATTCCTTATATTATTTACCTCTTTTTTTTTCTTTTAAAACTATCTTGCAGCCAAGATACCCTT TCCACTTACACAGAGGTTTAGGTCAATGTTACAGAATGGAATAGACCTTAGCACAGTAGATGTTAGCTATGTCAGCAGTC GCTCTTGGTAATCTTCTTTTTCATGGATCTCTACTTGTTTCCCTCTTACTCAGGTTTAACTGTCAAGATTGCATTTCAGG TACTTCCTCAATCTGTTTGGATTAAGAGGATTGTTTAGTCTCATCTTGGGAGAAGAAAATGGTTAGTATTTAATGACTTG AAAGTTGAGTATTTATATGCCTATTTTTAATTATCTTATCAATTTCATGAATACGAATTTTACTACTTTTCAGTATTTTG TCTATTATTCCTTTATAACTGGGGACTTGGATAGACAACAGTCAGAAATTATGTGTGTTGTTTTTTATGCAGCTGTAGAT GATACACAAAGAATGATGCAAATGGGTGGATTTGGATTTGATCCTTCAAAGGTACAAATACTAGTTCTTTACTGTAGTCA TATATTTGATGATTAATCGATGAAAATCAAATTTGATTCCATTCCATGATTAGTTGACCCCCCCCCCCCCATCCCCTGTT TTGCTGTTCCGGCCATGCCACAAGTAAAAACTTTCAAGAGCTGGCGTAGTATATGACTAGTTTTTCACTAATGGTGAAAG TCAGGCAAACTTGAACTCTCTTAACACAGAAACAAAATGTAGGTGCACTGTACTAAGTGTATAAGAAAAGGGTAAGAGAA TAGTCTGAGAATTTGACTATTCTCATCGGGATTAGATGTACAAGGTGAGGGTAGGGTGCACTTCACCTTAGCTTTGCAGT TTCGTCTTTAATTTTGACAGATACAAATATAGTGATATTTGGATTGAAGTTTGCAAAATTGATTTTGAATGAACTTGATT TTCAAAGCAATTCCCATATCTGACTCTTCTTTTTTCTAATCTTATTTTCAGGGTCTAAGTGCTGAGAAAGACAATCTTGA CATAACGCAGCATGAATGGGCATTACCAAATTTCGAGCAGCGTGCTGAAGCTGTGTTGAAGAAACTCATCAATTAAACAA TGTTATGGAAGCTGTTTTTAACTGCTTGCGTTAGAAAGATACACTGTTTTTGGTCTACGCGATAGAAAGATAAACTTTTG CATTCTATTGTTGCTGTTGGAGCTTTACCAGATATTGAAGATCATGTAGACTGTAGAGACAATGAGTGTAATCTTGAACC TGAACACCTTTTAATTTAATTATAAAAAGTTGTCACGCTTTTGTGGAAACCAGAACTCAAATTATTCACTCTATTTCTCA TAATCATAATGCCCATAACCACAAGAAGCATGAAGACTTCCCCTGAGATATGTTTGAAGGCCTAATGTAGCTATAAATTT TTGAGAAATGCTAGCAACAGAATCTATTCTTTTAAAGACACACTTTAATACTCTCACTAAGAACATTCTAT
CDS sequence (LotjaGi5g1v0207000.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCAGAAGATCTGGTGCTGGATACTGCAATCAGAGACTGGGTGCTGATCCCTCTCTCCGTGGTTATGGTTCTCATTGG CGTGCTCCGTTATTTTGTTTCGAAGCTTATGCGCTCTTCCCAAACCCCTGATGCCAAAATTGTTAAAGAAGGGCAAGTGA TTCTTAGAGCTCGGAACTTACGGACCGGAGCAAATTTTATTCCCTCAAAGGCTTTTCGTGCTCGCAAAGTTTATTATTGT AACGAGGAAAAAGGTCTGTTGTTTGTTCCAAAGGGCCAAGCCCAGAATCCACAAGCACAGATGTTCTCTGATCCAAACAT GGCCATGGATATGATGAAGAAAAACCTTTCAATGATCATTCCTCAGACTCTTACTTTTGCTTGGGTGAACTTCTTCTTTT CTGGATTTGTGGCAGCCAAGATACCCTTTCCACTTACACAGAGGTTTAGGTCAATGTTACAGAATGGAATAGACCTTAGC ACAGTAGATGTTAGCTATGTCAGCAGTCGCTCTTGGTACTTCCTCAATCTGTTTGGATTAAGAGGATTGTTTAGTCTCAT CTTGGGAGAAGAAAATGCTGTAGATGATACACAAAGAATGATGCAAATGGGTGGATTTGGATTTGATCCTTCAAAGGGTC TAAGTGCTGAGAAAGACAATCTTGACATAACGCAGCATGAATGGGCATTACCAAATTTCGAGCAGCGTGCTGAAGCTGTG TTGAAGAAACTCATCAATTAA
Protein sequence (LotjaGi5g1v0207000.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MAEDLVLDTAIRDWVLIPLSVVMVLIGVLRYFVSKLMRSSQTPDAKIVKEGQVILRARNLRTGANFIPSKAFRARKVYYC NEEKGLLFVPKGQAQNPQAQMFSDPNMAMDMMKKNLSMIIPQTLTFAWVNFFFSGFVAAKIPFPLTQRFRSMLQNGIDLS TVDVSYVSSRSWYFLNLFGLRGLFSLILGEENAVDDTQRMMQMGGFGFDPSKGLSAEKDNLDITQHEWALPNFEQRAEAV LKKLIN
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 243 | 243 | 6.4E-119 | ||
| PIRSF | 1 | 245 | 245 | 3.9E-86 | ||
| Phobius | 1 | 13 | 13 | - | – | |
| PANTHER | 1 | 243 | 243 | 6.4E-119 | – | |
| Pfam | 4 | 192 | 189 | 6.7E-53 | ||
| SMART | 4 | 192 | 189 | 2.5E-81 | ||
| TMHMM | 10 | 32 | 23 | - | – | |
| Phobius | 14 | 33 | 20 | - | – | |
| Phobius | 34 | 118 | 85 | - | – | |
| TMHMM | 116 | 138 | 23 | - | – | |
| Phobius | 119 | 143 | 25 | - | – | |
| Phobius | 144 | 170 | 27 | - | – | |
| Phobius | 171 | 189 | 19 | - | – | |
| Phobius | 190 | 246 | 57 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Cellular component | Membrane | A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. |
Expression pattern of LotjaGi5g1v0207000.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
Loading expression data from ljgea-geneid. Please wait…